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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064901 ID=TCONS_00064901|Name=TCONS_00064901|organism=Clytia hemisphaerica|type=transcript|length=1747bp
CAATAAAAGTTACAAAGATTTGATAGTTTCATATTTTCCAAACATGCAAG
CCAATAGTTTTTCAATCATTTAAAACTCAGTTCCTTTGTACCCAATACAA
TGCCAGCAATTTAAACGGTTGCAACGGTCGAACCTTCTTTTCAATCTTTG
TAATCGAGAAAGATTCGAATCCCAAAACTTTTTGCGCCAATCAGATTCCG
TTTTGCTGCCATGGTTGTAGCCTGATCCTAGTCCTGGCACCAGTTGATCG
ATAATCTTTAAAAAGCTGTCATCGAAAGTTTCAATCATCCAAAGGGCTTC
TCTTAGTTTTGGACTGACTGCCGTGTCTTGATGAGGAACGTTGCTTACAG
CACCACCTAAGATATAACTAGACACGAATTTTCCAGTTTGGAGAGTCTCT
TTAAAGAGACGTTTGAGGATTCCTGCAGCTGCTCGTGGGTTCTCTTTGAT
CCATTTCTTTGGAATCAAACGATTGCCAATATCCTTTGTAGAAGAAGCAA
TTGCTGTATTATCGAGCTGAAAGAACTGTGCGAGAACTCTGCTGGCTTCT
GAAACCCCAGGAAAGTCTTGTAGCAGTATGAAGACGTTCTGATGAAAAGC
TTCGTTGAATTGACTCCTCCAGGCGAAGAGGTCGTTAATCAGTGTAGCTT
CAGCTTCTTTTCGATCTCCTTCAAAGAACAATGCAAGCGAAGTACCGTTC
CATAAACCACCCCATCGGTTGTCAAGCGTCGTCGATTTCACCGCCCAAAA
GTCCATGAAACTATGCACTATTCTCAAGTATTGTTCAAAAGGGATTTGGA
TTGGAGAAAGTCCAAGTGCGAGAAAAGTGATTGGCTTCTTGGGTAAGAGA
CGATATTGTGTTGATACAACCACGCCAAAAGTGCCGCCTCCTCCACCACG
TAACGCCCaaaacaaatctttgtttcGACATGCATCAGCTGTGACAACAC
ATCCATTTGGTTGAACCACTTTGAAGCTGATCACATTGTCAACACCAAGA
CCATGTTGACGAGATAAAGGAGATAAACCACTCCCTTGTAGCCAGCCACC
TGCTGCAGAAACGACTGGTGCCAAAGCTCCCATAATGTTGTACTCGGTAC
CGGCAATTTTACTGTAGATTTCGGACCAAATTTGACCTCCGCCAATTTTG
ATGGATGCTGGGTACTTTATGTGAcaggaatcttcgaaaattgTGGAAAT
ATCGCCAAACTTCTGAAAGTTTCTCATCCAGATCATTAAAGTATCGCGTC
CGAAACTTGATCCAGAGAAAGAATGACCGGTCGTTTTCACGGTGACTGCA
ATATTGAATCTGTTGGCAAATTTGAAAGCACGAACAATATCTCTTGTTGT
TTTTGCTTCAACACTGTATGATGGGAGATTGGAAGGTTGGTCGGCcagac
aaaatctttttgagCATTCTGGAATCTGCATACATGCGCCATTTGCAGAT
TCACCAAGCACCATTGAACTGTTTATATTTTGACATTGTAAAAGTACGGA
TGGATCAAATTTATGAAGTTTTCCATCCAAACAGCTACCAAGACGACGTT
TCCAGACATTTTCTGATGGCCAGCAATATTTGTTTTTTGGTGTGCAATAA
CCTTTGATCAATTCTAACTGAATCGTCAGGACTACTAGTAAAGAAATAAT
TGAAGAACTTCGAAGGTTCATTGTTAGCACTGACTTCTTAAACTTCTGAA
TGAAATAACTGACTGGAGTGAGCTCGTTTTATACCTGTTTAGCGAAG Run BLAST on NCBI protein sequence of TCONS_00064901-protein >TCONS_00064901-protein ID=TCONS_00064901-protein|Name=TCONS_00064901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=533bp
MNLRSSSIISLLVVLTIQLELIKGYCTPKNKYCWPSENVWKRRLGSCLDG
KLHKFDPSVLLQCQNINSSMVLGESANGACMQIPECSKRFCLADQPSNLP
SYSVEAKTTRDIVRAFKFANRFNIAVTVKTTGHSFSGSSFGRDTLMIWMR
NFQKFGDISTIFEDSCHIKYPASIKIGGGQIWSEIYSKIAGTEYNIMGAL
APVVSAAGGWLQGSGLSPLSRQHGLGVDNVISFKVVQPNGCVVTADACRN
KDLFWALRGGGGGTFGVVVSTQYRLLPKKPITFLALGLSPIQIPFEQYLR
IVHSFMDFWAVKSTTLDNRWGGLWNGTSLALFFEGDRKEAEATLINDLFA
WRSQFNEAFHQNVFILLQDFPGVSEASRVLAQFFQLDNTAIASSTKDIGN
RLIPKKWIKENPRAAAGILKRLFKETLQTGKFVSSYILGGAVSNVPHQDT
AVSPKLREALWMIETFDDSFLKIIDQLVPGLGSGYNHGSKTESDWRKKFW
DSNLSRLQRLKRRFDRCNRLNCWHCIGYKGTEF Run BLAST on NCBI transcript from alignment at scaffold_425:325340..327086 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064901 ID=TCONS_00064901|Name=TCONS_00064901|organism=Clytia hemisphaerica|type=transcript|length=1747bp|location=Sequence derived from alignment at scaffold_425:325340..327086 (Clytia hemisphaerica)
CTTCGCTAAACAGGTATAAAACGAGCTCACTCCAGTCAGTTATTTCATTC
AGAAGTTTAAGAAGTCAGTGCTAACAATGAACCTTCGAAGTTCTTCAATT
ATTTCTTTACTAGTAGTCCTGACGATTCAGTTAGAATTGATCAAAGGTTA
TTGCACACCAAAAAACAAATATTGCTGGCCATCAGAAAATGTCTGGAAAC
GTCGTCTTGGTAGCTGTTTGGATGGAAAACTTCATAAATTTGATCCATCC
GTACTTTTACAATGTCAAAATATAAACAGTTCAATGGTGCTTGGTGAATC
TGCAAATGGCGCATGTATGCAGATTCCAGAATGctcaaaaagattttgtc
tgGCCGACCAACCTTCCAATCTCCCATCATACAGTGTTGAAGCAAAAACA
ACAAGAGATATTGTTCGTGCTTTCAAATTTGCCAACAGATTCAATATTGC
AGTCACCGTGAAAACGACCGGTCATTCTTTCTCTGGATCAAGTTTCGGAC
GCGATACTTTAATGATCTGGATGAGAAACTTTCAGAAGTTTGGCGATATT
TCCAcaattttcgaagattcctgTCACATAAAGTACCCAGCATCCATCAA
AATTGGCGGAGGTCAAATTTGGTCCGAAATCTACAGTAAAATTGCCGGTA
CCGAGTACAACATTATGGGAGCTTTGGCACCAGTCGTTTCTGCAGCAGGT
GGCTGGCTACAAGGGAGTGGTTTATCTCCTTTATCTCGTCAACATGGTCT
TGGTGTTGACAATGTGATCAGCTTCAAAGTGGTTCAACCAAATGGATGTG
TTGTCACAGCTGATGCATGTCgaaacaaagatttgttttGGGCGTTACGT
GGTGGAGGAGGCGGCACTTTTGGCGTGGTTGTATCAACACAATATCGTCT
CTTACCCAAGAAGCCAATCACTTTTCTCGCACTTGGACTTTCTCCAATCC
AAATCCCTTTTGAACAATACTTGAGAATAGTGCATAGTTTCATGGACTTT
TGGGCGGTGAAATCGACGACGCTTGACAACCGATGGGGTGGTTTATGGAA
CGGTACTTCGCTTGCATTGTTCTTTGAAGGAGATCGAAAAGAAGCTGAAG
CTACACTGATTAACGACCTCTTCGCCTGGAGGAGTCAATTCAACGAAGCT
TTTCATCAGAACGTCTTCATACTGCTACAAGACTTTCCTGGGGTTTCAGA
AGCCAGCAGAGTTCTCGCACAGTTCTTTCAGCTCGATAATACAGCAATTG
CTTCTTCTACAAAGGATATTGGCAATCGTTTGATTCCAAAGAAATGGATC
AAAGAGAACCCACGAGCAGCTGCAGGAATCCTCAAACGTCTCTTTAAAGA
GACTCTCCAAACTGGAAAATTCGTGTCTAGTTATATCTTAGGTGGTGCTG
TAAGCAACGTTCCTCATCAAGACACGGCAGTCAGTCCAAAACTAAGAGAA
GCCCTTTGGATGATTGAAACTTTCGATGACAGCTTTTTAAAGATTATCGA
TCAACTGGTGCCAGGACTAGGATCAGGCTACAACCATGGCAGCAAAACGG
AATCTGATTGGCGCAAAAAGTTTTGGGATTCGAATCTTTCTCGATTACAA
AGATTGAAAAGAAGGTTCGACCGTTGCAACCGTTTAAATTGCTGGCATTG
TATTGGGTACAAAGGAACTGAGTTTTAAATGATTGAAAAACTATTGGCTT
GCATGTTTGGAAAATATGAAACTATCAAATCTTTGTAACTTTTATTG Coding sequence (CDS) from alignment at scaffold_425:325340..327086 >TCONS_00064901 ID=TCONS_00064901|Name=TCONS_00064901|organism=Clytia hemisphaerica|type=CDS|length=1602bp|location=Sequence derived from alignment at scaffold_425:325340..327086 (Clytia hemisphaerica)
ATGAACCTTCGAAGTTCTTCAATTATTTCTTTACTAGTAGTCCTGACGAT
TCAGTTAGAATTGATCAAAGGTTATTGCACACCAAAAAACAAATATTGCT
GGCCATCAGAAAATGTCTGGAAACGTCGTCTTGGTAGCTGTTTGGATGGA
AAACTTCATAAATTTGATCCATCCGTACTTTTACAATGTCAAAATATAAA
CAGTTCAATGGTGCTTGGTGAATCTGCAAATGGCGCATGTATGCAGATTC
CAGAATGctcaaaaagattttgtctgGCCGACCAACCTTCCAATCTCCCA
TCATACAGTGTTGAAGCAAAAACAACAAGAGATATTGTTCGTGCTTTCAA
ATTTGCCAACAGATTCAATATTGCAGTCACCGTGAAAACGACCGGTCATT
CTTTCTCTGGATCAAGTTTCGGACGCGATACTTTAATGATCTGGATGAGA
AACTTTCAGAAGTTTGGCGATATTTCCAcaattttcgaagattcctgTCA
CATAAAGTACCCAGCATCCATCAAAATTGGCGGAGGTCAAATTTGGTCCG
AAATCTACAGTAAAATTGCCGGTACCGAGTACAACATTATGGGAGCTTTG
GCACCAGTCGTTTCTGCAGCAGGTGGCTGGCTACAAGGGAGTGGTTTATC
TCCTTTATCTCGTCAACATGGTCTTGGTGTTGACAATGTGATCAGCTTCA
AAGTGGTTCAACCAAATGGATGTGTTGTCACAGCTGATGCATGTCgaaac
aaagatttgttttGGGCGTTACGTGGTGGAGGAGGCGGCACTTTTGGCGT
GGTTGTATCAACACAATATCGTCTCTTACCCAAGAAGCCAATCACTTTTC
TCGCACTTGGACTTTCTCCAATCCAAATCCCTTTTGAACAATACTTGAGA
ATAGTGCATAGTTTCATGGACTTTTGGGCGGTGAAATCGACGACGCTTGA
CAACCGATGGGGTGGTTTATGGAACGGTACTTCGCTTGCATTGTTCTTTG
AAGGAGATCGAAAAGAAGCTGAAGCTACACTGATTAACGACCTCTTCGCC
TGGAGGAGTCAATTCAACGAAGCTTTTCATCAGAACGTCTTCATACTGCT
ACAAGACTTTCCTGGGGTTTCAGAAGCCAGCAGAGTTCTCGCACAGTTCT
TTCAGCTCGATAATACAGCAATTGCTTCTTCTACAAAGGATATTGGCAAT
CGTTTGATTCCAAAGAAATGGATCAAAGAGAACCCACGAGCAGCTGCAGG
AATCCTCAAACGTCTCTTTAAAGAGACTCTCCAAACTGGAAAATTCGTGT
CTAGTTATATCTTAGGTGGTGCTGTAAGCAACGTTCCTCATCAAGACACG
GCAGTCAGTCCAAAACTAAGAGAAGCCCTTTGGATGATTGAAACTTTCGA
TGACAGCTTTTTAAAGATTATCGATCAACTGGTGCCAGGACTAGGATCAG
GCTACAACCATGGCAGCAAAACGGAATCTGATTGGCGCAAAAAGTTTTGG
GATTCGAATCTTTCTCGATTACAAAGATTGAAAAGAAGGTTCGACCGTTG
CAACCGTTTAAATTGCTGGCATTGTATTGGGTACAAAGGAACTGAGTTTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064901-exon-scaffold_425-1491911889:325340..327086 | TCONS_00064901-exon-scaffold_425-1491911889:325340..327086 | Clytia hemisphaerica | exon |
| TCONS_00064901-exon-scaffold_425-1510915933:325340..327086 | TCONS_00064901-exon-scaffold_425-1510915933:325340..327086 | Clytia hemisphaerica | exon |
| TCONS_00064901-exon-scaffold_425-1575043694:325340..327086 | TCONS_00064901-exon-scaffold_425-1575043694:325340..327086 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:325340..327086 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0003824 | catalytic activity |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0050660 |
flavin adenine dinucleotide binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016614 |
oxidoreductase activity, acting on CH-OH group of donors |
Blast
The following BLAST results are available for this feature:
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