TCONS_00064809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064809
Unique NameTCONS_00064809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064809 ID=TCONS_00064809|Name=TCONS_00064809|organism=Clytia hemisphaerica|type=transcript|length=339bp
ATAGAACTAATCCCACCATGTGGTCTCCATCTTATTTTGGCCCACCATAG
ATATCTTTGGAAATTCATGCACGATATCATTAGCAAACGAAATCAAGAAT
CTCTGATACCTGTTGCGCTACGGAAGATAGGATGTACCTATATAGCTTTC
CAAATAGAAAGTTACTTTAACAGcaaaaagaaGCACTACGACGGttctga
aaagttaaaaatgatTGGTAACGACTGCAAACTTCTTGAAAGtaatattg
atacctttttaaatgaatttgtTGAGGACAAAGGCGATGATTGGAATTCT
CCCCGTAGTCGGAAGCTGCTACAAGTCCTTAGACTTTAC
Run BLAST on NCBI

protein sequence of TCONS_00064809-protein

>TCONS_00064809-protein ID=TCONS_00064809-protein|Name=TCONS_00064809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
IELIPPCGLHLILAHHRYLWKFMHDIISKRNQESLIPVALRKIGCTYIAF
QIESYFNSKKKHYDGSEKLKMIGNDCKLLESNIDTFLNEFVEDKGDDWNS
PRSRKLLQVLRLY
Run BLAST on NCBI

transcript from alignment at scaffold_424:24153..25043+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064809 ID=TCONS_00064809|Name=TCONS_00064809|organism=Clytia hemisphaerica|type=transcript|length=891bp|location=Sequence derived from alignment at scaffold_424:24153..25043+ (Clytia hemisphaerica)
ATAGAACTAATCCCACCATGTGGTCTCCATCTTATTTTGGCCCACCATAG
ATATCTTTGGAAATTCATGCACGATATCATTAGCAAACGAAATCAAGAAT
CTCTGATACCTGTTGCGCTACGGAAGATAGGATGTACCTATATAGCTTTC
CAAATAGAAAGTTACTTTAACAGGTATTATTAGGCTATTTCAGGAAGAAT
TGTTTTATACTGCTGTTAAGGATATCAAAACATTTGATGGCTACCCGTTG
GATTTTTCAACAAGGGTGTACGATATTCTCTTTTTGAAACCCCCCCTCCC
CGAAGCGGCCCTTGTTATTGATACAAGAGAGAGAGGAGtttccagggaga
aagagtggcgccctcccctaccttcgggtagatagctatcgaaagaggag
ccttcgggtcgcctccgactgcggtcgcagacttacttattgATACAAGT
ACATTGCACGTATTCATGATAACATTTACTGTGTCTGAGAATTCTTGGGA
ACAAAGGATCTTGTTTAGTATTTCTATTTACGTTATCGGCTGCACAAAGA
ATCTACTTTATCGGACATAAAGATATCTTACTTATTTTCCGTCGAACAAA
ATCTTTTACCtgaaaaaattttcgtcacCTCCAATAAAATatttcgtcac
ttttgtcctacatttttttgcccaaaaaggTATATCATTGTAGTAATcac
gtttttatattttttcaatttttagcaaaaagaaGCACTACGACGGttct
gaaaagttaaaaatgatTGGTAACGACTGCAAACTTCTTGAAAGtaatat
tgatacctttttaaatgaatttgtTGAGGACAAAGGCGATGATTGGAATT
CTCCCCGTAGTCGGAAGCTGCTACAAGTCCTTAGACTTTAC

Coding sequence (CDS) from alignment at scaffold_424:24153..25043+

>TCONS_00064809 ID=TCONS_00064809|Name=TCONS_00064809|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_424:24153..25043+ (Clytia hemisphaerica)
ATAGAACTAATCCCACCATGTGGTCTCCATCTTATTTTGGCCCACCATAG
ATATCTTTGGAAATTCATGCACGATATCATTAGCAAACGAAATCAAGAAT
CTCTGATACCTGTTGCGCTACGGAAGATAGGATGTACCTATATAGCTTTC
CAAATAGAAAGTTACTTTAACAGcaaaaagaaGCACTACGACGGttctga
aaagttaaaaatgatTGGTAACGACTGCAAACTTCTTGAAAGtaatattg
atacctttttaaatgaatttgtTGAGGACAAAGGCGATGATTGGAATTCT
CCCCGTAGTCGGAAGCTGCTACAAGTCCTTAGACTTTACATAGAACTAAT
CCCACCATGTGGTCTCCATCTTATTTTGGCCCACCATAGATATCTTTGGA
AATTCATGCACGATATCATTAGCAAACGAAATCAAGAATCTCTGATACCT
GTTGCGCTACGGAAGATAGGATGTACCTATATAGCTTTCCAAATAGAAAG
TTACTTTAACAGcaaaaagaaGCACTACGACGGttctgaaaagttaaaaa
tgatTGGTAACGACTGCAAACTTCTTGAAAGtaatattgataccttttta
aatgaatttgtTGAGGACAAAGGCGATGATTGGAATTCTCCCCGTAGTCG
GAAGCTGCTACAAGTCCTTAGACTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040651XLOC_040651Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064809-proteinTCONS_00064809-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064809-exon-scaffold_424-1491911889:24153..24325TCONS_00064809-exon-scaffold_424-1491911889:24153..24325Clytia hemisphaericaexon
TCONS_00064809-exon-scaffold_424-1510915933:24153..24325TCONS_00064809-exon-scaffold_424-1510915933:24153..24325Clytia hemisphaericaexon
TCONS_00064809-exon-scaffold_424-1575043694:24153..24325TCONS_00064809-exon-scaffold_424-1575043694:24153..24325Clytia hemisphaericaexon
TCONS_00064809-exon-scaffold_424-1491911889:24878..25043TCONS_00064809-exon-scaffold_424-1491911889:24878..25043Clytia hemisphaericaexon
TCONS_00064809-exon-scaffold_424-1510915933:24878..25043TCONS_00064809-exon-scaffold_424-1510915933:24878..25043Clytia hemisphaericaexon
TCONS_00064809-exon-scaffold_424-1575043694:24878..25043TCONS_00064809-exon-scaffold_424-1575043694:24878..25043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_424supercontigscaffold_424:24153..25043 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.272903	0	0	0	1.84013	2.32655	3.15774	3.94166	3.44956	1.42428	1.38244	1.81752	1.6335	0.188489	0.619854	1.3304	0.614603	0.209983	1.16041	2.73214	0.263859	0	0.312906	0.85343	1.17202	0.261499	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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