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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064836 ID=TCONS_00064836|Name=TCONS_00064836|organism=Clytia hemisphaerica|type=transcript|length=2886bpRun BLAST on NCBI protein sequence of TCONS_00064836-protein >TCONS_00064836-protein ID=TCONS_00064836-protein|Name=TCONS_00064836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=710bp QMETDFLVEVQNEQVNVELQQANIRTELQSSISGGISDGKWHTLTLTIEDRun BLAST on NCBI transcript from alignment at scaffold_425:70581..77820+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064836 ID=TCONS_00064836|Name=TCONS_00064836|organism=Clytia hemisphaerica|type=transcript|length=7240bp|location=Sequence derived from alignment at scaffold_425:70581..77820+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_425:70581..77820+ >TCONS_00064836 ID=TCONS_00064836|Name=TCONS_00064836|organism=Clytia hemisphaerica|type=CDS|length=21330bp|location=Sequence derived from alignment at scaffold_425:70581..77820+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00064836 vs. Swiss-Prot (Human)
Match: LAMA4 (Laminin subunit alpha-4 OS=Homo sapiens GN=LAMA4 PE=1 SV=4) HSP 1 Score: 141.739 bits (356), Expect = 5.880e-34 Identity = 101/370 (27.30%), Postives = 175/370 (47.30%), Query Frame = 1
Query: 1042 VANAYGFGFEDESYIEFGVMKGKLDTKADYEFSFYTMEEEGLLMSGFMKSPYDYEAIYLAGGKAHYIFNAGAGSLTLSSKSTVNDGKWHTIKATRSKRAGTLYVDGDIAAVGESKPGASAVNNIN-KVYFGGLPSTSLVIP-KTPKTSQI----PLKGGMKDFKLFNEALVTPAASVGTSPAYNGLPYVNAVSFGANGGFAQKFKQLKIGQNFKISFDVRAANKAGSLFYVYG-GGDHLSVTVEENGSIKVTCNNGGGLFSVAYKPEPSVCNGDIYSVLVEKKMKTLKLTVNGAVXXXXXXXXXXXXXXXXPAYFGGLPDNLRSNWSKISDSKDYKPFEGCISKVEINDEAIDFTSDVIKNGAV-MTGCP 2127
+ +AY +G S EF +KG K+ + T G++ + D+ ++LA G+ Y+FN G L + S+ NDG WH + R + +G L +DG + + ES P A I +Y GG V P K K QI G + + +L ++ + + + +P + G P F GG+ + IG F+I+F+VR + +G+L + + G++L+V + +NG + V NNG FS + P+ S+C+G + + V + ++L V+ V + D P + GG+P++L + +++ S KPF GCI I+ + F+ + +GAV + CP
Sbjct: 1466 IEHAYQYGGTANSRQEFEHLKGDFGAKSQFSIRLRTRSSHGMIFYVSDQEENDFMTLFLAHGRLVYMFNVGHKKLKIRSQEKYNDGLWHDVIFIRERSSGRLVIDG-LRVLEESLPPTEATWKIKGPIYLGG------VAPGKAVKNVQINSIYSFSGCLSNLQLNGASITSASQTFSVTPCFEG-PMETGTYFSTEGGYVVLDESFNIGLKFEIAFEVRPRSSSGTLVHGHSVNGEYLNVHM-KNGQVIVKVNNGIRDFSTSVTPKQSLCDGRWHRITVIRDSNVVQLDVDSEVNHVVGPLNPKPIDHREPVFVGGVPESLLT--PRLAPS---KPFTGCIRHFVIDGHPVSFSKAALVSGAVSINSCP 1821 The following BLAST results are available for this feature:
BLAST of TCONS_00064836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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