TCONS_00064868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064868
Unique NameTCONS_00064868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064868 ID=TCONS_00064868|Name=TCONS_00064868|organism=Clytia hemisphaerica|type=transcript|length=334bp
NNTTTTACACGATGGAAGAAGAAGGACTCCTGATGTCCATCAACATGAAG
AGTAAATATGATTACGAAGCCATCTATCTCTCTGGTGGGAAAGTTCATTA
CATTTTCAATGCTGGTTCTGGCTCATTGACATTGTCGTCCAAAACAAAAG
TCAATGATGGAAAATGGCATAAGCTGGTTGCTAGGAGGAACAGAAGAAAC
GGTATTTTATCTTTTGATGACGTCTTGATGATGGCGGGCGAATCTCCGCC
CTCATCGGCCGCCGTGAATAACATCAAAACGTTGTATTTTGGTGGTGTTC
CTGAAAATGCTATGGTACCTGCTAAAATACCGGT
Run BLAST on NCBI

protein sequence of TCONS_00064868-protein

>TCONS_00064868-protein ID=TCONS_00064868-protein|Name=TCONS_00064868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
FYTMEEEGLLMSINMKSKYDYEAIYLSGGKVHYIFNAGSGSLTLSSKTKV
NDGKWHKLVARRNRRNGILSFDDVLMMAGESPPSSAAVNNIKTLYFGGVP
ENAMVPAKIP
Run BLAST on NCBI

transcript from alignment at scaffold_425:327..832-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064868 ID=TCONS_00064868|Name=TCONS_00064868|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at scaffold_425:327..832- (Clytia hemisphaerica)
NNTTTTACACGATGGAAGAAGAAGGACTCCTGATGTCCATCAACATGAAG
AGTAAATATGATTACGAAGCCATCTATCTCTCTGGTGGGAAAGTTCATTA
CATTTTCAATGCTGGTTCTGGCTCATTGACATTGTCGTCCAAAACAAAAG
TCAATGATGGAAAATGGCATAAGCTGGTTGCTAGGAGGAACAGAAGAAAC
GGTATTTCAATTTAACTTGCGGGTTGTTGAAACTGTGAGAAGAGAGCTGC
ATTTTACTTACAGAAGTCATGATCAAGATATTCCTTATTGTGGAATCAAT
TGGGTTATTCTAAAAAGGCGCGCTATGCTCTACAGTAGATCCTGGACAAT
ATTCACTTTTTTGTTCCCCTTAGGTATTTTATCTTTTGATGACGTCTTGA
TGATGGCGGGCGAATCTCCGCCCTCATCGGCCGCCGTGAATAACATCAAA
ACGTTGTATTTTGGTGGTGTTCCTGAAAATGCTATGGTACCTGCTAAAAT
ACCGGT

Coding sequence (CDS) from alignment at scaffold_425:327..832-

>TCONS_00064868 ID=TCONS_00064868|Name=TCONS_00064868|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_425:327..832- (Clytia hemisphaerica)
GTATTTTATCTTTTGATGACGTCTTGATGATGGCGGGCGAATCTCCGCCC
TCATCGGCCGCCGTGAATAACATCAAAACGTTGTATTTTGGTGGTGTTCC
TGAAAATGCTATGGTACCTGCTAAAATACCGTTTTACACGATGGAAGAAG
AAGGACTCCTGATGTCCATCAACATGAAGAGTAAATATGATTACGAAGCC
ATCTATCTCTCTGGTGGGAAAGTTCATTACATTTTCAATGCTGGTTCTGG
CTCATTGACATTGTCGTCCAAAACAAAAGTCAATGATGGAAAATGGCATA
AGCTGGTTGCTAGGAGGAACAGAAGAAACGGTATTTTATCTTTTGATGAC
GTCTTGATGATGGCGGGCGAATCTCCGCCCTCATCGGCCGCCGTGAATAA
CATCAAAACGTTGTATTTTGGTGGTGTTCCTGAAAATGCTATGGTACCTG
CTAAAATACCGTTTTACACGATGGAAGAAGAAGGACTCCTGATGTCCATC
AACATGAAGAGTAAATATGATTACGAAGCCATCTATCTCTCTGGTGGGAA
AGTTCATTACATTTTCAATGCTGGTTCTGGCTCATTGACATTGTCGTCCA
AAACAAAAGTCAATGATGGAAAATGGCATAAGCTGGTTGCTAGGAGGAAC
AGAAGAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040685XLOC_040685Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064868-proteinTCONS_00064868-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064868-exon-scaffold_425-1575043694:632..832TCONS_00064868-exon-scaffold_425-1575043694:632..832Clytia hemisphaericaexon
TCONS_00064868-exon-scaffold_425-1575043694:327..459TCONS_00064868-exon-scaffold_425-1575043694:327..459Clytia hemisphaericaexon
TCONS_00064868-exon-scaffold_425-1510915933:632..832TCONS_00064868-exon-scaffold_425-1510915933:632..832Clytia hemisphaericaexon
TCONS_00064868-exon-scaffold_425-1510915933:327..459TCONS_00064868-exon-scaffold_425-1510915933:327..459Clytia hemisphaericaexon
TCONS_00064868-exon-scaffold_425-1491911889:632..832TCONS_00064868-exon-scaffold_425-1491911889:632..832Clytia hemisphaericaexon
TCONS_00064868-exon-scaffold_425-1491911889:327..459TCONS_00064868-exon-scaffold_425-1491911889:327..459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:327..832 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.83817	1.93736	0.321352	0.943179	1.14823	1.20979	2.91913	3.75768	1.19584	5.62869	1.72527	2.64629	12.8355	9.60531	2.57857	3.97785	7.03099	7.86168	9.95622	13.5756	6.58585	4.81852	1.95251	2.36682	3.65666	7.34284	2.72419	3.73799	4.09519	3.53045
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001791Laminin_G
IPR013320ConA-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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