TCONS_00064924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064924
Unique NameTCONS_00064924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064924 ID=TCONS_00064924|Name=TCONS_00064924|organism=Clytia hemisphaerica|type=transcript|length=2608bp
AAGCAGTTCATGTGAAGCAAGAAGAGAGTAGTGATTGGTGATGTGTTTGC
GCAGTTGAGTCCAAACCAAACATGAAGCGAAAGTCAGAAATGTAATCTGA
ACTAAAGAAGAGAACGTAAATATTGGATCGCTAAATGAAAGAAGATTTTC
TCCTCTGCAAACTTTCAACATTCAATCATTCAATGAAATTTGTAAATGAA
CACCGCAAACCTCTCACTGTGATTTGTACGTTTCACCTTCACCATTTTCT
AACcaattcaatttctaatttaGTGAAAGAGTAAAAAGGTGTGTTGGTCT
TTcacaaattcaagatggcggaaaTTCAACTAACTGGCATTAAGGATGTG
GATTATGAAGATCACGCTGATGAGAAGTCAGCTTTAACCATGGATCAAAA
TGGAACACAGAAGAATGGAGATGTTGAGGTGGAAGTCGAAGAAGGCCGTG
GTGAGTGGGGACACAAGATCGAGTTCATCTTGGCTTCCATTGGTCTGGCT
GTTGGTCTTGGCAATGTTTGGAGATTTCCCTATCTTTGCCAAAAGAATGG
AGGAgGTGCCTTTTTGATTCCTTACTTCATCATGATGGTGATCGAGGGTC
TTCCCCTCTTTTACATCGAGTTCGCTCTTGGCCAACGCTTCCAACGCAGT
GCTATCGGTTGTTTTCAAAAGATTCACCCTGCTTTGATGGGTATCGGTGT
CTCGTGTGTCGTCATCTCTGTGTTGCTCTGCATTTATTATGTTGCTGTCA
TCTCGTGGTGTTTCTACTATCTCTTCATCTCCTTCACAAGCAACTTACCC
TTCCAAAAGTCAAACTGTCCAAAGTATGATGCTTACGTCaacatgacgtc
attttgcaatTCTCACAACTCGAGCACCCTTGACAATTACAACAATACTT
GTTCAGAGTCAGCTAAATATCAAGGAGACTGTTGTCTGAAAGATCCTCAG
TTGTACTATTTTTACCGTAAAGCACTGGATGTGTCACCTGACATTGAAAT
CGCCGGAGGAGTCAACGGGAAATTATTCGGCTGTTTGATTTTGTCATGGG
TTGTTGTTTATGCATGTATCGTCAAAGGCGTCAAATCCAGTGGAAAGGCT
GTTTACTTCACTGCGACCTTCCCTTACGTCGTGTTGATCATTCTTTTCTT
CGTTGGTGTCACTCTCCCAGGAGCTGAGATTGGATTGAAAGCTCTCTTCA
CCCCTAAATGGGAGAAGCTGATGGAGCCAGAAATTTGGATGGATGCTGCA
ACACAAATGTTTTTCACCCTGTCTCTTGGATTCGGTGCTCTTGTTTCTTT
CGCTTCTTACATGCCAAGGAAGAATAACTGTGTTCGTGATGCCTACACTG
TTGTCTTGATCAATTGTGGAACTTCAATCTTTGCCGCAATCGTTGTCTTT
TCCATTCTTGGACATCGTCAGCTGATCACTGGCAATCCAGTCGAAAAGGT
TGGTGGTGGTCCAGGGCTTGCCTTCATCACATTTTGCGATGCTTTCCTCC
AAATGCCGGTTTCACCGTTATGGTCTTCTCTCTTCTTTATCATGTTGATT
CTGTTGGGAATAGATTCGGAATTCGGAACATTGGAAGGGGCCATCGCTCC
TTTCTATGACATGAACTGGATCAAAATGAAGAAGGAATTCTTCACTGCTT
TGACAGCCATCTTGATGATGTTGATTGGGATTGGACTGGTAACGAAATCC
GGATTCtacgttttccaaattttcGACGATCATTCCGTTTCCCTTGGCCT
TCTCTTCATTGCTTTCTTTCAAGTGGTCGCTGTCTCGTGGGTTTATGGAA
ATGATAAatttggcAATGATATAGAATACATGACAGGAAAACGACCATAC
CTCTTTTGGATGATCTGTTGGAAATACATCTCGCCGATCGCCATCTTGAT
TATCTTTATTGCAAACATCGTGAAAAGTTCGTCAGGCGTCGCAAAATATA
AAGTATATGTTGGTTGTGCTGAACAATACACGAACTTTACATCGCTTGCT
CCAGGGAACAACGAGCAAATTGCGGAAGTAGCGTACCCAGGGTGGGCGCA
ATTTATCATTGTCATCTTCATCACTATCACCATGGTTCCGATCATTATCT
ACATGGTCATCGATCTCGTTCGCAACCCCTCAAAATGGAAGGAGGGTTTC
AAAAATAAACTGACCAATGTGGTCGATTTGCACCCTGATCCAGTAAGAAT
GGACCCAAGCAGAAGAAGAACTCCTCAAGAAATGGAGATGGTCATCATGA
AAGAAGACGCTGCCAATCcttaaacaatgaaatgaaattataGACATTTC
CTCCTGCATAGGTTAAGTGCATTCAAAAGTCCCAAGTGATGGCAACGTCA
AACGGAGGGGAAGCATGGCGCCGCTCTCTCCGATGAGAGGAAAAGAGCTG
AGATAAAAGAGAAGTGAATTTCTAATGTAAGATAATAATGACTCATTATT
TTAAAATGGAAGAAGAGTATTTGTTTAAcgattttatcattattttatta
CCTGTTATTATTGTACACTATTTGGTATGTGTTTTTATAAGAGAATAAAC
CATTGTATCTATTCAACGAAAGACCCGCTTTCTGGCAATTTTACAATCTA
TGGTGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_427:236232..243357+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064924 ID=TCONS_00064924|Name=TCONS_00064924|organism=Clytia hemisphaerica|type=transcript|length=7126bp|location=Sequence derived from alignment at scaffold_427:236232..243357+ (Clytia hemisphaerica)
AAGCAGTTCATGTGAAGCAAGAAGAGAGTAGTGATTGGTGATGTGTTTGC GCAGTTGAGTCCAAACCAAACATGAAGCGAAAGTCAGAAATGTAATCTGA ACTAAAGAAGAGAACGTAAATATTGGATCGCTAAATGAAAGAAGATTTTC TCCTCTGCAAACTTTCAACATTCAATCATTCAATGAAATTTGTAAATGAA CACCGCAAACCTCTCACTGTGATTTGTACGTTTCACCTTCACCATTTTCT AACcaattcaatttctaatttaGTGAAAGAGTAAAAAGGTGTGTTGGTCT TTcacaaattcaagatggcggaaaTTCAACTAACTGGCATTAAGGATGTG GATTATGAAGGTAATATGTTTATCCCTCGACAAacccttttttcttttaa acaaactCTCAGCAACCAACTGCAAGGTGAAAACATTTCACAAGTCAACA TTAATTTCTACTGAAGTCCTTTCGAGTcaacatgatttttttaggactTT GGCGCTGACGTTACCGACTTAAAAAACGAAAGTTATTCAAGAACCTGCTA TTTTCCATATTAAAATAGAGTATCTTTGCAAAAGACGAGGTTTTCCAATG TATTCTTATTTCAATACTGTATCCAAGGCCGTTCGGTCAATCGACGGTCA ATCAACGGTCAATCAACGGTCAAATCTACAGTATAAATCATCCTTTGACG CAGTTTTCACTAAACTTCTTGGTAGAccaaaaaacaatgaaactttccag gAATGTCATTCTGTAAAAATCGCATGATTAATaatgaaaatgacaaaatt atACTTCAATCCGAAATTTGCGATGTCttgatgcattttgcaaaatgaaa aattttggaaaatctcaGCTCATATCATTTTTACCTTAATTCCAGACAAA GGACAGTTTTTAGATCGAGAGCCCTCCTCCCCGGTAACCTAAAATCAGat cgtgattgttttctgcacaccacactgaagggatgtgtgaaaataAGAAC GATCTGACGAATAAGATATCTCGAATTTgtgtagactagagtctacaatc atggttgtaatatttgagaaaaaagggaaatccaccgggaagttttgaaa ccataatcaatttgtaagtgctctaaagttttaactctgagttttaacaa gAGACTTatgatttacacgtttttttttattagaacccagtttataagaa cattgaggctgaaatgtgtcaaaaaattaagaccagcctcagtttggaaa aaaatgacaagaaagtacaattttttctcttttcaagcagttttaaccga acttagggatggattttctaaaatcgagagtcaaatattgtccaaatttt accaattttaagtgctttttattttgcatgatattgtcgattcagagtag tctgaaaaattaagaactcatttaagaaaatttctaaaaaaataagcaca tccaggctcacccaaattttaggtgttctaataaaaaaaaaaacgtgtag gactttaggatctgaggatccaagaGTTAAAACAttgtccaataaggctc ataatatagcctggaggtctataaacccgagccaaattgaaatatccgat tgaatttgagagatggcccaaaattgactttctcgcccgaactctatatt tcgaaaaacgagaaataagcttaattctcaatagatttcgaccatgattg tacttcCACCTGAACTTTGCTTgctgatgattttgatggcgctgaGAGCG TTATACAAACAAAAAGCTTAGAACGGAACAAGTTTCCTTCTTAGACTTCC ATACGCGCTTGTAACGTCTCTTATAAGCAAACAAGCCAGCGAATTTACAC AATAACATCTTAAATGCTTTTTTGACGTCTCAACCAAAAAGAATCGATTT CgcaaaaatactgtttttcATGGTTTAATGAGTagccattaaaaaaaata atttgcacaCGGAAGACCTTCAGACATTCGACCTTCTTCATTACAACATA AAAGGAAACCATTTCGAAATTCAAGGTGCTTATAAGTTCGTTTCGATCGA TTGACATACGTTTTGATATGTAAATTAGATAGAGTACAGTATTGACTCAA TTGATTGCttttgaacaaaagaaaatttgctAGTCATCTTTACTTCTCGT TGACTTGTCAATGTTTTGATCAAGAAATTTCACATCATAGCAAAACATTC TTCGTGAAAGACCTCTTTTGAACTCTCCATAAACGATCATCATCATTTGT ATTTAGATCACGCTGATGAGAAGTCAGCTTTAACCATGGATCAAAATGGA ACACAGAAGAATGGAGATGTTGAGGTGGAAGTCGAAGAAGGCCGTGGTGA GTGGGGACACAAGATCGAGTTCATCTTGGCTTCCATTGGTCTGGCTGTTG GTCTTGGCAATGTTTGGAGATTTCCCTATCTTTGCCAAAAGAATGGAGGA ggtatttttaacttttttttgctcaagaatcttttttttcacattttaca CTGGATTTGCGGGCCCGTAGAATAACAACTTGGTCTCGCCTAACAGCAAA TAAAACAAGGAACTTTAATGATGAAACCCTTCTTATCCTCAATTCACAAA CTCTTTTAGTGCGgttttttgagaatttgaaAATGCGTTCTTTTTAGGTG CCTTTTTGATTCCTTACTTCATCATGATGGTGATCGAGGGTCTTCCCCTC TTTTACATCGAGTTCGCTCTTGGCCAACGCTTCCAACGCAGTGCTATCGG TTGTTTTCAAAAGATTCACCCTGCTTTGATGGGTATCGGTGTCTCGTGTG TCGTCATCTCTGTGTTGCTCTGCATTTATTATGTTGCTGTCATCTCGTGG TGTTTCTACTATCTCTTCATCTCCTTCACAAGCAACTTACCCTTCCAAAA GTCAAACTGTCCAAAGTAAGTGTTTTACTTTTCACTGGCAAAATTTATAC GACGGAGTGAAGCccatttcttaaaaatgatttgtttcattttcgattGA CTTTATTTTCAGGTATGATGCTTACGTCaacatgacgtcattttgcaatT CTCACAACTCGAGCACCCTTGACAATTACAACAATACTTGTTCAGAGTCA GCTAAATATCAAGGAGACTGTTGTCTGAAAGATCCTCAGTTGTACTATTT TTACCGTAAAGCACTGGATGTGTCACCTGACATTGAAATCGCCGGAGGAG TCAACGGGAAATTATTCGGCTGTTTGATTTTGTCATGGGTTGTTGTTTAT GCATGTATCGTCAAAGGCGTCAAATCCAGTGGAAAGGTTCGTCCATCAGC TTACGTTACCTCTCATTGAAATATATCATGTCTGACTTAGTTTGTTATAA ATCGCTATAAATTCGATAATCTTGAATTTTTCTCACACTTTAACGTTGAC GTCATAAGTTTATTCTATATACTTTTAGGCTGTTTACTTCACTGCGACCT TCCCTTACGTCGTGTTGATCATTNATACTTTTAGGCTGTCTACTTCACTG CGACCTTCCCTTACGTCGTGTTGATCATTCTTTTCTTCGTTGGTGTCACT CTCCCAGGAGCTGAGATTGGATTGAAAGCTCTCTTCACCCCTAAAGTAAG TAATTATCCCATCTTTTTCTTGCACGATCGAAGAAACTTAATCTTTCACT TTGTACGAATGAAATGAAGACCAAGAtttgatataaaataaatatCTGTC TTGATGGTCaggaatttcaaatttttcaaattcttttgtttgaagttgTA GCTTCGTAATTGAGATTAGAGTTTGGATCCatccatagaggtataaagaa agacaggagatgaatttgtcggtaattggtcgttaaagtcttttgatttc ttttatgtaataaatcaaaagaaattctaggctcgcNTAGTTTGTTATAA ATCGCTATAAATTCGATAATCTTGAATTTTTCTCACACTTTAACGTTGAC GTCATAAGTTTATTCTATATACTTTTAGGCTGTTTACTTCACTGCGACCT TCCCTTACGTCGTGTTGATCATTCTTTTCTTCGTTGGTGTCACTCTCCCA GGAGCTGAGATTGGATTGAAAGCTCTCTTCACCCCTAAAGTAAGTAATTA TCCCATCTTTTTCTTGCACGATCGAAGAAACTTAATCTTTCACTTTGTAC GAATGAAATGAAGACCAAGATATGATATAAAATAAATATCTGTCTTGATG GTCaggaatttcaaatttttcaaattctgttgTTTGAAGTTGTAGCTTCG TAATTAAGATTAGAGTTTGGATCCATCGGGGTGTTTAAGATGTTGGTAAA ATTGCAATAAGACTGATGATTTATTACTTTCAGTGGGAGAAGCTGATGGA GCCAGAAATTTGGATGGATGCTGCAACACAAATGTTTTTCACCCTGTCTC TTGGATTCGGTGCTCTTGTTTCTTTCGCTTCTTACATGCCAAGGAAGAAT AACTGTGTTCGTGATGCCTACACTGTTGTCTTGATCAATTGTGGAACTTC AATCTTTGCCGCAATCGTTGTCTTTTCCATTCTTGGACATCGTCAGCTGA TCACTGGCAATCCAGTCGAAAAGGTActtattgaatttgaaataaattaa cTTGTTCAAAGAACTATTTTCGACAAGTGCGAGAACTATTCAAGTGAACT TTTTTTCGTCCTATGTAAAAACTTTTATAATAAATAACTAAACAAGCTTT ATTTATAAGGTCCCTTTATCTATCCAATTTATTCTAGGTTGGTGGTGGTC CAGGGCTTGCCTTCATCACATTTTGCGATGCTTTCCTCCAAATGCCGGTT TCACCGTTATGGTCTTCTCTCTTCTTTATCATGTTGATTCTGTTGGGAAT AGATTCGGAATTCGGAACATTGGAAGGGGCCATCGCTCCTTTCTATGACA TGAACTGGATCAAAATGAAGAAGGAATTCTTCACTGGTGAGCATCAGCTA ATTCACTTTGCTTTAGTTTTGTCAGTAACCAATATATTTGTCTAGTTTCG CCCGACTAATGATAACAACATTGAAATCTCTAATAAATTTTTCAGCTTTG ACAGCCATCTTGATGATGTTGATTGGGATTGGACTGGTAACGAAATCCGG ATTCtacgttttccaaattttcGACGATCATTCCGTTTCCCTTGGCCTTC TCTTCATTGCTTTCTTTCAAGTGGTCGCTGTCTCGTGGGTTTATGGAAAT GATAAGTAAGTTCTGATTTCTCCAGCATGGAATTTCTTCATCATCAACTG TCAATTCCGATACTGATTTTAGCAAACCTAATGGTTACTctctttttctt tagatttggcAATGATATAGAATACATGACAGGAAAACGACCATACCTCT TTTGGATGATCTGTTGGAAATACATCTCGCCGATCGCCATCTTGATTATC TTTATTGCAAACATCGTGAAAAGTTCGTCAGGCGTCGCAAAATATAAAGT ATATGTTGGTTGTGCTGAACAATACGTAAGTTCATTTAATTTAGATCACA CAACCCTTACGCCACCATTCAGCGTGTACAATTCACGTGTACAATTAGCT TTCTGCATTAGAAATATCATTAAATTTACATTGAGGTCTAACTGGATACT TTTTGATACATAATAATAGAATATGAATTCCATCGCATTCCTCCAAGTCA CATTCTTCCCTTTATTTTATATGCTAGACCCTTTTTCATTTCAGACGAAC TTTACATCGCTTGCTCCAGGGAACAACGAGCAAATTGCGGAAGTAGCGTA CCCAGGGTGGGCGCAATTTATCATTGTCATCTTCATCACTATCACCATGG TTCCGATCATTATCTACATGGTCATCGATCTCGTTCGCAACCCCTCAAAA TGGAAGGAGGGTTTCAAAAATAAACTGACCAATGTGGTCGATTTGCACCC TGATCCAGTAAGAATGGACCCAAGCAGAAGAAGAACTCCTCAAGAAATGG AGATGGTCATCATGAAAGAAGACGCTGCCAATCcttaaacaatgaaatga aattataGACATTTCCTCCTGCATAGGTTAAGTGCATTCAAAAGTCCCAA GTGATGGCAACGTCAAACGGAGGGGAAGCATGGCACCGCTCTCTCCGATG AGAGGAAAAGAGCTGAGATAAAAGAGAAGTGAATTTCTAATGTAAGATAA TAATGACTCATTATTTTAAAATGGAAGAAGAGTATTTGTTTAAcgatttt atcattattttattaCCTGTTATTATTGTACACTATTTGGTATGTGTTTT TATAAGAGAATAAACCATTGTATCTATTCAACGAAAGACCCGCTTTCTGG CAATTTTACAATCTNTACAATTCAGCGTGTACAATTCACGTGTACAATTA GCTTTCTGCATTAGAGATATCATTAAATTTACATTGAGGTCTAACTGGAT ACTTTTTGATACATAATAATAGAATATGAATTCCATCGCATTCCTTCAAG TCACATTCTTCCCTTTATTTTATATGCTAGACCCTTTTTCATTTCAGACG AACTTTACATCGCTTGCTCCAGGGAACAACGAGCAAATTGCGGAAGTAGC GTACCCAGGGTGGGCGCAATTTATCATTGTCATCTTCATCACTATCACCA TGGTTCCGATCATTATCTACATGGTCATCGATCTCGTTCGCAACCCCTCA AAATGGAAGGAGGGTTTCAAAAATAAACTGACCAATGTGGTCGATTTGCA CCCTGATCCAGTAAGAATGGACCCAAGCAGAAGAAGAACTCCTCAAGAAA TGGAGATGGTCATCATGAAAGAAGACGCTGCCAATCcttaaacaatgaaa tgaaattataGACATTTCCTCCTGCATAGGTTAAGTGCATTCAAAAGTCC CAAGTGATGGCAACGTCAAACGGAGGGGAAGCATGGCGCCGCTCTCTCCG ATGAGAGGAAAAGAGCTGAGATAAAAGAGAAGTGAATTTCTAATGTAAGA TAATAATGACTCATTATTTTAAAATGGAAGAAGAGTATTTGTTTAAcgat tttatcattattttattaCCTGTTATTATTGTACACTATTTGGTATGTGT TTTTATAAGAGAATAAACCATTGTATCTATTCAACGAAAGACCCGCTTTC TGGCAATTTTACAATCTATGGTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040721XLOC_040721Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064924-exon-scaffold_427-1491911889:236232..236591TCONS_00064924-exon-scaffold_427-1491911889:236232..236591Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1510915933:236232..236591TCONS_00064924-exon-scaffold_427-1510915933:236232..236591Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1575043694:236232..236591TCONS_00064924-exon-scaffold_427-1575043694:236232..236591Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1491911889:238488..238682TCONS_00064924-exon-scaffold_427-1491911889:238488..238682Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1510915933:238488..238682TCONS_00064924-exon-scaffold_427-1510915933:238488..238682Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1575043694:238488..238682TCONS_00064924-exon-scaffold_427-1575043694:238488..238682Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1491911889:238879..239146TCONS_00064924-exon-scaffold_427-1491911889:238879..239146Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1510915933:238879..239146TCONS_00064924-exon-scaffold_427-1510915933:238879..239146Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1575043694:238879..239146TCONS_00064924-exon-scaffold_427-1575043694:238879..239146Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1491911889:239244..239517TCONS_00064924-exon-scaffold_427-1491911889:239244..239517Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1510915933:239244..239517TCONS_00064924-exon-scaffold_427-1510915933:239244..239517Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1575043694:239244..239517TCONS_00064924-exon-scaffold_427-1575043694:239244..239517Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1491911889:240210..240320TCONS_00064924-exon-scaffold_427-1491911889:240210..240320Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1510915933:240210..240320TCONS_00064924-exon-scaffold_427-1510915933:240210..240320Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1575043694:240210..240320TCONS_00064924-exon-scaffold_427-1575043694:240210..240320Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1491911889:240565..240804TCONS_00064924-exon-scaffold_427-1491911889:240565..240804Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1510915933:240565..240804TCONS_00064924-exon-scaffold_427-1510915933:240565..240804Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1575043694:240565..240804TCONS_00064924-exon-scaffold_427-1575043694:240565..240804Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1491911889:240969..241167TCONS_00064924-exon-scaffold_427-1491911889:240969..241167Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1510915933:240969..241167TCONS_00064924-exon-scaffold_427-1510915933:240969..241167Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1575043694:240969..241167TCONS_00064924-exon-scaffold_427-1575043694:240969..241167Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1491911889:241277..241436TCONS_00064924-exon-scaffold_427-1491911889:241277..241436Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1510915933:241277..241436TCONS_00064924-exon-scaffold_427-1510915933:241277..241436Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1575043694:241277..241436TCONS_00064924-exon-scaffold_427-1575043694:241277..241436Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1491911889:241535..241706TCONS_00064924-exon-scaffold_427-1491911889:241535..241706Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1510915933:241535..241706TCONS_00064924-exon-scaffold_427-1510915933:241535..241706Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1575043694:241535..241706TCONS_00064924-exon-scaffold_427-1575043694:241535..241706Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1491911889:242729..243357TCONS_00064924-exon-scaffold_427-1491911889:242729..243357Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1510915933:242729..243357TCONS_00064924-exon-scaffold_427-1510915933:242729..243357Clytia hemisphaericaexon
TCONS_00064924-exon-scaffold_427-1575043694:242729..243357TCONS_00064924-exon-scaffold_427-1575043694:242729..243357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_427supercontigscaffold_427:236232..243357 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0837625 0.120301 0.373351 0 0 0 0 0 0.037037 0 0 0 0 0 0 0 0 0.0532497 0 0.134088 0.102946 0.0942899 0.0634287 0 0 0.084583 0 0 0
Blast
BLAST of TCONS_00064924 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 382.874 bits (982), Expect = 5.786e-121
Identity = 203/478 (42.47%), Postives = 301/478 (62.97%), Query Frame = 3
Query:  456 WGHKIEFILASIGLAVGLGNVWRFPYLCQKNGGGAFLIPYFIMMVIEGLPLFYIEFALGQRFQRSAIGCFQKIHPALMGIGVSCVVISVLLCIYYVAVISWCFYYLFISFTSNLPFQKSNCPKYDAYVNMTSFCNSHNSSTLDNYNNTCSESAKYQGDCCLKDPQLYYFYRKALDVSPDIEIAGGVNGKLFGCLILSWVVVYACIVKGVKSSGKAVYFTATFPYVVLIILFFVGVTLPGAEIGLKALFTPKWEKLMEPEIWMDAATQMFFTLSLGFGALVSFASYMPRKNNCVRDAYTVVLINCGTSIFAAIVVFSILGHRQLITGNPVEKVGG-GPGLAFITFCDAFLQMPVSPLWSSLFFIMLILLGIDSEFGTLEGAIAPFYDM--NWIKMKKEFFTALTAILMMLIGIGLVTKSGFYVFQIFDDHSVS-LGLLFIAFFQVVAVSWVYGNDKFGNDIEYMTGKRPYLFWMICWKY 1877
            W  + +F+++ +G A+GLGNVWRFPYLC KNGGGAFLIPYF+ ++  G+PLF +E +LGQ      +G + K+ P   G+G++  V+S  L IYY+ +ISW  YYL+ SFT+ LP+++ + P        T  C S+ S      N T   SA  +           ++ R    ++  ++  G +   L   L ++W++VY CI KGV  +GK VYF+AT+PY++LIILFF GVTLPGA+ G+    TP + KL + E+W+DAATQ+FF+  LG G+L++  SY    NN  RD+  V  IN  TS+FA  V+FSI+G    +T   +  V   GPGLAF+ + +A  Q+P+SPLW+ LFF ML++LGIDS+F T+EG I    D     ++ ++E F A   I+  LIG+  +T+ G YVF++FD +S S + LLF+ FF+ V++SW YG ++F ++I+ M G RP ++W +CW +
Sbjct:   47 WKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVW-KLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPW------NTDRCFSNYSMV----NTTNMTSAVVE-----------FWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSF 502          
The following BLAST results are available for this feature:
BLAST of TCONS_00064924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC6A15.786e-12142.47Sodium- and chloride-dependent GABA transporter 1 ... [more]
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