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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064866 ID=TCONS_00064866|Name=TCONS_00064866|organism=Clytia hemisphaerica|type=transcript|length=786bp
CAAAGATGCTGAAGCGACACTTAATGAGGAGAAGGAAGGTTCATATGTGG
TGCACCAAAGTGTAAGCATGCCTGGTGATCTCACTCTCTCGATAAAGCGT
CAGGAACATGTTGGTCACATCTGGATTGGAAAAGCAGAAGGCAAATTCAT
ATACAGTACACCCCGACGATTCAAAAATATTGAACAGCTCATTGAAAGTC
ACCAAAAAAAGAATCTAATGACAAAAGGAGGAAAAACTGTTCGACTGTCC
GTCAAAGATGAAGATATGGCGAGCGAGGAAGTCAAGCGTGAGTATGATTC
GTTCAAGAAGAAATCGTATTACGCGGGAAAGCTATCGCGACAAGATAGTG
TCAAAAGACTGATTAAGGGGGTAGTCagatgagattttgaaaattggtga
aaaatttatcaatttcgggatttaaggctttttagtatcctttatccttc
ctgaacataccctgaaaatttcaaggccgtagcATAAATATCTGCCGATA
TATAGGGTTTCTTATGAGCCCTGGTATACAATTTTCTCCTTAGCAACGGT
AAATCGCATCCGTTGCTAGGGCCTCATTTCCGTATGGCTGCTCTAAACAT
AGCATCATAACATACCaaatgaaagctctttttacaCCCTTTTTGGGCGT
CTAAGTCAATACCGCCTTATTTCCCCGGGATTTCTAAATATGacgtaatt
aaagatggtaaccgaagaagtggtattttcaaaaacattcacaTTTTGGA
GGCAGTCAGCTGTGTTTTTGACATGGAAACTGAGCN Run BLAST on NCBI protein sequence of TCONS_00064866-protein >TCONS_00064866-protein ID=TCONS_00064866-protein|Name=TCONS_00064866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
KDAEATLNEEKEGSYVVHQSVSMPGDLTLSIKRQEHVGHIWIGKAEGKFI
YSTPRRFKNIEQLIESHQKKNLMTKGGKTVRLSVKDEDMASEEVKREYDS
FKKKSYYAGKLSRQDSVKRLIKGVVR Run BLAST on NCBI transcript from alignment at scaffold_425:426386..427724+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064866 ID=TCONS_00064866|Name=TCONS_00064866|organism=Clytia hemisphaerica|type=transcript|length=1339bp|location=Sequence derived from alignment at scaffold_425:426386..427724+ (Clytia hemisphaerica)
CAAAGATGCTGAAGCGACACTTAATGAGGAGAAGGAAGGTTCATATGTGG
TGCACCAAAGTGTAAGCATGGTAAGGTTTTACACCTGTTATAATGCtcca
aattatcttttcaacggtatatatTTTGTTAGCATTGGTTCAAAAATagc
aagcaaaacaaagattagaATTTAGTGAATGATAGTACAATAACTAAGTG
TTTGAGCATTCTACACTACTAAGTTATCTGGAAAATttagtgttttttca
aaaaaacaatgtCAGCTGTTTAAAAACAAAGCAAAGAAAACAGAAGTCCA
ACCTTACCTGAGCCCTCGGAGGAGGGGTACAAAGTTTGCGAGATGACgag
tatgtccgagccaaagttcaaaaatcgacccttagactTAGAGGgactga
attttgaaaattttgtccatcttttgacgtttttgccacccttagGTTTC
CCAAaaactccagtcaaaatttccaagaatttttgaCTCTTTGAGGGACC
CTTATGgttcgcacatacccagcaaccattttgcctaagtacagCTGGAA
AGTTTCTTACACATATTCCCAAAGAGTTCTAAATTAATTTAAAACACTTT
GTCATGGTGCAATCTTTTTATAGCCTGGTGATCTCACTCTCTCGATAAAG
CGTCAGGAACATGTTGGTCACATCTGGATTGGAAAAGCAGAAGGCAAATT
CATATACAGTACACCCCGACGATTCAAAAATATTGAACAGCTCATTGAAA
GTCACCAAAAAAAGAATCTAATGACAAAAGGAGGAAAAACTGTTCGACTG
TCCGTCAAAGATGAAGATATGGCGAGCGAGGAAGTCAAGCGTGAGTATGA
TTCGTTCAAGAAGAAATCGTATTACGCGGGAAAGCTATCGCGACAAGATA
GTGTCAAAAGACTGATTAAGGGGGTAGTCagatgagattttgaaaattgg
tgaaaaatttatcaatttcgggatttaaggctttttagtatcctttatcc
ttcctgaacataccctgaaaatttcaaggccgtagcATAAATATCTGCCG
ATATATAGGGTTTCTTATGAGCCCTGGTATACAATTTTCTCCTTAGCAAC
GGTAAATCGCATCCGTTGCTAGGGCCTCATTTCCGTATGGCTGCTCTAAA
CATAGCATCATAACATACCaaatgaaagctctttttacaCCCTTTTTGGG
CGTCTAAGTCAATACCGCCTTATTTCCCCGGGATTTCTAAATATGacgta
attaaagatggtaaccgaagaagtggtattttcaaaaacattcacaTTTT
GGAGGCAGTCAGCTGTGTTTTTGACATGGAAACTGAGCN Coding sequence (CDS) from alignment at scaffold_425:426386..427724+ >TCONS_00064866 ID=TCONS_00064866|Name=TCONS_00064866|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_425:426386..427724+ (Clytia hemisphaerica)
AAAGATGCTGAAGCGACACTTAATGAGGAGAAGGAAGGTTCATATGTGGT
GCACCAAAGTGTAAGCATGCCTGGTGATCTCACTCTCTCGATAAAGCGTC
AGGAACATGTTGGTCACATCTGGATTGGAAAAGCAGAAGGCAAATTCATA
TACAGTACACCCCGACGATTCAAAAATATTGAACAGCTCATTGAAAGTCA
CCAAAAAAAGAATCTAATGACAAAAGGAGGAAAAACTGTTCGACTGTCCG
TCAAAGATGAAGATATGGCGAGCGAGGAAGTCAAGCGTGAGTATGATTCG
TTCAAGAAGAAATCGTATTACGCGGGAAAGCTATCGCGACAAGATAGTGT
CAAAAGACTGATTAAGGGGGTAGTCagatgaAAAGATGCTGAAGCGACAC
TTAATGAGGAGAAGGAAGGTTCATATGTGGTGCACCAAAGTGTAAGCATG
CCTGGTGATCTCACTCTCTCGATAAAGCGTCAGGAACATGTTGGTCACAT
CTGGATTGGAAAAGCAGAAGGCAAATTCATATACAGTACACCCCGACGAT
TCAAAAATATTGAACAGCTCATTGAAAGTCACCAAAAAAAGAATCTAATG
ACAAAAGGAGGAAAAACTGTTCGACTGTCCGTCAAAGATGAAGATATGGC
GAGCGAGGAAGTCAAGCGTGAGTATGATTCGTTCAAGAAGAAATCGTATT
ACGCGGGAAAGCTATCGCGACAAGATAGTGTCAAAAGACTGATTAAGGGG
GTAGTCagatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064866-exon-scaffold_425-1491911889:426386..426455 | TCONS_00064866-exon-scaffold_425-1491911889:426386..426455 | Clytia hemisphaerica | exon |
| TCONS_00064866-exon-scaffold_425-1510915933:426386..426455 | TCONS_00064866-exon-scaffold_425-1510915933:426386..426455 | Clytia hemisphaerica | exon |
| TCONS_00064866-exon-scaffold_425-1575043694:426386..426455 | TCONS_00064866-exon-scaffold_425-1575043694:426386..426455 | Clytia hemisphaerica | exon |
| TCONS_00064866-exon-scaffold_425-1491911889:427009..427724 | TCONS_00064866-exon-scaffold_425-1491911889:427009..427724 | Clytia hemisphaerica | exon |
| TCONS_00064866-exon-scaffold_425-1510915933:427009..427724 | TCONS_00064866-exon-scaffold_425-1510915933:427009..427724 | Clytia hemisphaerica | exon |
| TCONS_00064866-exon-scaffold_425-1575043694:427009..427724 | TCONS_00064866-exon-scaffold_425-1575043694:427009..427724 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:426386..427724 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000980 | SH2 |
Blast
The following BLAST results are available for this feature:
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