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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064918 ID=TCONS_00064918|Name=TCONS_00064918|organism=Clytia hemisphaerica|type=transcript|length=2531bpRun BLAST on NCBI transcript from alignment at scaffold_427:218339..225932+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064918 ID=TCONS_00064918|Name=TCONS_00064918|organism=Clytia hemisphaerica|type=transcript|length=7594bp|location=Sequence derived from alignment at scaffold_427:218339..225932+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064918 vs. Swiss-Prot (Human)
Match: S6A19 (Sodium-dependent neutral amino acid transporter B(0)AT1 OS=Homo sapiens GN=SLC6A19 PE=1 SV=1) HSP 1 Score: 400.208 bits (1027), Expect = 1.811e-127 Identity = 234/603 (38.81%), Postives = 336/603 (55.72%), Query Frame = 2
Query: 413 GNDRYQSNVDDTQVRIEKLDEGRDAWGNKIEFILASIGLAVGLGNVWRFPYLCQKNGGGAFLIPYFIMMVIEGIPLFYIEFAIGQRFRRSAPGAWARIHPALKXXXXXXXXXXXXXXXYYVCVIAWSFLYLFVSMTDKLPWTIENCPRYSEYKPLADQCAANSSMCDAKNNFNECCMKDPQLYYFYRKALDVSVDITDSGSGFNGKLFGCLILSWVVVYACIVKGVKSSGKAVYFTATFPYLILIILFFVGVTLDGADIGLKKLFTPKWEKLKDPGIWMDAAAQMFFTLSLGFGALISFASYMPLRNNCVRDAYTVVLINCGTSLFAGIVVFSILGHR------EKVTGNPVDKVGG-----------------------GPG----LAFITFCD--AFLQMPV-------------------SPLWSCLFFIMLILLGIDSEFGTLEALIAPFYDMKWV--KFRKEFFTGGVAVVMLIIGIGFTQPSGYYAFQLFDDYSLGLPLLFIAFFQVIAVSWVYGNDKFANDIEFMTGSRPNIFWMICWKYISPLAIFVIFIANCVKQGSSTYTYTAYVGCLLDPFSSKHPGTEE--STAKVEYPGW 2047
G D ++ + + ++ R W NK +++L +G VGLGNVWRFPYLCQ +GGGAF+IP+ I++V+EGIPL Y+EFAIGQR RR + G W+ IHPALKG+G++ ++ S ++ +YY +I+W YLF S + LPW+ +CP D+CA +S P Y++YR+ L++S I+DSGS + CL +W V+Y C ++G++++GKAVY T+T PY++L I G+TL GA G+ LFTP +L P W+DA AQ+FF+ SL FG LISF+SY + NNC +D+ V +IN TS++ IVV+S++G R + + N + + G P L F T CD AFL V SPLWS LFFIML LG+ S FG +E ++ P D++ + K+ KE TG + + +IG FT SG Y L D Y+ +PLL IAF ++ +V +VYG D+F DIEFM G +PNIFW + W+ +SPL + +IF+ V + S TY+ + PG EE + K+ YP W
Sbjct: 10 GLDARIPSLAELETIEQEEASSRPKWDNKAQYMLTCLGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVLEGIPLLYLEFAIGQRLRRGSLGVWSSIHPALKGLGLASMLTSFMVGLYYNTIISWIMWYLFNSFQEPLPWS--DCPLNENQTGYVDECARSS----------------PVDYFWYRETLNISTSISDSGS-IQWWMLLCLACAWSVLYMCTIRGIETTGKAVYITSTLPYVVLTIFLIRGLTLKGATNGIVFLFTPNVTELAQPDTWLDAGAQVFFSFSLAFGGLISFSSYNSVHNNCEKDSVIVSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDLPEGNVTQENFVDMQQRCNASDPAAYAQLVFQT-CDINAFLSEAVEGTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVVVPLQDLRVIPPKWPKEVLTGLICLGTFLIGFIFTLNSGQYWLSLLDSYAGSIPLLIIAFCEMFSVVYVYGVDRFNKDIEFMIGHKPNIFWQVTWRVVSPLLMLIIFLFFFVVEVSQELTYSIW-----------DPGYEEFPKSQKISYPNW 581 The following BLAST results are available for this feature:
BLAST of TCONS_00064918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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