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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064896 ID=TCONS_00064896|Name=TCONS_00064896|organism=Clytia hemisphaerica|type=transcript|length=959bp
cagggtaccaaATTACATGTAGCAAGAAAACATCCTGGATTGGTCGATTA
TGTAGACAAAGatgaataaaaggaagaatcAGTGATCCAAGTTACTGGAA
AGTATAAGGATTTCTTGCTTGAcgagaaaaaattttctggcatTATGATT
GGTACCTTAACAAAGATCATATTGGACAAAAATACCCCAGAAATCTTCGC
CAAAGAGCTATCTACATGTGCAGTAGCAGATTTAAAATTGAACATGATTA
TTGAAAGTGATTCAATTAACTTCTTAAGAAAAGGAAATTTAGAACGTTTT
CAGCAGCAATTTTTTCTTGATGTTGTTATACCAAATAATCTGGTTGCACC
AAAACTATCTTGTGGAGCATCTACATATTTGCTAAAAAAACTATGTGACA
TTCTATACACTACTTGCAAGAGGGAATTCGAGCTGCCAGAAACTGTGGAA
GCTGAGATAGAATTATCAAACCGTGAACTTAATGGTTTACATTATATTGC
AGGCTATGTCGTTcgaaaactttacaaaaaataCAGATTTTCTCAGAAAG
GAGCTGTTAAAGACAGGGAGAAAATTGCTACTTTGCTAATTGCTTGTAGA
GGGCAAATGACTGAAAATTCAGCCCTTATCGATGCTTTAACTCGAGGTGG
ATTGTGGTATGTGAAAACAGACATACAAGTGATTTTACAAAATGTCGAAC
TTCATTTTAGACattttcgaaataaaaatagaacTCTCAAGAATGCCATA
AATTGTATTGTGGCAACTATGTTAAACGACGTGGAGATCACAGATTTGTT
TCAAAACATTGTAGTGGATGCAGCAGTTACGgttgaaaatgaatttcaaa
aattgacacttcAGTCAATTATTGAACTATTCCTAAGGGTTCGTGTGCAT
TCCTACGCTAAACAAAAAACTGCTGAATGTGAGCAAAAGGAGGCAGCCAA
GATACAGGC Run BLAST on NCBI protein sequence of TCONS_00064896-protein >TCONS_00064896-protein ID=TCONS_00064896-protein|Name=TCONS_00064896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MIGTLTKIILDKNTPEIFAKELSTCAVADLKLNMIIESDSINFLRKGNLE
RFQQQFFLDVVIPNNLVAPKLSCGASTYLLKKLCDILYTTCKREFELPET
VEAEIELSNRELNGLHYIAGYVVRKLYKKYRFSQKGAVKDREKIATLLIA
CRGQMTENSALIDALTRGGLWYVKTDIQVILQNVELHFRHFRNKNRTLKN
AINCIVATMLNDVEITDLFQNIVVDAAVTVENEFQKLTLQSIIELFLRVR
VHSYAKQKTAECEQKEAAKIQ Run BLAST on NCBI transcript from alignment at scaffold_425:152483..153441 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064896 ID=TCONS_00064896|Name=TCONS_00064896|organism=Clytia hemisphaerica|type=transcript|length=959bp|location=Sequence derived from alignment at scaffold_425:152483..153441 (Clytia hemisphaerica)
GCCTGTATCTTGGCTGCCTCCTTTTGCTCACATTCAGCAGTTTTTTGTTT
AGCGTAGGAATGCACACGAACCCTTAGGAATAGTTCAATAATTGACTgaa
gtgtcaatttttgaaattcattttcaacCGTAACTGCTGCATCCACTACA
ATGTTTTGAAACAAATCTGTGATCTCCACGTCGTTTAACATAGTTGCCAC
AATACAATTTATGGCATTCTTGAGAgttctatttttatttcgaaaatGTC
TAAAATGAAGTTCGACATTTTGTAAAATCACTTGTATGTCTGTTTTCACA
TACCACAATCCACCTCGAGTTAAAGCATCGATAAGGGCTGAATTTTCAGT
CATTTGCCCTCTACAAGCAATTAGCAAAGTAGCAATTTTCTCCCTGTCTT
TAACAGCTCCTTTCTGAGAAAATCTGtattttttgtaaagttttcgAACG
ACATAGCCTGCAATATAATGTAAACCATTAAGTTCACGGTTTGATAATTC
TATCTCAGCTTCCACAGTTTCTGGCAGCTCGAATTCCCTCTTGCAAGTAG
TGTATAGAATGTCACATAGTTTTTTTAGCAAATATGTAGATGCTCCACAA
GATAGTTTTGGTGCAACCAGATTATTTGGTATAACAACATCAAGAAAAAA
TTGCTGCTGAAAACGTTCTAAATTTCCTTTTCTTAAGAAGTTAATTGAAT
CACTTTCAATAATCATGTTCAATTTTAAATCTGCTACTGCACATGTAGAT
AGCTCTTTGGCGAAGATTTCTGGGGTATTTTTGTCCAATATGATCTTTGT
TAAGGTACCAATCATAatgccagaaaattttttctcgTCAAGCAAGAAAT
CCTTATACTTTCCAGTAACTTGGATCACTgattcttccttttattcatCT
TTGTCTACATAATCGACCAATCCAGGATGTTTTCTTGCTACATGTAATtt
ggtaccctg Coding sequence (CDS) from alignment at scaffold_425:152483..153441 >TCONS_00064896 ID=TCONS_00064896|Name=TCONS_00064896|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at scaffold_425:152483..153441 (Clytia hemisphaerica)
CTGTATCTTGGCTGCCTCCTTTTGCTCACATTCAGCAGTTTTTTGTTTAG
CGTAGGAATGCACACGAACCCTTAGGAATAGTTCAATAATTGACTgaagt
gtcaatttttgaaattcattttcaacCGTAACTGCTGCATCCACTACAAT
GTTTTGAAACAAATCTGTGATCTCCACGTCGTTTAACATAGTTGCCACAA
TACAATTTATGGCATTCTTGAGAgttctatttttatttcgaaaatGTCTA
AAATGAAGTTCGACATTTTGTAAAATCACTTGTATGTCTGTTTTCACATA
CCACAATCCACCTCGAGTTAAAGCATCGATAAGGGCTGAATTTTCAGTCA
TTTGCCCTCTACAAGCAATTAGCAAAGTAGCAATTTTCTCCCTGTCTTTA
ACAGCTCCTTTCTGAGAAAATCTGtattttttgtaaagttttcgAACGAC
ATAGCCTGCAATATAATGTAAACCATTAAGTTCACGGTTTGATAATTCTA
TCTCAGCTTCCACAGTTTCTGGCAGCTCGAATTCCCTCTTGCAAGTAGTG
TATAGAATGTCACATAGTTTTTTTAGCAAATATGTAGATGCTCCACAAGA
TAGTTTTGGTGCAACCAGATTATTTGGTATAACAACATCAAGAAAAAATT
GCTGCTGAAAACGTTCTAAATTTCCTTTTCTTAAGAAGTTAATTGAATCA
CTTTCAATAATCATGTTCAATTTTAAATCTGCTACTGCACATGTAGATAG
CTCTTTGGCGAAGATTTCTGGGGTATTTTTGTCCAATATGATCTTTGTTA
AGGTACCAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064896-exon-scaffold_425-1491911889:152483..153441 | TCONS_00064896-exon-scaffold_425-1491911889:152483..153441 | Clytia hemisphaerica | exon |
| TCONS_00064896-exon-scaffold_425-1510915933:152483..153441 | TCONS_00064896-exon-scaffold_425-1510915933:152483..153441 | Clytia hemisphaerica | exon |
| TCONS_00064896-exon-scaffold_425-1575043694:152483..153441 | TCONS_00064896-exon-scaffold_425-1575043694:152483..153441 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:152483..153441 . |
Blast
The following BLAST results are available for this feature:
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