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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064915 ID=TCONS_00064915|Name=TCONS_00064915|organism=Clytia hemisphaerica|type=transcript|length=6846bpRun BLAST on NCBI protein sequence of TCONS_00064915-protein >TCONS_00064915-protein ID=TCONS_00064915-protein|Name=TCONS_00064915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1838bp MGCLINFVLVISHIVIIVDGEMKTLDFKATTLLIHKDNIYVGGINKLARFRun BLAST on NCBI transcript from alignment at scaffold_427:193720..212593+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064915 ID=TCONS_00064915|Name=TCONS_00064915|organism=Clytia hemisphaerica|type=transcript|length=18874bp|location=Sequence derived from alignment at scaffold_427:193720..212593+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_427:193720..212593+ >TCONS_00064915 ID=TCONS_00064915|Name=TCONS_00064915|organism=Clytia hemisphaerica|type=CDS|length=204129bp|location=Sequence derived from alignment at scaffold_427:193720..212593+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064915 vs. Swiss-Prot (Human)
Match: PLXA4 (Plexin-A4 OS=Homo sapiens GN=PLXNA4 PE=1 SV=4) HSP 1 Score: 778.089 bits (2008), Expect = 0.000e+0 Identity = 603/1925 (31.32%), Postives = 945/1925 (49.09%), Query Frame = 3
Query: 180 NIYVGGINKLARFDSGLNRLFETSNGPVLNNKYCHPVSLEKLECMMGEKSLEPEDNINKILLYTEKPTPMIIACGSIYQGICQFLNVDTLQNITEIYKNKAYTNQIVASTSYISSNGPDASATAF---INYSKSSTFIVNAKTMTIRPLRQEHLVISAVKLGNQLSEDQFLTSPDAEINYKAVYFFKKSGLAM--------------YKVYYKSSFQIGDNVYFTTTQKNLQSSDPPN--------VSKIIQIKFQDNKLNDYVEMPFLCQKGGVNFNVLVSSTLKQLNSSNVFSNT---SPGDYILIGIFKTEIGPKK-------YAVCSYVIKNLIEKANNVRKSC-KDQKLVPWSEFK-KQSACSDQLLSAVTEEFDGKLLYESIEEIGVVDG-----HEHDRGFS-LYLSFPSHSIKMFHLSTKNFFQYAKEKQTGDGL-FKKIEITD------------DH--LFAISDNSIAKVPLERCESRKTCKDCLAG--PSCGWCVLEGGCTEERNCANSKKKNYFISSSFDACPNMDDIEPNVAARQDSKQVSFDVINIP-TDISYQCAYNGDYKVNAKLENSKIQCSAVDFNKVPGFIASIKGDDEV---DLSLIYSNKVIATSTITLYDCTSLKMCQTCTTGSYKCNWCTDSMTCS---SSCQGPFVEGNSSDAADQCPQIKEVDSSYLPSDVSRSIKLVGNMLPAVKSSS-SYQCHLNIEGSVQSVSAKLSNPKELICDQKAFTFSGENSTTAKLDVTYGTNQIFT----NELEVLMYKCDYKRKDCSSCLASPTVLQCGWCSGTSLCGVKEQC---------LNRLTTICPNPIITKVTPPEISSGGNTKVIIEGTDLGVTTDDVLS-VTLAGLPCTKTQDS--KRNYIVC-LSSYSGGPREGSVDILVRKPSGNQTGTFPNFYYREPMVTS-FSPKIGTCSGGTTLRFKGNYLDVANQVEVTVGASPCKNLNASRELITCQTSARINCKTDXXXXXXXXNVGDDGIKVTMDQWDVPGLQGQTFKYEKNPSVFRLYTNKRNIHPKF-ITGGGQVFIVEGARFNIIQNVKIIFSTKSPLKLATFEVVCEINQEEKVICLTPNVTEVAISNKRSSFDISTDIQLDGYSQDFDEIQVL-----------PDPLFHKF-EDGVRIVKTDD-LILTGEYL-ETIASEDVKVN----IAGIPCKVTDLDRRLVCTIPPESEVLAASPYINKAPIQVLVGKGGLTYDLGFVQFFSPEDNEEQIKLIIGLTVGAXXXXXXXXXXACVYMRIRRKKRDREND---EQVRLRMDRMESQYARECKEAFAEYQTEITDLTHDVDQMKSPYLDFPQYAMRVLYPGVFEHDILK---ANINSKPEWEGSMRSLIVLLKNKDFLLNFVRTLEGQSAFQMNDRCAVASLLMVSLQDDLRYVTEILTEXXXXX--XXXXXXXXXXXXXXXTESVAEKLLTNWLAYTLHSFLENHVGEPLFNLFTAINILLEKEPVDAITSDARNSLSEDKLLRQKIDFKSISINVEYIHDGGEESFNGIPVLTCDTITQTKEKIIKFIYKDKPYSSWPCLEELELGFASASGAITIFKDEDSTSKVEGEYKKINSLQHYNVQDQTNLRLASGSAIQHXXXXXXXXXXXXXXTSMPSVNFSTS-------TPLLHHIEGNEPKLFHIVKTSDYPQEQKEDIRHSKMMAEVYLTRLLKTKETLQLFVNKLFDSIFGLHEGGRTIPPSVKYLFDFLDAQAMTLDINEDEVRHTWKNNSLPLRFWINIIKNPNFVFDIKKSNTVDSCLSVIAQLFMDSCSPDEHRLGKDSPSNKLLYAKEIPEYKKKVTKFYEDVASQD-FENEDFFQILDGISKNHGAYFNSCNAARALMEYAEAYKVQLMENLERNNH---SELYDRLQDIMSEMPDD 5582
+IY+G +N++ + S L L GP +N C+P + + C + L +N+NK+LL K +IACGS+YQGIC+ L ++ L + E Y K + Y+S G + S + F ++YS + A + +P + IS+ KL + ++E + Y F +A + +YY F G+ VYF T Q + S PP SK++++ +D N YVE+P C++ GV + +L ++ L + + V T P D +L +F G K+ A+C +++K + ++ +SC + + + + K K CS LL+ + + F G + + +V G + DR S + + +HS+ + + + G+ L ++ +++ D DH L+ +S+ + +VP+E C ++C +CL P CGWCVL CT + C SK+ F +S C + N++ Q + + + N+P C + +++ + ++IQC + +VP I GD V L + A+++ Y+C+ C +C Y+C+WC C+ +C F EG D CPQ+ VD +P +V + I L LP +S Y+C LNI+GS Q V A N + C ++++ G +++T N F + +V +YKC R+ C CL + CGWC G C +++ C L+ + C NP IT++ P G TKV I G +LG+ D+ S V +AG+ C+ D IVC + G V+I V YY + S P G SGGT + G L+ + V V G PC S I C T++ V + + V +D+ + Q F+Y ++P++ R I P++ I G V G ++IQN +I + +CE+ ++ C P +A+ S D++ + G+ D +Q L P+P+F F G+ +K +IL G+ L +A +VK+N + PC VT D +L+C P I + +V+ GG+ Y G V + +P D+ + I+ + V LI+ I V + I K++ RE+D ++++++MD +ES+ A ECKEAFAE QT+I +LT D+D P+LD+ Y MRVL+PG+ +H +L+ + E ++ L+ NK FLL+F+RTLE Q +F M DR VASL+M LQ L Y T++L +LL DL K PKLLLRRTESVAEK+LTNW + L+ FL+ GEPLF+LF AI +EK P+DAIT +AR SLSEDKL+RQ+ID+K++ ++ D + +L CDTITQ KEKI+ I+K+ P S P +++L + SGA I +DED T+K+E ++K++N+L HY V D + + L S +N N + S S + + ++ S TP++ + K++H+VK ++ +QKE R SKM++E+YLTRLL TK TLQ FV+ LF++IF G +P ++KY+FDFLD QA I++ VRHTWK+N LPLRFW+N+IKNP FVFDI K++ D+CLSV+AQ FMDSCS EHRLGKDSPSNKLLYAK+IP YK V ++Y D+ ++D L S+ H FN+ +A + Y Y +++ L+ ++ +L +L+ +++ M D
Sbjct: 62 HIYLGAVNRIYKLSSDLKVLVTHETGPDEDNPKCYPPRIVQ-TC---NEPLTTTNNVNKMLLIDYKEN-RLIACGSLYQGICKLLRLEDLFKLGEPYHKKEH---------YLS--GVNESGSVFGVIVSYSNLDDKLFIATAVDGKP--EYFPTISSRKL-----------TKNSEADGMFAYVFHDEFVASMIKIPSDTFTIIPDFDIYYVYGFSSGNFVYFLTLQPEMVS--PPGSTTKEQVYTSKLVRLCKEDTAFNSYVEVPIGCERSGVEYRLLQAAYLSK--AGAVLGRTLGVHPDDDLLFTVFSK--GQKRKMKSLDESALCIFILKQINDRIKERLQSCYRGEGTLDLAWLKVKDIPCSSALLT-IDDNFCGLDMNAPLGVSDMVRGIPVFTEDRDRMTSVIAYVYKNHSLAFVGTKSGKLKKIRVDGPRGNALQYETVQVVDPGPVLRDMAFSKDHEQLYIMSERQLTRVPVESCGQYQSCGECLGSGDPHCGWCVLHNTCTRKERCERSKEPRRF-ASEMKQCVRLTVHPNNISVSQYNVLLVLETYNVPELSAGVNCTFEDLSEMDGLVVGNQIQCYSPAAKEVPRIITE-NGDHHVVQLQLKSKETGMTFASTSFVFYNCSVHNSCLSCVESPYRCHWCKYRHVCTHDPKTCS--FQEGRVKLPED-CPQLLRVDKILVPVEVIKPITLKAKNLPQPQSGQRGYECILNIQGSEQRVPALRFNSSSVQCQNTSYSYEGMEINNLPVELTVVWNGHFNIDNPAQNKVHLYKCGAMRESCGLCLKADPDFACGWCQGPGQCTLRQHCPAQESQWLELSGAKSKCTNPRITEIIPVTGPREGGTKVTIRGENLGLEFRDIASHVKVAGVECSPLVDGYIPAEQIVCEMGEAKPSQHAGFVEICVAVCRPEFMARSSQLYYFMTLTLSDLKPSRGPMSGGTQVTITGTNLNAGSNVVVMFGKQPCLFHRRSPSYIVCNTTS-------------SDEVLEMKVSVQVDRAKIH--QDLVFQYVEDPTIVR-------IEPEWSIVSGNTPIAVWGTHLDLIQNPQIRAKHGGKEHIN----ICEVLNATEMTCQAP---ALALGPDHQS-DLTERPEEFGFI--LDNVQSLLILNKTNFTYYPNPVFEAFGPSGILELKPGTPIILKGKNLIPPVAGGNVKLNYTVLVGEKPCTVTVSDVQLLCESP---------NLIGRH--KVMARVGGMEYSPGMV-YIAP-DSPLSLPAIVSIAVAGGLLIIFI-----VAVLIAYKRKSRESDLTLKRLQMQMDNLESRVALECKEAFAELQTDIHELTSDLDGAGIPFLDYRTYTMRVLFPGIEDHPVLRDLEVPGYRQERVEKGLKLFAQLINNKVFLLSFIRTLESQRSFSMRDRGNVASLIMTVLQSKLEYATDVLKQLLADLIDKNLESKNHPKLLLRRTESVAEKMLTNWFTFLLYKFLKECAGEPLFSLFCAIKQQMEKGPIDAITGEARYSLSEDKLIRQQIDYKTLVLSC-VSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVVALVSKQVTAYNAVNNSTVSRTSASKYENMIRYTGSPDSLRSRTPMITPDLESGVKMWHLVKNHEH-GDQKEGDRGSKMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDEQADKHGIHDPHVRHTWKSNCLPLRFWVNMIKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPSYKNWVERYYSDIGKMPAISDQDMNAYLAEQSRMHMNEFNTMSALSEIFSYVGKYSEEILGPLDHDDQCGKQKLAYKLEQVITLMSLD 1893 The following BLAST results are available for this feature:
BLAST of TCONS_00064915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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