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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064857 ID=TCONS_00064857|Name=TCONS_00064857|organism=Clytia hemisphaerica|type=transcript|length=1656bp
tttaagagtAATGAAAACTAAAACACAATGAGTTGTGGAATTCTCTCGTC
ATCTCCTTATGACTATCGAATTGGAGAGTGAACTTTCACAACCTTGGCTA
GAATGCTAAAAAGATGACAAAGAGAAACAAAAGCGAAACTTCTTGGCTAT
GCTTGCAAGCTGAAAGTCCACAAGGTTAGTACTATTGAGTTATAACAGCG
ATACAATGGAGAGCCATTCTCACTCGTTACAGGGTATTCTATTATCTTAA
AAATTTCCGTTTTCTATTCTTTGTTTTGTAAAGAATCCTCATATGTAATC
AGCATCTAATTACTACATGTATAATAGCATTAATTATATAAATGGTGTAA
GTCGTTATCAGTTAGTGTCGAGTATTTCATAAAGCAGAAGTAAAAACTGA
TAGCGTACATAGTTGATTATTTCGTTCTGAAAAAGGCTTCACACAGCAAC
ATTCCACATAGTTATTTTGTTTGTATCCAAAATGTTGGAGAACAATAATT
TATTGATGGTGCCAGATGCTTTTCACAACAACAGGCACATAAAGTCAACG
AAAACACAAGAAGGTTTGCCTCGTTTCCCGAAACTGAAGAAGAATCGAAN
GACTTTCCTGTCTCGggtgtttattaaattttttcttttttaggagGTGC
GTTTACTTAAGGGGGTGTTTAAAAGatgggggcgtttattcgaagaactt
ggaaaaacctttttttttcattttaagagtAATAAAAACTAAAACACAAT
GAGTTGTGGAATTCTCTCGTCATCTCCTTATGACTATCGAATTGGAGAGT
GAACTTTCACAACCTTGGCTAGAATGCTAAAAAGATGACAAAGAGAAACA
AAAGCGAAACTTCTTGGCTATGCTTGCAAGCTGAAAGTCCACAAGGTTAG
TACTATTGAGTTATAACAGCGATACAATGGAGAGCCATTCTCACTCGTTA
CAGGGTANATGTCACTGGTATCTGAATGGTACACTGGTTGACCACGAATC
AAGTAATGGTCGGATTTACTCAAAAGATGGTGGTAAAACATTAGTCATTT
TATCACTTCGTGAACAGGACCACGGAAAGTTAGTCATGGTCGCACGAAAT
CCTTTCGGAAAAACGAAAACAAGCTGCAGGTTGAACATAGTGGATAATAT
TGGAGAAAACAAGGACAAATCTGAAAAACTGAAGAAggagagcaaagtag
acaaatTGGATCCCATTCCTGAAAGCAAAGTGGATATTGAATTAACGCAT
TTTTCACTTCATAACGAACAAAGAAGACATTCTAAAACGAAGAACATTCA
ATTATCGAGGAGCTATTAGTATGCAATCAACCTCTTATTATAAACAAGGA
TCTCCTTTGAGAGCTCTATAGCCCGCCTTCTGTGTTATACACAATAATTA
GAGCTATTTAAAACTTTCATAATTCAAATGAGCCTAATGTTCATTACACA
CATtattcaaaagaagaaaatacgATTAACGACGGGTATAAAGCTAACAT
TTCAgtatttttaaattattctGTAACTTGTAAattattttattgtaaat
tttgtggtttttattttttgtaaattcacCTTTCACAATATTTGAGTTTT
ATCAACAAACATTTATAAAGCGTCCATTTTTATAAACCCTATTTGGTAAT
CCGCAA Run BLAST on NCBI transcript from alignment at scaffold_425:353605..355678+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064857 ID=TCONS_00064857|Name=TCONS_00064857|organism=Clytia hemisphaerica|type=transcript|length=2074bp|location=Sequence derived from alignment at scaffold_425:353605..355678+ (Clytia hemisphaerica)
tttaagagtAATGAAAACTAAAACACAATGAGTTGTGGAATTCTCTCGTC
ATCTCCTTATGACTATCGAATTGGAGAGTGAACTTTCACAACCTTGGCTA
GAATGCTAAAAAGATGACAAAGAGAAACAAAAGCGAAACTTCTTGGCTAT
GCTTGCAAGCTGAAAGTCCACAAGGTTAGTACTATTGAGTTATAACAGCG
ATACAATGGAGAGCCATTCTCACTCGTTACAGGGTATTCTATTATCTTAA
AAATTTCCGTTTTCTATTCTTTGTTTTGTAAAGAATCCTCATATGTAATC
AGCATCTAATTACTACATGTATAATAGCATTAATTATATAAATGGTGTAA
GTCGTTATCAGTTAGTGTCGAGTATTTCATAAAGCAGAAGTAAAAACTGA
TAGCGTACATAGTTGATTATTTCGTTCTGAAAAAGGCTTCACACAGCAAC
ATTCCACATAGTTATTTTGTTTGTATCCAAAATGTTGGAGAACAATAATT
TATTGATGGTGCCAGATGCTTTTCACAACAACAGGCACATAAAGTCAACG
AAAACACAAGAAGGTAAAAAGATTAAGATTTTCAGCCGCAAATTTCACTA
CATTTTCATAcctattttgagattttggccCCTGCGTGAGCGTCATACGT
TTTATTCATTCTCAGAGtcttaaaatcttttgaagTTAACCTTTTTTGAT
CAAGTCTGTTCCACTAGGAAACaggaaaagatttttaaagtttcCCTCTC
CAATAATACTCTTGAGTTTTAATACTGTAGTTTGTTGTTCTATAATATAC
CATTTTTCCAGTATGCCATCTCCCATTCTACCAAAGGTGACATAAAAGAT
TTGGGTATTTTCGAACCTATTGTGAAAGGTGTAAAATTGGTACAAAATTC
AAAAGAAGGGGGTATCATCCATGTCAGTTTGGTATAAAAATCGCAGTTGT
TGCTCAATAACTAATCATCTCAATTTTTTAGGTTTGCCTCGTTTCCCGAA
ACTGAAGAAGAATCGAANGACTTTCCTGTCTCGggtgtttattaaatttt
ttcttttttaggagGTGCGTTTACTTAAGGGGGTGTTTAAAAGatggggg
cgtttattcgaagaacttggaaaaacctttttttttcattttaagagtAA
TAAAAACTAAAACACAATGAGTTGTGGAATTCTCTCGTCATCTCCTTATG
ACTATCGAATTGGAGAGTGAACTTTCACAACCTTGGCTAGAATGCTAAAA
AGATGACAAAGAGAAACAAAAGCGAAACTTCTTGGCTATGCTTGCAAGCT
GAAAGTCCACAAGGTTAGTACTATTGAGTTATAACAGCGATACAATGGAG
AGCCATTCTCACTCGTTACAGGGTANATGTCACTGGTATCTGAATGGTAC
ACTGGTTGACCACGAATCAAGTAATGGTCGGATTTACTCAAAAGATGGTG
GTAAAACATTAGTCATTTTATCACTTCGTGAACAGGACCACGGAAAGTTA
GTCATGGTCGCACGAAATCCTTTCGGAAAAACGAAAACAAGCTGCAGGTT
GAACATAGTGGATAATATTGGAGAAAACAAGGACAAATCTGAAAAACTGA
AGAAggagagcaaagtagacaaatTGGATCCCATTCCTGAAAGCAAAGTG
GATATTGAATTAACGCATTTTTCACTTCATAACGAACAAAGAAGACATTC
TAAAACGAAGAACATTCAATTATCGAGGAGCTATTAGTATGCAATCAACC
TCTTATTATAAACAAGGATCTCCTTTGAGAGCTCTATAGCCCGCCTTCTG
TGTTATACACAATAATTAGAGCTATTTAAAACTTTCATAATTCAAATGAG
CCTAATGTTCATTACACACATtattcaaaagaagaaaatacgATTAACGA
CGGGTATAAAGCTAACATTTCAgtatttttaaattattctGTAACTTGTA
AattattttattgtaaattttgtggtttttattttttgtaaattcacCTT
TCACAATATTTGAGTTTTATCAACAAACATTTATAAAGCGTCCATTTTTA
TAAACCCTATTTGGTAATCCGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064857-exon-scaffold_425-1491911889:353605..354167 | TCONS_00064857-exon-scaffold_425-1491911889:353605..354167 | Clytia hemisphaerica | exon |
| TCONS_00064857-exon-scaffold_425-1510915933:353605..354167 | TCONS_00064857-exon-scaffold_425-1510915933:353605..354167 | Clytia hemisphaerica | exon |
| TCONS_00064857-exon-scaffold_425-1575043694:353605..354167 | TCONS_00064857-exon-scaffold_425-1575043694:353605..354167 | Clytia hemisphaerica | exon |
| TCONS_00064857-exon-scaffold_425-1491911889:354586..355678 | TCONS_00064857-exon-scaffold_425-1491911889:354586..355678 | Clytia hemisphaerica | exon |
| TCONS_00064857-exon-scaffold_425-1510915933:354586..355678 | TCONS_00064857-exon-scaffold_425-1510915933:354586..355678 | Clytia hemisphaerica | exon |
| TCONS_00064857-exon-scaffold_425-1575043694:354586..355678 | TCONS_00064857-exon-scaffold_425-1575043694:354586..355678 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:353605..355678 + |
Blast
The following BLAST results are available for this feature:
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