TCONS_00064899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064899
Unique NameTCONS_00064899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1048

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064899 ID=TCONS_00064899|Name=TCONS_00064899|organism=Clytia hemisphaerica|type=transcript|length=1048bp
tttaggcttcctgcggtggcaaatACAAAccacaaaaaatgtttttcagt
gCATACTACATTTATTTCTTCCATTTCAGTcacaataaaaaatatacaaa
taacTATGGCTTCCAATGACGATCAAATAAAAGAACTTTTCCAAGCAGCT
GATAAAAGTGGAGACGGAAAAATCTCAACCAGGGAACTCGGTAAAATGTT
CAAATCGATCGGTGTGAAACTTTCCGTCAAAGATGTCAAGTCGCTAGTCT
ATAAATTCGATGCAGACGGGAGTCGAGATATTGACTTGAATGAATTCCGC
GCGCTCATCACGGACGTTTTGAACGCGAACAAACAATACGAAGAAGCGTA
CGAAGTGTTCAAGATTTTCGATCAAAATGGTGACAACACGATCACAGTGG
AAGAAGCGAAACGCGCATGCGCTAATCTCCCTAAACCGTTGAGTGATGAT
GAATTTGTTGAATTCATGAAACGTTTAGATACTGATGGTAATGGAGTCGT
TCTTTTTGATGAATTTGCAAAAGCCTATGCTTGCGGGTTATAAAAAGTTG
CTCTAGTTCTACAGTCCGATATTGTGGGTTCAATTCGACTGTATCTCCTT
TGTAAGATGGAGGAAATATCTTGAGAAACAATAATTTGGTGGTTACGAGC
AAGCGCCTTCCAAGAGCATAATCATCATGTGAGATTTGGGTTTTTGGGAC
AAAGACAGTTTTCTAGTTttcttaagggaagaaattttgacggaaagaaa
atttggcgggtTTGGGGAATTTAATCaaaatccacgaaattaagaCCCCG
CcagattaaaattttcaagccaTCCGCTGAATTAAATTTCCTCTGaatgt
gaaaaactttttcacttaTCCGCAAAATTGAATCCCTGTCAGAATTTCTT
CCCTATTATTTATTGAATTAATTAAATTAGGGAGATTTTACTTACCTAAT
GGGAAAATTTTATGAATAATGatttatataccgggtgcagcagaaaaaac
tttggacgtttggcgagccactgaggccgaacaaagtcttgtttagac
Run BLAST on NCBI

protein sequence of TCONS_00064899-protein

>TCONS_00064899-protein ID=TCONS_00064899-protein|Name=TCONS_00064899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
FRLPAVANTNHKKCFSVHTTFISSISVTIKNIQITMASNDDQIKELFQAA
DKSGDGKISTRELGKMFKSIGVKLSVKDVKSLVYKFDADGSRDIDLNEFR
ALITDVLNANKQYEEAYEVFKIFDQNGDNTITVEEAKRACANLPKPLSDD
EFVEFMKRLDTDGNGVVLFDEFAKAYACGL
Run BLAST on NCBI

transcript from alignment at scaffold_425:244994..246041

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064899 ID=TCONS_00064899|Name=TCONS_00064899|organism=Clytia hemisphaerica|type=transcript|length=1048bp|location=Sequence derived from alignment at scaffold_425:244994..246041 (Clytia hemisphaerica)
gtctaaacaagactttgttcggcctcagtggctcgccaaacgtccaaagt
tttttctgctgcacccggtatataaatCATTATTCATAAAATTTTCCCAT
TAGGTAAGTAAAATCTCCCTAATTTAATTAATTCAATAAATAATAGGGAA
GAAATTCTGACAGGGATTCAATTTTGCGGAtaagtgaaaaagtttttcac
attCAGAGGAAATTTAATTCAGCGGAtggcttgaaaattttaatctgGCG
GGGtcttaatttcgtggattttGATTAAATTCCCCAAacccgccaaattt
tctttccgtcaaaatttcttcccttaagaaAACTAGAAAACTGTCTTTGT
CCCAAAAACCCAAATCTCACATGATGATTATGCTCTTGGAAGGCGCTTGC
TCGTAACCACCAAATTATTGTTTCTCAAGATATTTCCTCCATCTTACAAA
GGAGATACAGTCGAATTGAACCCACAATATCGGACTGTAGAACTAGAGCA
ACTTTTTATAACCCGCAAGCATAGGCTTTTGCAAATTCATCAAAAAGAAC
GACTCCATTACCATCAGTATCTAAACGTTTCATGAATTCAACAAATTCAT
CATCACTCAACGGTTTAGGGAGATTAGCGCATGCGCGTTTCGCTTCTTCC
ACTGTGATCGTGTTGTCACCATTTTGATCGAAAATCTTGAACACTTCGTA
CGCTTCTTCGTATTGTTTGTTCGCGTTCAAAACGTCCGTGATGAGCGCGC
GGAATTCATTCAAGTCAATATCTCGACTCCCGTCTGCATCGAATTTATAG
ACTAGCGACTTGACATCTTTGACGGAAAGTTTCACACCGATCGATTTGAA
CATTTTACCGAGTTCCCTGGTTGAGATTTTTCCGTCTCCACTTTTATCAG
CTGCTTGGAAAAGTTCTTTTATTTGATCGTCATTGGAAGCCATAgttatt
tgtatattttttattgtgACTGAAATGGAAGAAATAAATGTAGTATGcac
tgaaaaacattttttgtggTTTGTatttgccaccgcaggaagcctaaa

Coding sequence (CDS) from alignment at scaffold_425:244994..246041

>TCONS_00064899 ID=TCONS_00064899|Name=TCONS_00064899|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_425:244994..246041 (Clytia hemisphaerica)
TTATAACCCGCAAGCATAGGCTTTTGCAAATTCATCAAAAAGAACGACTC
CATTACCATCAGTATCTAAACGTTTCATGAATTCAACAAATTCATCATCA
CTCAACGGTTTAGGGAGATTAGCGCATGCGCGTTTCGCTTCTTCCACTGT
GATCGTGTTGTCACCATTTTGATCGAAAATCTTGAACACTTCGTACGCTT
CTTCGTATTGTTTGTTCGCGTTCAAAACGTCCGTGATGAGCGCGCGGAAT
TCATTCAAGTCAATATCTCGACTCCCGTCTGCATCGAATTTATAGACTAG
CGACTTGACATCTTTGACGGAAAGTTTCACACCGATCGATTTGAACATTT
TACCGAGTTCCCTGGTTGAGATTTTTCCGTCTCCACTTTTATCAGCTGCT
TGGAAAAGTTCTTTTATTTGATCGTCATTGGAAGCCATAgttatttgtat
attttttattgtgACTGAAATGGAAGAAATAAATGTAGTATGcactgaaa
aacattttttgtggTTTGTatttgccaccgcaggaagcctaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040704XLOC_040704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064899-exon-scaffold_425-1491911889:244994..246041TCONS_00064899-exon-scaffold_425-1491911889:244994..246041Clytia hemisphaericaexon
TCONS_00064899-exon-scaffold_425-1510915933:244994..246041TCONS_00064899-exon-scaffold_425-1510915933:244994..246041Clytia hemisphaericaexon
TCONS_00064899-exon-scaffold_425-1575043694:244994..246041TCONS_00064899-exon-scaffold_425-1575043694:244994..246041Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064899-proteinTCONS_00064899-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:244994..246041 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.8078	9.76938	3.06872	1.89123	18.0415	14.3103	23.7816	25.4988	42.1603	40.0482	25.0402	30.5513	22.1728	21.3187	27.6207	25.0889	36.1429	40.6263	30.5098	40.0593	29.5933	29.0597	22.4925	22.6694	15.0964	19.1252	30.3535	20.8	17.5518	13.3173
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00064899 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.761e-20
Identity = 45/137 (32.85%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:  124 QIKELFQAADKSGDGKISTRELGKMFKSIGXXXXXXXXXXXXXXFDADGSRDIDLNEFRALITDVLNANKQYEEAYEVFKIFDQNGDNTITVEEAKRACANLPKPLSDDEFVEFMKRLDTDGNGVVLFDEFAKAYAC 534
            + KE F   DK GDG I+T+ELG + +S+G   +  +++ ++ + DADG+  ID  EF  ++   +      EE  E F++FD++G+  I+  E +    NL + L+D+E  E ++  D DG+G V ++EF +    
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00064899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM38.761e-2032.85Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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