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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064894 ID=TCONS_00064894|Name=TCONS_00064894|organism=Clytia hemisphaerica|type=transcript|length=1379bp
GTTGTtacaaaagtaaaattttggCTTGAATCAAATTATGTAAATTCTCT
gtgaaagaaagaagaaagatatgaAATCCTGAAAAGATGATTTGAAAAAC
CATTACAAGATGTCTAATTAGagtaaaaagttttcaatttattttagaAA
AGTCAACTCAAAACTATCTTTGCAACAAAGCAATAATTTTAATCATCTTT
TTTCCTTCAAGAGAGTATCAAAATGTATGGACTGTCAATTTTTTGACATA
GACTTACATTtgcttgataaaaaattgtggATTTATCTGAGAGTCACTTT
CTTCGTTTCAAAGGCTCATCAGAAACTCCTTCCCAGGAGCGTTTGTTGTC
TTTGCGACCTGCATTATTTCCAGTATGGCAGGAAATGGTTTTTTGAGTTT
GCGCTGTTAACNAGAATATTTCTGCTCGGAAGATTCTGTTGGCACTTTCT
GTATTTCTTGTTGAATTAGGGGTAGCGTGTTCTCAAGTTTTTGAGTTTGT
GCTGTTAATTctgccaaaatattttggtttgttGGATTAACTTCATTGAA
AGTTAAGTCAAACTCTTCCTCTTTAATCTGCTGTTGTGAATTAGCATTCC
ATTGCTTCAGTAAAACAGCATCCGATGTATGTGGTGGCTCGATATTTTCA
CCAAGCTGTTGTAGATAGTTCTGATTTTGTTGTGGTAAAACAGCTAAACC
TGTACTTGGCTGTGTTTGTTGTACATCACCATCAAGAATCATTTGAAGTT
CTTTATCAAATGCTACATCTCCAGTGATTTCAACAGGTTTGCTTTGCTTT
TGGGAGGCTTCTTCAAGAACTTCAAGTGTGCCTTGCAAATATTTANTTAA
CTTCATTGAAAGTTAAGTCAAACTCTTCCTCTTTAATCTGCTGTTGTGAA
TTAGCATTCCATTGCTTCAGTAAAACAGCATCCGATGTATGTGGTGGCTC
GATATTTTCACCAAGCTGTTGTAGATAGTTCTGATTTTGTTGTGGTAAAA
CAGCTAAACCTGTACTTGGCTGTGTTTGTTGTACATCACCATCAAGAATC
ATTTGAAGTTCTTTATCAAATGCTACATCTCCAGTGATTTCAACAGGTTT
GCTTTGGTTTTGGGAGGCTTCTTCAAGAACTTCAAGTGTGCcttgcaaaa
attttccaccaagCCCCCAACTGGCAATATCTGGTAAATCTCCACCAAAA
ATTGAAGGAGGAAAATTCAAGGATGGTGTAGGATCAACATCCATAAACAT
TGAACgtaaaaatgacattttgaaaTTACTACAAGTATATGAATATAATT
GATAATGTATCTCTTTTTATCCTGCTTTTTCTCAactcaaaaacttcaaa
ctgcCGAATTTTTTGCTGAAGcttgtgtt Run BLAST on NCBI protein sequence of TCONS_00064894-protein >TCONS_00064894-protein ID=TCONS_00064894-protein|Name=TCONS_00064894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MKLXKYLQGTLEVLEEASQKQSKPVEITGDVAFDKELQMILDGDVQQTQP
STGLAVLPQQNQNYLQQLGENIEPPHTSDAVLLKQWNANSQQQIKEEEFD
LTFNEVNPTNQNILAELTAQTQKLENTLPLIQQEIQKVPTESSEQKYSX Run BLAST on NCBI transcript from alignment at scaffold_425:139945..141323 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064894 ID=TCONS_00064894|Name=TCONS_00064894|organism=Clytia hemisphaerica|type=transcript|length=1379bp|location=Sequence derived from alignment at scaffold_425:139945..141323 (Clytia hemisphaerica)
aacacaagCTTCAGCAAAAAATTCGgcagtttgaagtttttgagtTGAGA
AAAAGCAGGATAAAAAGAGATACATTATCAATTATATTCATATACTTGTA
GTAAtttcaaaatgtcatttttacGTTCAATGTTTATGGATGTTGATCCT
ACACCATCCTTGAATTTTCCTCCTTCAATTTTTGGTGGAGATTTACCAGA
TATTGCCAGTTGGGGGcttggtggaaaatttttgcaagGCACACTTGAAG
TTCTTGAAGAAGCCTCCCAAAACCAAAGCAAACCTGTTGAAATCACTGGA
GATGTAGCATTTGATAAAGAACTTCAAATGATTCTTGATGGTGATGTACA
ACAAACACAGCCAAGTACAGGTTTAGCTGTTTTACCACAACAAAATCAGA
ACTATCTACAACAGCTTGGTGAAAATATCGAGCCACCACATACATCGGAT
GCTGTTTTACTGAAGCAATGGAATGCTAATTCACAACAGCAGATTAAAGA
GGAAGAGTTTGACTTAACTTTCAATGAAGTTAANTAAATATTTGCAAGGC
ACACTTGAAGTTCTTGAAGAAGCCTCCCAAAAGCAAAGCAAACCTGTTGA
AATCACTGGAGATGTAGCATTTGATAAAGAACTTCAAATGATTCTTGATG
GTGATGTACAACAAACACAGCCAAGTACAGGTTTAGCTGTTTTACCACAA
CAAAATCAGAACTATCTACAACAGCTTGGTGAAAATATCGAGCCACCACA
TACATCGGATGCTGTTTTACTGAAGCAATGGAATGCTAATTCACAACAGC
AGATTAAAGAGGAAGAGTTTGACTTAACTTTCAATGAAGTTAATCCaaca
aaccaaaatattttggcagAATTAACAGCACAAACTCAAAAACTTGAGAA
CACGCTACCCCTAATTCAACAAGAAATACAGAAAGTGCCAACAGAATCTT
CCGAGCAGAAATATTCTNGTTAACAGCGCAAACTCAAAAAACCATTTCCT
GCCATACTGGAAATAATGCAGGTCGCAAAGACAACAAACGCTCCTGGGAA
GGAGTTTCTGATGAGCCTTTGAAACGAAGAAAGTGACTCTCAGATAAATc
cacaattttttatcaagcaAATGTAAGTCTATGTCAAAAAATTGACAGTC
CATACATTTTGATACTCTCTTGAAGGAAAAAAGATGATTAAAATTATTGC
TTTGTTGCAAAGATAGTTTTGAGTTGACTTTtctaaaataaattgaaaac
tttttactCTAATTAGACATCTTGTAATGGTTTTTCAAATCATCTTTTCA
GGATTtcatatctttcttctttctttcacAGAGAATTTACATAATTTGAT
TCAAGccaaaattttacttttgtaACAAC Coding sequence (CDS) from alignment at scaffold_425:139945..141323 >TCONS_00064894 ID=TCONS_00064894|Name=TCONS_00064894|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_425:139945..141323 (Clytia hemisphaerica)
ATGAAGTTAANTAAATATTTGCAAGGCACACTTGAAGTTCTTGAAGAAGC
CTCCCAAAAGCAAAGCAAACCTGTTGAAATCACTGGAGATGTAGCATTTG
ATAAAGAACTTCAAATGATTCTTGATGGTGATGTACAACAAACACAGCCA
AGTACAGGTTTAGCTGTTTTACCACAACAAAATCAGAACTATCTACAACA
GCTTGGTGAAAATATCGAGCCACCACATACATCGGATGCTGTTTTACTGA
AGCAATGGAATGCTAATTCACAACAGCAGATTAAAGAGGAAGAGTTTGAC
TTAACTTTCAATGAAGTTAATCCaacaaaccaaaatattttggcagAATT
AACAGCACAAACTCAAAAACTTGAGAACACGCTACCCCTAATTCAACAAG
AAATACAGAAAGTGCCAACAGAATCTTCCGAGCAGAAATATTCTNGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064894-exon-scaffold_425-1491911889:139945..141323 | TCONS_00064894-exon-scaffold_425-1491911889:139945..141323 | Clytia hemisphaerica | exon |
| TCONS_00064894-exon-scaffold_425-1510915933:139945..141323 | TCONS_00064894-exon-scaffold_425-1510915933:139945..141323 | Clytia hemisphaerica | exon |
| TCONS_00064894-exon-scaffold_425-1575043694:139945..141323 | TCONS_00064894-exon-scaffold_425-1575043694:139945..141323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:139945..141323 . |
Blast
The following BLAST results are available for this feature:
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