TCONS_00064903 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064903
Unique NameTCONS_00064903
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064903 ID=TCONS_00064903|Name=TCONS_00064903|organism=Clytia hemisphaerica|type=transcript|length=1829bp
GAGTCATTATTCGACGGGAAATACTCTAATTGAAATCATTCAAATTAATT
ATTTCACAAATCAAAGCGAAAACAATAATCTATGACGATGAATGTGTCAA
TTGATGAGAAATGATTTAAAGCTAATCAAAAACTGTCTTCCATTTGACTG
AAAAGTTTATATTGTAAACGAAAGTTAAATTCGTTTGTTGTTCCAAAAAG
TCACTTAAAATCTAAATTCATTAAATTCAAAGCAACTGAATACAAAATAT
TTCTGCCTAAGCCAATGAAATAGGGAACAATTCTGAATATTTAATAAATA
TGATAAATTATTCTAAATgctaatttaagaaatttgaaaaaaaaagcaat
tttaaaTACctaattaaattgaaaaaaacacatAAAGTTTCCTTCCACTC
CAGGTTGCGGAATTTGCTCAGAGTTGGAAATGAGTCTAATACACGTGCAG
CGATGAGGCTACAACGCATCCGTTTTACGAACAAATGCGAAATTCTACAC
AAAGGTGTACTAACGCAATATCTGGCTGTGTATCACTTTAATTGCGTCAT
CATTTATTGAtgagttttattttgtttggaatattttgactttattaatt
ttatcttattttttccgggggttCTTGCTTGGAAAACATTGGGGAACACA
AAtgttttgccaccaataatggaGGATAAGTAGATTCTTTGATTCACTTT
AAGTAAACATTTTACACAGACAGACCGCAATCTCATTAAACTTGAACAAC
AAAGTTGATATCTCAGGGCATGTACCACTCGTAAACAAAGAAAACGTTAT
ATTCAATCCATCACCCGAAATGTGGCGTAAATCCTACTGCATTAAAGATT
TGCTTCTAGCCTTAAATTCCATTGAAGACGATCCTTTCGAGACAATAATa
gatcaaaaattcaaaatttgaaaaacatctTCAACCGAGATACTAAATAG
GGATACCTAAAAATACTAATGAAATTTACCACATGATTCTTTGTCCAGTA
TGTCCATCTTGAGTGTGTGTCCGAGTCAAGAAGATGTTCATCGTCAAATA
GTTCACTACACCATAAACCAACCCTTCTACCAACAATTCTAACCAGGTCG
ATGGTCGCAAATTTAAGCGGAAAATCAAATATGGGATGATAAAATAACGG
AACTCTAATAACTTCTGTGGAACTAAGACAATAGCTGTGCATGCGAAGAA
GACAAGGATCCAGAGGCTTGATCGCCTGTAGGAAAGCTCGTTGATCATGA
CCAAGGTGGATACTGCGTAAATAGGAATTAGGTAATACTTGACATCGTGG
TGATAGCCGAATATTTTCTTCCAAATGTAGAAAGTAAAGTGACGGTTATC
GGAGATCAGGTATAAATGCTGATAAGTATAATGGTGAACGGCATAAAACA
TACCAGCACTGAGAACGATTAAGCATAACAAGTTTATAGGTGATGTAATG
AAGTTCCAAaccattttcaaggttttaagGATATTCAAATATCTCAATGC
AACGAATGATGAAAAACATATGgtgaaaacagaaaaatataaaatttgtg
GAAAATTGAGGCAAGCTTCATGCGACGTACGATCGCCGACCACGATTCCG
TCGTTTTTGATAACAAATCCTACAAAACCAACCAGCACAAAAACATACGG
AACTGCAATCCAAATCGAAGATAAAAGCATTGATAAACATCCTAAAACGG
CATCGAATATTTGACGGACCAGAGAGTCGTCTTTGCCCAACTTTCCATTT
CGTCTTAAATGGTTTAGGAGTGCACAAATACAACAGAATCCAACCCATAC
GATATTCGTTTGGCGAAAGAAGATTGCGA
Run BLAST on NCBI

protein sequence of TCONS_00064903-protein

>TCONS_00064903-protein ID=TCONS_00064903-protein|Name=TCONS_00064903-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
AIFFRQTNIVWVGFCCICALLNHLRRNGKLGKDDSLVRQIFDAVLGCLSM
LLSSIWIAVPYVFVLVGFVGFVIKNDGIVVGDRTSHEACLNFPQILYFSV
FTICFSSFVALRYLNILKTLKMVWNFITSPINLLCLIVLSAGMFYAVHHY
TYQHLYLISDNRHFTFYIWKKIFGYHHDVKYYLIPIYAVSTLVMINELSY
RRSSLWILVFFACTAIVLVPQKLLEFRYFIIPYLIFRLNLRPSTWLELLV
EGLVYGVVNYLTMNIFLTRTHTQDGHTGQRIMW
Run BLAST on NCBI

transcript from alignment at scaffold_425:351147..352975

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064903 ID=TCONS_00064903|Name=TCONS_00064903|organism=Clytia hemisphaerica|type=transcript|length=1829bp|location=Sequence derived from alignment at scaffold_425:351147..352975 (Clytia hemisphaerica)
TCGCAATCTTCTTTCGCCAAACGAATATCGTATGGGTTGGATTCTGTTGT
ATTTGTGCACTCCTAAACCATTTAAGACGAAATGGAAAGTTGGGCAAAGA
CGACTCTCTGGTCCGTCAAATATTCGATGCCGTTTTAGGATGTTTATCAA
TGCTTTTATCTTCGATTTGGATTGCAGTTCCGTATGTTTTTGTGCTGGTT
GGTTTTGTAGGATTTGTTATCAAAAACGACGGAATCGTGGTCGGCGATCG
TACGTCGCATGAAGCTTGCCTCAATTTTCcacaaattttatatttttctg
ttttcacCATATGTTTTTCATCATTCGTTGCATTGAGATATTTGAATATC
cttaaaaccttgaaaatggtTTGGAACTTCATTACATCACCTATAAACTT
GTTATGCTTAATCGTTCTCAGTGCTGGTATGTTTTATGCCGTTCACCATT
ATACTTATCAGCATTTATACCTGATCTCCGATAACCGTCACTTTACTTTC
TACATTTGGAAGAAAATATTCGGCTATCACCACGATGTCAAGTATTACCT
AATTCCTATTTACGCAGTATCCACCTTGGTCATGATCAACGAGCTTTCCT
ACAGGCGATCAAGCCTCTGGATCCTTGTCTTCTTCGCATGCACAGCTATT
GTCTTAGTTCCACAGAAGTTATTAGAGTTCCGTTATTTTATCATCCCATA
TTTGATTTTCCGCTTAAATTTGCGACCATCGACCTGGTTAGAATTGTTGG
TAGAAGGGTTGGTTTATGGTGTAGTGAACTATTTGACGATGAACATCTTC
TTGACTCGGACACACACTCAAGATGGACATACTGGACAAAGAATCATGTG
GTAAATTTCATTAGTATTTTTAGGTATCCCTATTTAGTATCTCGGTTGAa
gatgtttttcaaattttgaatttttgatctATTATTGTCTCGAAAGGATC
GTCTTCAATGGAATTTAAGGCTAGAAGCAAATCTTTAATGCAGTAGGATT
TACGCCACATTTCGGGTGATGGATTGAATATAACGTTTTCTTTGTTTACG
AGTGGTACATGCCCTGAGATATCAACTTTGTTGTTCAAGTTTAATGAGAT
TGCGGTCTGTCTGTGTAAAATGTTTACTTAAAGTGAATCAAAGAATCTAC
TTATCCtccattattggtggcaaaacaTTTGTGTTCCCCAATGTTTTCCA
AGCAAGaacccccggaaaaaataagataaaattaataaagtcaaaatatt
ccaaacaaaataaaactcaTCAATAAATGATGACGCAATTAAAGTGATAC
ACAGCCAGATATTGCGTTAGTACACCTTTGTGTAGAATTTCGCATTTGTT
CGTAAAACGGATGCGTTGTAGCCTCATCGCTGCACGTGTATTAGACTCAT
TTCCAACTCTGAGCAAATTCCGCAACCTGGAGTGGAAGGAAACTTTatgt
gtttttttcaatttaattagGTAtttaaaattgctttttttttcaaattt
cttaaattagcATTTAGAATAATTTATCATATTTATTAAATATTCAGAAT
TGTTCCCTATTTCATTGGCTTAGGCAGAAATATTTTGTATTCAGTTGCTT
TGAATTTAATGAATTTAGATTTTAAGTGACTTTTTGGAACAACAAACGAA
TTTAACTTTCGTTTACAATATAAACTTTTCAGTCAAATGGAAGACAGTTT
TTGATTAGCTTTAAATCATTTCTCATCAATTGACACATTCATCGTCATAG
ATTATTGTTTTCGCTTTGATTTGTGAAATAATTAATTTGAATGATTTCAA
TTAGAGTATTTCCCGTCGAATAATGACTC

Coding sequence (CDS) from alignment at scaffold_425:351147..352975

>TCONS_00064903 ID=TCONS_00064903|Name=TCONS_00064903|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_425:351147..352975 (Clytia hemisphaerica)
GCAATCTTCTTTCGCCAAACGAATATCGTATGGGTTGGATTCTGTTGTAT
TTGTGCACTCCTAAACCATTTAAGACGAAATGGAAAGTTGGGCAAAGACG
ACTCTCTGGTCCGTCAAATATTCGATGCCGTTTTAGGATGTTTATCAATG
CTTTTATCTTCGATTTGGATTGCAGTTCCGTATGTTTTTGTGCTGGTTGG
TTTTGTAGGATTTGTTATCAAAAACGACGGAATCGTGGTCGGCGATCGTA
CGTCGCATGAAGCTTGCCTCAATTTTCcacaaattttatatttttctgtt
ttcacCATATGTTTTTCATCATTCGTTGCATTGAGATATTTGAATATCct
taaaaccttgaaaatggtTTGGAACTTCATTACATCACCTATAAACTTGT
TATGCTTAATCGTTCTCAGTGCTGGTATGTTTTATGCCGTTCACCATTAT
ACTTATCAGCATTTATACCTGATCTCCGATAACCGTCACTTTACTTTCTA
CATTTGGAAGAAAATATTCGGCTATCACCACGATGTCAAGTATTACCTAA
TTCCTATTTACGCAGTATCCACCTTGGTCATGATCAACGAGCTTTCCTAC
AGGCGATCAAGCCTCTGGATCCTTGTCTTCTTCGCATGCACAGCTATTGT
CTTAGTTCCACAGAAGTTATTAGAGTTCCGTTATTTTATCATCCCATATT
TGATTTTCCGCTTAAATTTGCGACCATCGACCTGGTTAGAATTGTTGGTA
GAAGGGTTGGTTTATGGTGTAGTGAACTATTTGACGATGAACATCTTCTT
GACTCGGACACACACTCAAGATGGACATACTGGACAAAGAATCATGTGGT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040708XLOC_040708Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064903-proteinTCONS_00064903-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064903-exon-scaffold_425-1491911889:351147..352975TCONS_00064903-exon-scaffold_425-1491911889:351147..352975Clytia hemisphaericaexon
TCONS_00064903-exon-scaffold_425-1510915933:351147..352975TCONS_00064903-exon-scaffold_425-1510915933:351147..352975Clytia hemisphaericaexon
TCONS_00064903-exon-scaffold_425-1575043694:351147..352975TCONS_00064903-exon-scaffold_425-1575043694:351147..352975Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:351147..352975 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.58444	4.89316	1.81701	1.61932	1.69346	1.33023	4.92127	5.25992	2.46642	3.01487	1.92991	2.07971	1.30976	1.23118	1.42529	2.12067	2.36307	2.46595	0.801701	0.938924	2.26127	2.75813	5.87879	5.12257	0.954539	1.32733	1.13986	0.805293	3.42072	3.6025
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016900Alg10
Vocabulary: Biological Process
TermDefinition
GO:0006488dolichol-linked oligosaccharide biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004583dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005789endoplasmic reticulum membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006488 dolichol-linked oligosaccharide biosynthetic process
cellular_component GO:0005789 endoplasmic reticulum membrane
molecular_function GO:0004583 dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity
Blast
[Close]
BLAST of TCONS_00064903 vs. Swiss-Prot (Human)
Match: AG10A (Dol-P-Glc:::Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase OS=Homo sapiens GN=ALG10 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.340e-39
Identity = 119/299 (39.80%), Postives = 161/299 (53.85%), Query Frame = -3 
Query:  979 FRQTNIVWVGFCC---ICALLNHLRRNGKLGKDDSL---------VRQIFDAVLG------CLSMLLSSIWIAVPYXXXXXXXXXXVIKNDGIVVGDRTSHEACLNFPQILYFSVFTICFSSFVALRYLNILKTLKMVWNFITSPINLLCLIVLSAGMFYAVHHYTYQHLYLISDNRHFTFYIWKKIFGYHHDVKYYLIPIYAVSTLVMINELSYRRSSLWILVFFACTAIVLVPQKLLEFRYFIIPYLIFRLNLRPSTWXXXXXXXXXXXXXXXLTMNIFLTRTHT-QDGHTGQRIMW 1818
            FRQTNI+W  FC    I   L    +     K+D L          R+I   +L        LSMLL   W   PY+ +   F  FV+ N GIV+GDR+SHEACL+FPQ+ YF  FT+ FS    L    I   L +VW         +   V++    + V  +TY H YL++DNRH+TFY+WK++F  +  VKY L+P Y  +   + + L   +S  W L+FF C   V+VPQKLLEFRYFI+PY+I+RLN+       L+ E   Y VVN++T  IFL +T    +    QR MW
Sbjct:  185 FRQTNIIWAVFCAGNVIAQKLTEAWKTELQKKEDRLPPIKGPFAEFRKILQFLLAYSMSFKNLSMLLLLTW---PYILLGFLFCAFVVVNGGIVIGDRSSHEACLHFPQLFYFFSFTLFFSFPHLLSPSKIKTFLSLVWK------RRILFFVVTLVSVFLVWKFTYAHKYLLADNRHYTFYVWKRVFQRYETVKYLLVPAYIFAGWSIADSLK-SKSIFWNLMFFICLFTVIVPQKLLEFRYFILPYVIYRLNIPLPPTSRLICELSCYAVVNFITFFIFLNKTFQWPNSQDIQRFMW 473
The following BLAST results are available for this feature:
BLAST of TCONS_00064903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AG10A8.340e-3939.80Dol-P-Glc:::Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2... [more]
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