TCONS_00064909 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064909
Unique NameTCONS_00064909
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064909 ID=TCONS_00064909|Name=TCONS_00064909|organism=Clytia hemisphaerica|type=transcript|length=506bp
TTATCCATCAACAAGTTTATATTGAAGCAAACAAATCCCATTTGATTCAC
TTTAAATCAGGCTGTCAGTTATCATCCATTCAACTGTCAGTTACCGTCCG
TCAAacatcataataataataatcataTCCAGATATCATAACATAACTTA
TCAGAATCAAGCATATGCATGATGCACGCTATGCATGCAGCACACGCACG
TATTACGTGATTAATATATTGTACTTGATCATCAAGCCGTTGTTCCCTTG
TTTCTTCCATCCACTTGATTAAGCTGATTTTTCTAGTCTTTACCAGCTGT
GACTGTTCCATGCCATTTCCAGAAGAATTGTGAATTTAGGAAAATCAAAT
CTTCCAGTACTCGCTCCTCAAAGCAACACCAACAGGTGAATTAGGTAGct
acagtttcaaaattttgaagaataagGTACAAAACTGAACCATCATAGTT
CCTAGATATATTTGTTCTGTTTAACTGTTTTTGACAGCTGCAATGCAAGC
AGGCAA
Run BLAST on NCBI

transcript from alignment at scaffold_425:436627..437132

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064909 ID=TCONS_00064909|Name=TCONS_00064909|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at scaffold_425:436627..437132 (Clytia hemisphaerica)
TTGCCTGCTTGCATTGCAGCTGTCAAAAACAGTTAAACAGAACAAATATA
TCTAGGAACTATGATGGTTCAGTTTTGTACcttattcttcaaaattttga
aactgtagCTACCTAATTCACCTGTTGGTGTTGCTTTGAGGAGCGAGTAC
TGGAAGATTTGATTTTCCTAAATTCACAATTCTTCTGGAAATGGCATGGA
ACAGTCACAGCTGGTAAAGACTAGAAAAATCAGCTTAATCAAGTGGATGG
AAGAAACAAGGGAACAACGGCTTGATGATCAAGTACAATATATTAATCAC
GTAATACGTGCGTGTGCTGCATGCATAGCGTGCATCATGCATATGCTTGA
TTCTGATAAGTTATGTTATGATATCTGGAtatgattattattattatgat
gtTTGACGGACGGTAACTGACAGTTGAATGGATGATAACTGACAGCCTGA
TTTAAAGTGAATCAAATGGGATTTGTTTGCTTCAATATAAACTTGTTGAT
GGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040714XLOC_040714Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064909-exon-scaffold_425-1491911889:436627..437132TCONS_00064909-exon-scaffold_425-1491911889:436627..437132Clytia hemisphaericaexon
TCONS_00064909-exon-scaffold_425-1510915933:436627..437132TCONS_00064909-exon-scaffold_425-1510915933:436627..437132Clytia hemisphaericaexon
TCONS_00064909-exon-scaffold_425-1575043694:436627..437132TCONS_00064909-exon-scaffold_425-1575043694:436627..437132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:436627..437132 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35593	1.04022	1.08826	0.640299	7.27983	5.89539	3.01641	3.06625	1.71473	5.08028	1.47832	2.13229	1.76256	0.879197	1.20279	1.29271	1.00544	1.28208	2.11274	2.41984	1.52803	0.929176	0.215841	0.910989	0.897573	1.54133	1.47519	0	1.65355	1.72838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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