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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064856 ID=TCONS_00064856|Name=TCONS_00064856|organism=Clytia hemisphaerica|type=transcript|length=1307bp
ggcgtttattcgaagaacttggaaaaaccttttttttcattttaagagtA
ATGAAAACTAAAACACAATGAGTTGTGGAATTCTCTCGTCATCTCCTTAT
GACTATCGAATTGGAGAGTGAACTTTCACAACCTTGGCTAGAATGCTAAA
AAGATGACAAAGAGAAACAAAAGCGAAACTTCTTGGCTATGCTTGCAAGC
TGAAAGTCCACAAGGTTTGCCTCGTTTCCCGAAACTGAAGAAGAATCGAA
NGACTTTCCTGTCTCGggtgtttattaaattttttcttttttaggagGTG
CGTTTACTTAAGGGGGTGTTTAAAAGatgggggcgtttattcgaagaact
tggaaaaacctttttttttcattttaagagtAATAAAAACTAAAACACAA
TGAGTTGTGGAATTCTCTCGTCATCTCCTTATGACTATCGAATTGGAGAG
TGAACTTTCACAACCTTGGCTAGAATGCTAAAAAGATGACAAAGAGAAAC
AAAAGCGAAACTTCTTGGCTATGCTTGCAAGCTGAAAGTCCACAAGGTTA
GTACTATTGAGTTATAACAGCGATACAATGGAGAGCCATTCTCACTCGTT
ACAGGGTANATGTCACTGGTATCTGAATGGTACACTGGTTGACCACGAAT
CAAGTAATGGTCGGATTTACTCAAAAGATGGTGGTAAAACATTAGTCATT
TTATCACTTCGTGAACAGGACCACGGAAAGTTAGTCATGGTCGCACGAAA
TCCTTTCGGAAAAACGAAAACAAGCTGCAGGTTGAACATAGTGGATAATA
TTGGAGAAAACAAGGACAAATCTGAAAAACTGAAGAAggagagcaaagta
gacaaatTGGATCCCATTCCTGAAAGCAAAGTGGATATTGAATTAACGCA
TTTTTCACTTCATAACGAACAAAGAAGACATTCTAAAACGAAGAACATTC
AATTATCGAGGAGCTATTAGTATGCAATCAACCTCTTATTATAAACAAGG
ATCTCCTTTGAGAGCTCTATAGCCCGCCTTCTGTGTTATACACAATAATT
AGAGCTATTTAAAACTTTCATAATTCAAATGAGCCTAATGTTCATTACAC
ACATtattcaaaagaagaaaatacgATTAACGACGGGTATAAAGCTAACA
TTTCAgtatttttaaattattctGTAACTTGTAAattattttattgtaaa
ttttgtggtttttattttttgtaaattcacCTTTCACAATATTTGAGTTT
TATCAACAAACATTTATAAAGCGTCCATTTTTATAAACCCTATTTGGTAA
TCCGCAA Run BLAST on NCBI transcript from alignment at scaffold_425:353565..355678+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064856 ID=TCONS_00064856|Name=TCONS_00064856|organism=Clytia hemisphaerica|type=transcript|length=2114bp|location=Sequence derived from alignment at scaffold_425:353565..355678+ (Clytia hemisphaerica)
ggcgtttattcgaagaacttggaaaaaccttttttttcattttaagagtA
ATGAAAACTAAAACACAATGAGTTGTGGAATTCTCTCGTCATCTCCTTAT
GACTATCGAATTGGAGAGTGAACTTTCACAACCTTGGCTAGAATGCTAAA
AAGATGACAAAGAGAAACAAAAGCGAAACTTCTTGGCTATGCTTGCAAGC
TGAAAGTCCACAAGGTTAGTACTATTGAGTTATAACAGCGATACAATGGA
GAGCCATTCTCACTCGTTACAGGGTATTCTATTATCTTAAAAATTTCCGT
TTTCTATTCTTTGTTTTGTAAAGAATCCTCATATGTAATCAGCATCTAAT
TACTACATGTATAATAGCATTAATTATATAAATGGTGTAAGTCGTTATCA
GTTAGTGTCGAGTATTTCATAAAGCAGAAGTAAAAACTGATAGCGTACAT
AGTTGATTATTTCGTTCTGAAAAAGGCTTCACACAGCAACATTCCACATA
GTTATTTTGTTTGTATCCAAAATGTTGGAGAACAATAATTTATTGATGGT
GCCAGATGCTTTTCACAACAACAGGCACATAAAGTCAACGAAAACACAAG
AAGGTAAAAAGATTAAGATTTTCAGCCGCAAATTTCACTACATTTTCATA
cctattttgagattttggccCCTGCGTGAGCGTCATACGTTTTATTCATT
CTCAGAGtcttaaaatcttttgaagTTAACCTTTTTTGATCAAGTCTGTT
CCACTAGGAAACaggaaaagatttttaaagtttcCCTCTCCAATAATACT
CTTGAGTTTTAATACTGTAGTTTGTTGTTCTATAATATACCATTTTTCCA
GTATGCCATCTCCCATTCTACCAAAGGTGACATAAAAGATTTGGGTATTT
TCGAACCTATTGTGAAAGGTGTAAAATTGGTACAAAATTCAAAAGAAGGG
GGTATCATCCATGTCAGTTTGGTATAAAAATCGCAGTTGTTGCTCAATAA
CTAATCATCTCAATTTTTTAGGTTTGCCTCGTTTCCCGAAACTGAAGAAG
AATCGAANGACTTTCCTGTCTCGggtgtttattaaattttttctttttta
ggagGTGCGTTTACTTAAGGGGGTGTTTAAAAGatgggggcgtttattcg
aagaacttggaaaaacctttttttttcattttaagagtAATAAAAACTAA
AACACAATGAGTTGTGGAATTCTCTCGTCATCTCCTTATGACTATCGAAT
TGGAGAGTGAACTTTCACAACCTTGGCTAGAATGCTAAAAAGATGACAAA
GAGAAACAAAAGCGAAACTTCTTGGCTATGCTTGCAAGCTGAAAGTCCAC
AAGGTTAGTACTATTGAGTTATAACAGCGATACAATGGAGAGCCATTCTC
ACTCGTTACAGGGTANATGTCACTGGTATCTGAATGGTACACTGGTTGAC
CACGAATCAAGTAATGGTCGGATTTACTCAAAAGATGGTGGTAAAACATT
AGTCATTTTATCACTTCGTGAACAGGACCACGGAAAGTTAGTCATGGTCG
CACGAAATCCTTTCGGAAAAACGAAAACAAGCTGCAGGTTGAACATAGTG
GATAATATTGGAGAAAACAAGGACAAATCTGAAAAACTGAAGAAggagag
caaagtagacaaatTGGATCCCATTCCTGAAAGCAAAGTGGATATTGAAT
TAACGCATTTTTCACTTCATAACGAACAAAGAAGACATTCTAAAACGAAG
AACATTCAATTATCGAGGAGCTATTAGTATGCAATCAACCTCTTATTATA
AACAAGGATCTCCTTTGAGAGCTCTATAGCCCGCCTTCTGTGTTATACAC
AATAATTAGAGCTATTTAAAACTTTCATAATTCAAATGAGCCTAATGTTC
ATTACACACATtattcaaaagaagaaaatacgATTAACGACGGGTATAAA
GCTAACATTTCAgtatttttaaattattctGTAACTTGTAAattatttta
ttgtaaattttgtggtttttattttttgtaaattcacCTTTCACAATATT
TGAGTTTTATCAACAAACATTTATAAAGCGTCCATTTTTATAAACCCTAT
TTGGTAATCCGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064856-exon-scaffold_425-1491911889:353565..353778 | TCONS_00064856-exon-scaffold_425-1491911889:353565..353778 | Clytia hemisphaerica | exon |
| TCONS_00064856-exon-scaffold_425-1510915933:353565..353778 | TCONS_00064856-exon-scaffold_425-1510915933:353565..353778 | Clytia hemisphaerica | exon |
| TCONS_00064856-exon-scaffold_425-1575043694:353565..353778 | TCONS_00064856-exon-scaffold_425-1575043694:353565..353778 | Clytia hemisphaerica | exon |
| TCONS_00064856-exon-scaffold_425-1491911889:354586..355678 | TCONS_00064856-exon-scaffold_425-1491911889:354586..355678 | Clytia hemisphaerica | exon |
| TCONS_00064856-exon-scaffold_425-1510915933:354586..355678 | TCONS_00064856-exon-scaffold_425-1510915933:354586..355678 | Clytia hemisphaerica | exon |
| TCONS_00064856-exon-scaffold_425-1575043694:354586..355678 | TCONS_00064856-exon-scaffold_425-1575043694:354586..355678 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_425 | supercontig | scaffold_425:353565..355678 + |
Blast
The following BLAST results are available for this feature:
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