TCONS_00064926 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064926
Unique Name	TCONS_00064926
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2288

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_427:236494..242496+

transcript sequence

>TCONS_00064926 ID=TCONS_00064926|Name=TCONS_00064926|organism=Clytia hemisphaerica|type=transcript|length=2288bp
ttctaatttaGTGAAAGAGTAAAAAGGTGTGTTGGTCTTTcacaaattca
agatggcggaaaTTCAACTAACTGGCATTAAGGATGTGGATTATGAAGAT
CACGCTGATGAGAAGTCAGCTTTAACCATGGATCAAAATGGAACACAGAA
GAATGGAGATGTTGAGGTGGAAGTCGAAGAAGGCCGTGGTGAGTGGGGAC
ACAAGATCGAGTTCATCTTGGCTTCCATTGGTCTGGCTGTTGGTCTTGGC
AATGTTTGGAGATTTCCCTATCTTTGCCAAAAGAATGGAGGAgGTGCCTT
TTTGATTCCTTACTTCATCATGATGGTGATCGAGGGTCTTCCCCTCTTTT
ACATCGAGTTCGCTCTTGGCCAACGCTTCCAACGCAGTGCTATCGGTTGT
TTTCAAAAGATTCACCCTGCTTTGATGGGTATCGGTGTCTCGTGTGTCGT
CATCTCTGTGTTGCTCTGCATTTATTATGTTGCTGTCATCTCGTGGTGTT
TCTACTATCTCTTCATCTCCTTCACAAGCAACTTACCCTTCCAAAAGTCA
AACTGTCCAAAGTATGATGCTTACGTCaacatgacgtcattttgcaatTC
TCACAACTCGAGCACCCTTGACAATTACAACAATACTTGTTCAGAGTCAG
CTAAATATCAAGGAGACTGTTGTCTGAAAGATCCTCAGTTGTACTATTTT
TACCGTAAAGCACTGGATGTGTCACCTGACATTGAAATCGCCGGAGGAGT
CAACGGGAAATTATTCGGCTGTTTGATTTTGTCATGGGTTGTTGTTTATG
CATGTATCGTCAAAGGCGTCAAATCCAGTGGAAAGGCTGTCTACTTCACT
GCGACCTTCCCTTACGTCGTGTTGATCATTCTTTTCTTCGTTGGTGTCAC
TCTCCCAGGAGCTGAGATTGGATTGAAAGCTCTCTTCACCCCTAAATGGG
AGAAGCTGATGGAGCCAGAAATTTGGATGGATGCTGCAACACAAATGTTT
TTCACCCTGTCTCTTGGATTCGGTGCTCTTGTTTCTTTCGCTTCTTACAT
GCCAAGGAAGAATAACTGTGTTCGTGATGCCTACACTGTTGTCTTGATCA
ATTGTGGAACTTCAATCTTTGCCGCAATCGTTGTCTTTTCCATTCTTGGA
CATCGTCAGCTGATCACTGGCAATCCAGTCGAAAAGGTTGGTGGTGGTCC
AGGGCTTGCCTTCATCACATTTTGCGATGCTTTCCTCCAAATGCCGGTTT
CACCGTTATGGTCTTCTCTCTTCTTTATCATGTTGATTCTGTTGGGAATA
GATTCGGAATTCGGAACATTGGAAGGGGCCATCGCTCCTTTCTATGACAT
GAACTGGATCAAAATGAAGAAGGAATTCTTCACTGCTTTGACAGCCATCT
TGATGATGTTGATTGGGATTGGACTGGTAACGAAATCCGGATTCtacgtt
ttccaaattttcGACGATCATTCCGTTTCCCTTGGCCTTCTCTTCATTGC
TTTCTTTCAAGTGGTCGCTGTCTCGTGGGTTTATGGAAATGATAAatttg
gcAATGATATAGAATACATGACAGGAAAACGACCATACCTCTTTTGGATG
ATCTGTTGGAAATACATCTCGCCGATCGCCATCTTGATTATCTTTATTGC
AAACATCGTGAAAAGTTCGTCAGGCGTCGCAAAATATAAAGTATATGTTG
GTTGTGCTGAACAATACACGAACTTTACATCGCTTGCTCCAGGGAACAAC
GAGCAAATTGCGGAAGTAGCGTACCCAGGGTGGGCGCAATTTATCATTGT
CATCTTCATCACTATCACCATGGTTCCGATCATTATCTACATGGTCATCG
ATCTCGTTCGCAACCCCTCAAAATGGAAGGAGGGTTTCAAAAATAAACTG
ACCAATGTGGTCGATTTGCACCCTGATCCAGTAAGAATGGACCCAAGCAG
AAGAAGAACTCCTCAAGAAATGGAGATGGTCATCATGAAAGAAGACGCTG
CCAATCcttaaacaatgaaatgaaattataGACATTTCCTCCTGCATAGG
TTAAGTGCATTCAAAAGTCCCAAGTGATGGCAACGTCAAACGGAGGGGAA
GCATGGCACCGCTCTCTCCGATGAGAGGAAAAGAGCTGAGATAAAAGAGA
AGTGAATTTCTAATGTAAGATAATAATGACTCATTATTTTAAAATGGAAG
AAGAGTATTTGTTTAAcgattttatcattattttattaCCTGTTATTATT
GTACACTATTTGGTATGTGTTTTTATAAGAGAATAAAC

Run BLAST on NCBI

transcript from alignment at scaffold_427:236494..242496+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064926 ID=TCONS_00064926|Name=TCONS_00064926|organism=Clytia hemisphaerica|type=transcript|length=6003bp|location=Sequence derived from alignment at scaffold_427:236494..242496+ (Clytia hemisphaerica)
ttctaatttaGTGAAAGAGTAAAAAGGTGTGTTGGTCTTTcacaaattca
agatggcggaaaTTCAACTAACTGGCATTAAGGATGTGGATTATGAAGGT
AATATGTTTATCCCTCGACAAacccttttttcttttaaacaaactCTCAG
CAACCAACTGCAAGGTGAAAACATTTCACAAGTCAACATTAATTTCTACT
GAAGTCCTTTCGAGTcaacatgatttttttaggactTTGGCGCTGACGTT
ACCGACTTAAAAAACGAAAGTTATTCAAGAACCTGCTATTTTCCATATTA
AAATAGAGTATCTTTGCAAAAGACGAGGTTTTCCAATGTATTCTTATTTC
AATACTGTATCCAAGGCCGTTCGGTCAATCGACGGTCAATCAACGGTCAA
TCAACGGTCAAATCTACAGTATAAATCATCCTTTGACGCAGTTTTCACTA
AACTTCTTGGTAGAccaaaaaacaatgaaactttccaggAATGTCATTCT
GTAAAAATCGCATGATTAATaatgaaaatgacaaaattatACTTCAATCC
GAAATTTGCGATGTCttgatgcattttgcaaaatgaaaaattttggaaaa
tctcaGCTCATATCATTTTTACCTTAATTCCAGACAAAGGACAGTTTTTA
GATCGAGAGCCCTCCTCCCCGGTAACCTAAAATCAGatcgtgattgtttt
ctgcacaccacactgaagggatgtgtgaaaataAGAACGATCTGACGAAT
AAGATATCTCGAATTTgtgtagactagagtctacaatcatggttgtaata
tttgagaaaaaagggaaatccaccgggaagttttgaaaccataatcaatt
tgtaagtgctctaaagttttaactctgagttttaacaagAGACTTatgat
ttacacgtttttttttattagaacccagtttataagaacattgaggctga
aatgtgtcaaaaaattaagaccagcctcagtttggaaaaaaatgacaaga
aagtacaattttttctcttttcaagcagttttaaccgaacttagggatgg
attttctaaaatcgagagtcaaatattgtccaaattttaccaattttaag
tgctttttattttgcatgatattgtcgattcagagtagtctgaaaaatta
agaactcatttaagaaaatttctaaaaaaataagcacatccaggctcacc
caaattttaggtgttctaataaaaaaaaaaacgtgtaggactttaggatc
tgaggatccaagaGTTAAAACAttgtccaataaggctcataatatagcct
ggaggtctataaacccgagccaaattgaaatatccgattgaatttgagag
atggcccaaaattgactttctcgcccgaactctatatttcgaaaaacgag
aaataagcttaattctcaatagatttcgaccatgattgtacttcCACCTG
AACTTTGCTTgctgatgattttgatggcgctgaGAGCGTTATACAAACAA
AAAGCTTAGAACGGAACAAGTTTCCTTCTTAGACTTCCATACGCGCTTGT
AACGTCTCTTATAAGCAAACAAGCCAGCGAATTTACACAATAACATCTTA
AATGCTTTTTTGACGTCTCAACCAAAAAGAATCGATTTCgcaaaaatact
gtttttcATGGTTTAATGAGTagccattaaaaaaaataatttgcacaCGG
AAGACCTTCAGACATTCGACCTTCTTCATTACAACATAAAAGGAAACCAT
TTCGAAATTCAAGGTGCTTATAAGTTCGTTTCGATCGATTGACATACGTT
TTGATATGTAAATTAGATAGAGTACAGTATTGACTCAATTGATTGCtttt
gaacaaaagaaaatttgctAGTCATCTTTACTTCTCGTTGACTTGTCAAT
GTTTTGATCAAGAAATTTCACATCATAGCAAAACATTCTTCGTGAAAGAC
CTCTTTTGAACTCTCCATAAACGATCATCATCATTTGTATTTAGATCACG
CTGATGAGAAGTCAGCTTTAACCATGGATCAAAATGGAACACAGAAGAAT
GGAGATGTTGAGGTGGAAGTCGAAGAAGGCCGTGGTGAGTGGGGACACAA
GATCGAGTTCATCTTGGCTTCCATTGGTCTGGCTGTTGGTCTTGGCAATG
TTTGGAGATTTCCCTATCTTTGCCAAAAGAATGGAGGAggtatttttaac
ttttttttgctcaagaatcttttttttcacattttacaCTGGATTTGCGG
GCCCGTAGAATAACAACTTGGTCTCGCCTAACAGCAAATAAAACAAGGAA
CTTTAATGATGAAACCCTTCTTATCCTCAATTCACAAACTCTTTTAGTGC
GgttttttgagaatttgaaAATGCGTTCTTTTTAGGTGCCTTTTTGATTC
CTTACTTCATCATGATGGTGATCGAGGGTCTTCCCCTCTTTTACATCGAG
TTCGCTCTTGGCCAACGCTTCCAACGCAGTGCTATCGGTTGTTTTCAAAA
GATTCACCCTGCTTTGATGGGTATCGGTGTCTCGTGTGTCGTCATCTCTG
TGTTGCTCTGCATTTATTATGTTGCTGTCATCTCGTGGTGTTTCTACTAT
CTCTTCATCTCCTTCACAAGCAACTTACCCTTCCAAAAGTCAAACTGTCC
AAAGTAAGTGTTTTACTTTTCACTGGCAAAATTTATACGACGGAGTGAAG
CccatttcttaaaaatgatttgtttcattttcgattGACTTTATTTTCAG
GTATGATGCTTACGTCaacatgacgtcattttgcaatTCTCACAACTCGA
GCACCCTTGACAATTACAACAATACTTGTTCAGAGTCAGCTAAATATCAA
GGAGACTGTTGTCTGAAAGATCCTCAGTTGTACTATTTTTACCGTAAAGC
ACTGGATGTGTCACCTGACATTGAAATCGCCGGAGGAGTCAACGGGAAAT
TATTCGGCTGTTTGATTTTGTCATGGGTTGTTGTTTATGCATGTATCGTC
AAAGGCGTCAAATCCAGTGGAAAGGTTCGTCCATCAGCTTACGTTACCTC
TCATTGAAATATATCATGTCTGACTTAGTTTGTTATAAATCGCTATAAAT
TCGATAATCTTGAATTTTTCTCACACTTTAACGTTGACGTCATAAGTTTA
TTCTATATACTTTTAGGCTGTTTACTTCACTGCGACCTTCCCTTACGTCG
TGTTGATCATTNATACTTTTAGGCTGTCTACTTCACTGCGACCTTCCCTT
ACGTCGTGTTGATCATTCTTTTCTTCGTTGGTGTCACTCTCCCAGGAGCT
GAGATTGGATTGAAAGCTCTCTTCACCCCTAAAGTAAGTAATTATCCCAT
CTTTTTCTTGCACGATCGAAGAAACTTAATCTTTCACTTTGTACGAATGA
AATGAAGACCAAGAtttgatataaaataaatatCTGTCTTGATGGTCagg
aatttcaaatttttcaaattcttttgtttgaagttgTAGCTTCGTAATTG
AGATTAGAGTTTGGATCCatccatagaggtataaagaaagacaggagatg
aatttgtcggtaattggtcgttaaagtcttttgatttcttttatgtaata
aatcaaaagaaattctaggctcgcNTAGTTTGTTATAAATCGCTATAAAT
TCGATAATCTTGAATTTTTCTCACACTTTAACGTTGACGTCATAAGTTTA
TTCTATATACTTTTAGGCTGTTTACTTCACTGCGACCTTCCCTTACGTCG
TGTTGATCATTCTTTTCTTCGTTGGTGTCACTCTCCCAGGAGCTGAGATT
GGATTGAAAGCTCTCTTCACCCCTAAAGTAAGTAATTATCCCATCTTTTT
CTTGCACGATCGAAGAAACTTAATCTTTCACTTTGTACGAATGAAATGAA
GACCAAGATATGATATAAAATAAATATCTGTCTTGATGGTCaggaatttc
aaatttttcaaattctgttgTTTGAAGTTGTAGCTTCGTAATTAAGATTA
GAGTTTGGATCCATCGGGGTGTTTAAGATGTTGGTAAAATTGCAATAAGA
CTGATGATTTATTACTTTCAGTGGGAGAAGCTGATGGAGCCAGAAATTTG
GATGGATGCTGCAACACAAATGTTTTTCACCCTGTCTCTTGGATTCGGTG
CTCTTGTTTCTTTCGCTTCTTACATGCCAAGGAAGAATAACTGTGTTCGT
GATGCCTACACTGTTGTCTTGATCAATTGTGGAACTTCAATCTTTGCCGC
AATCGTTGTCTTTTCCATTCTTGGACATCGTCAGCTGATCACTGGCAATC
CAGTCGAAAAGGTActtattgaatttgaaataaattaacTTGTTCAAAGA
ACTATTTTCGACAAGTGCGAGAACTATTCAAGTGAACTTTTTTTCGTCCT
ATGTAAAAACTTTTATAATAAATAACTAAACAAGCTTTATTTATAAGGTC
CCTTTATCTATCCAATTTATTCTAGGTTGGTGGTGGTCCAGGGCTTGCCT
TCATCACATTTTGCGATGCTTTCCTCCAAATGCCGGTTTCACCGTTATGG
TCTTCTCTCTTCTTTATCATGTTGATTCTGTTGGGAATAGATTCGGAATT
CGGAACATTGGAAGGGGCCATCGCTCCTTTCTATGACATGAACTGGATCA
AAATGAAGAAGGAATTCTTCACTGGTGAGCATCAGCTAATTCACTTTGCT
TTAGTTTTGTCAGTAACCAATATATTTGTCTAGTTTCGCCCGACTAATGA
TAACAACATTGAAATCTCTAATAAATTTTTCAGCTTTGACAGCCATCTTG
ATGATGTTGATTGGGATTGGACTGGTAACGAAATCCGGATTCtacgtttt
ccaaattttcGACGATCATTCCGTTTCCCTTGGCCTTCTCTTCATTGCTT
TCTTTCAAGTGGTCGCTGTCTCGTGGGTTTATGGAAATGATAAGTAAGTT
CTGATTTCTCCAGCATGGAATTTCTTCATCATCAACTGTCAATTCCGATA
CTGATTTTAGCAAACCTAATGGTTACTctctttttctttagatttggcAA
TGATATAGAATACATGACAGGAAAACGACCATACCTCTTTTGGATGATCT
GTTGGAAATACATCTCGCCGATCGCCATCTTGATTATCTTTATTGCAAAC
ATCGTGAAAAGTTCGTCAGGCGTCGCAAAATATAAAGTATATGTTGGTTG
TGCTGAACAATACGTAAGTTCATTTAATTTAGATCACACAACCCTTACGC
CACCATTCAGCGTGTACAATTCACGTGTACAATTAGCTTTCTGCATTAGA
AATATCATTAAATTTACATTGAGGTCTAACTGGATACTTTTTGATACATA
ATAATAGAATATGAATTCCATCGCATTCCTCCAAGTCACATTCTTCCCTT
TATTTTATATGCTAGACCCTTTTTCATTTCAGACGAACTTTACATCGCTT
GCTCCAGGGAACAACGAGCAAATTGCGGAAGTAGCGTACCCAGGGTGGGC
GCAATTTATCATTGTCATCTTCATCACTATCACCATGGTTCCGATCATTA
TCTACATGGTCATCGATCTCGTTCGCAACCCCTCAAAATGGAAGGAGGGT
TTCAAAAATAAACTGACCAATGTGGTCGATTTGCACCCTGATCCAGTAAG
AATGGACCCAAGCAGAAGAAGAACTCCTCAAGAAATGGAGATGGTCATCA
TGAAAGAAGACGCTGCCAATCcttaaacaatgaaatgaaattataGACAT
TTCCTCCTGCATAGGTTAAGTGCATTCAAAAGTCCCAAGTGATGGCAACG
TCAAACGGAGGGGAAGCATGGCACCGCTCTCTCCGATGAGAGGAAAAGAG
CTGAGATAAAAGAGAAGTGAATTTCTAATGTAAGATAATAATGACTCATT
ATTTTAAAATGGAAGAAGAGTATTTGTTTAAcgattttatcattatttta
ttaCCTGTTATTATTGTACACTATTTGGTATGTGTTTTTATAAGAGAATA
AAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040721	XLOC_040721	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_427	supercontig	scaffold_427:236494..242496 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
89.1356	78.3478	476.707	509.419	235.31	174.077	99.7802	99.0379	98.2511	130.652	53.6675	43.508	134.686	148.619	46.7726	41.8059	133.416	210.544	167.502	181.718	195.857	205.632	130.609	138.907	87.1991	81.2631	139.15	109.008	89.0863	110.327

Blast

[Close]

BLAST of TCONS_00064926 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 382.874 bits (982), Expect = 4.082e-122
Identity = 203/478 (42.47%), Postives = 301/478 (62.97%), Query Frame = 2

Query:  194 WGHKIEFILASIGLAVGLGNVWRFPYLCQKNGGGAFLIPYFIMMVIEGLPLFYIEFALGQRFQRSAIGCFQKIHPALMGIGVSCVVISVLLCIYYVAVISWCFYYLFISFTSNLPFQKSNCPKYDAYVNMTSFCNSHNSSTLDNYNNTCSESAKYQGDCCLKDPQLYYFYRKALDVSPDIEIAGGVNGKLFGCLILSWVVVYACIVKGVKSSGKAVYFTATFPYVVLIILFFVGVTLPGAEIGLKALFTPKWEKLMEPEIWMDAATQMFFTLSLGFGALVSFASYMPRKNNCVRDAYTVVLINCGTSIFAAIVVFSILGHRQLITGNPVEKVGG-GPGLAFITFCDAFLQMPVSPLWSSLFFIMLILLGIDSEFGTLEGAIAPFYDM--NWIKMKKEFFTALTAILMMLIGIGLVTKSGFYVFQIFDDHSVS-LGLLFIAFFQVVAVSWVYGNDKFGNDIEYMTGKRPYLFWMICWKY 1615
            W  + +F+++ +G A+GLGNVWRFPYLC KNGGGAFLIPYF+ ++  G+PLF +E +LGQ      +G + K+ P   G+G++  V+S  L IYY+ +ISW  YYL+ SFT+ LP+++ + P        T  C S+ S      N T   SA  +           ++ R    ++  ++  G +   L   L ++W++VY CI KGV  +GK VYF+AT+PY++LIILFF GVTLPGA+ G+    TP + KL + E+W+DAATQ+FF+  LG G+L++  SY    NN  RD+  V  IN  TS+FA  V+FSI+G    +T   +  V   GPGLAF+ + +A  Q+P+SPLW+ LFF ML++LGIDS+F T+EG I    D     ++ ++E F A   I+  LIG+  +T+ G YVF++FD +S S + LLF+ FF+ V++SW YG ++F ++I+ M G RP ++W +CW +
Sbjct:   47 WKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVW-KLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPW------NTDRCFSNYSMV----NTTNMTSAVVE-----------FWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSF 502

The following BLAST results are available for this feature:

BLAST of TCONS_00064926 vs. Swiss-Prot (Human)

BLAST of TCONS_00064926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC6A1	4.082e-122	42.47	Sodium- and chloride-dependent GABA transporter 1 ...	[more]

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TCONS_00064926 (transcript) - C. hemisphaerica