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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064808 ID=TCONS_00064808|Name=TCONS_00064808|organism=Clytia hemisphaerica|type=transcript|length=1082bp
TGCAACAAAGCTGTTAAGGCGAGAAATGAAAAGATTCATAAACTTGTTGA
ATATGCTTCATTTGGAGACATTTCAAGTTACGTTTCGTATGTTTGCGATC
ATTACTTCGATACCATTGTGGAGTCAGCAATCCAAAGCTTATcggaaaat
aatttgaaaaagtttataaaaacattgaaagttgTGAAAAAACCCGTGAC
ACTAGAGAGCAAAGAAACTGCTCGAATAATGATGGGGAAATATGATATGT
CACAAAGAGCATTTAAAGAACTTAGAGCAACATTGAAATCTTGTAATGTT
ACTTTACCATCGTACGATGATTTGAGAGAATATTGCAAAAATCTTGAAGT
TGGTAATATTTTTCCGTTGCATGGTAGTAATGAATCTGAATGTCAATGTA
TGGGCTACGGTTGTACTGTTAAAGATACTTTAGAGAGAGTTTTTGGTTGT
AACAAATATCAACATAAACTATCTTTCATAGAGGCTGATCGAAATAAAAA
GCTTGGAGACTTTCTGAAATCGAAAAATACACATCTATATCAGAATTTTA
AAAATGAGAGGAGAACAATCATCCTCAGAGACACTGGCGATAATTTTCGT
GGAGCAGGCCGTTATCCAACTGAACAGACATCGTTTTCAATCATGAATAT
TCAAGACTTAGTGAGTGGTCCCTACGGCCAATTCATAACTACCTTATGGC
GTGGTTCAGAAAGCCGCGAGACATTGGAGATGCATTGTAAGCATCACTAC
CAAGAACTTTCAGAACTGGTGAAAAATGGCGTTCGATTAACATTAAACGG
AGAAGTCCCTGAAGAGTTCAATGTTGTCGTCTTTTTGGTTGCAGATTTGG
CGTTTGTAAAAGAAGTTCTGGGAAAATGTTCCTGCACTCAAGCATATGGC
TGTTTCCATTGCAAGCTCAACATCAATCAATGGTCATCATGTAAAGCAAA
AATTGGAGAAAGTAGAACCATGAATGAAATGAATGTGATGGGATCAGCTG
CACGAAGTAAACTTGGGGATGGTCCAAATAAAGACAGTGCTGCATacaaa
aatttaattgcaaatAATTACGGTCAATGGGT Run BLAST on NCBI protein sequence of TCONS_00064808-protein >TCONS_00064808-protein ID=TCONS_00064808-protein|Name=TCONS_00064808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
CNKAVKARNEKIHKLVEYASFGDISSYVSYVCDHYFDTIVESAIQSLSEN
NLKKFIKTLKVVKKPVTLESKETARIMMGKYDMSQRAFKELRATLKSCNV
TLPSYDDLREYCKNLEVGNIFPLHGSNESECQCMGYGCTVKDTLERVFGC
NKYQHKLSFIEADRNKKLGDFLKSKNTHLYQNFKNERRTIILRDTGDNFR
GAGRYPTEQTSFSIMNIQDLVSGPYGQFITTLWRGSESRETLEMHCKHHY
QELSELVKNGVRLTLNGEVPEEFNVVVFLVADLAFVKEVLGKCSCTQAYG
CFHCKLNINQWSSCKAKIGESRTMNEMNVMGSAARSKLGDGPNKDSAAYK
NLIANNYGQW Run BLAST on NCBI transcript from alignment at scaffold_424:21888..23516+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064808 ID=TCONS_00064808|Name=TCONS_00064808|organism=Clytia hemisphaerica|type=transcript|length=1629bp|location=Sequence derived from alignment at scaffold_424:21888..23516+ (Clytia hemisphaerica)
TGCAACAAAGCTGTTAAGGCGAGAAATGAAAAGATTCATAAACTTGTTGA
ATATGCTTCATTTGGAGACATTTCAAGTATGTTTTTAGTGTTTTTGAAGG
TATTCTAAGATGCCATAAATGATATTCAGTAAAATCTAGCCGATTATTGT
TGGTTCTGTTTTTGAGTTTGAGGTCTAAACAATTACCTATTTTTTGTTAT
TCagccaattttcaattttctagtccagataaaaattacttgaaaattgt
taaaatatgCCTTTGACCTTTACATAATTTATGCCAAGGTTCTATAAAGC
GTACGAAAGACAGAGACCAGAGGCAATTTGGAAAAATaacaatataattt
tgtatcccaatcaataaaaaaatctgtttttgaTAAGCCCGTTGGATTTT
ATTACTCGTtatttatccccactgaaaaaacAATTcccactgatacaggg
gtgtaatacGGTTTTTTCTGACAGTCATTTCATTTCCTTACGTATTCAGG
TTACGTTTCGTATGTTTGCGATCATTACTTCGATACCATTGTGGAGTCAG
CAATCCACAGCTTATCGgtatatttgaaaaagtttataaaaacattgaaa
tNTTCATTTCCTTACGTATTCAGGTTACGTTTCGTATGTTTGCGATCATT
ACTTCGATACCATTGTGGAGTCAGCAATCCAAAGCTTATcggaaaataat
ttgaaaaagtttataaaaacattgaaagttgTGAAAAAACCCGTGACACT
AGAGAGCAAAGAAACTGCTCGAATAATGATGGGGAAATATGATATGTCAC
AAAGAGCATTTAAAGAACTTAGAGCAACATTGAAATCTTGTAATGTTACT
TTACCATCGTACGATGATTTGAGAGAATATTGCAAAAATCTTGAAGTTGG
TAATATTTTTCCGTTGCATGGTAGTAATGAATCTGAATGTCAATGTATGG
GCTACGGTTGTACTGTTAAAGATACTTTAGAGAGAGTTTTTGGTTGTAAC
AAATATCAACATAAACTATCTTTCATAGAGGCTGATCGAAATAAAAAGCT
TGGAGACTTTCTGAAATCGAAAAATACACATCTATATCAGAATTTTAAAA
ATGAGAGGAGAACAATCATCCTCAGAGACACTGGCGATAATTTTCGTGGA
GCAGGCCGTTATCCAACTGAACAGACATCGTTTTCAATCATGAATATTCA
AGACTTAGTGAGTGGTCCCTACGGCCAATTCATAACTACCTTATGGCGTG
GTTCAGAAAGCCGCGAGACATTGGAGATGCATTGTAAGCATCACTACCAA
GAACTTTCAGAACTGGTGAAAAATGGCGTTCGATTAACATTAAACGGAGA
AGTCCCTGAAGAGTTCAATGTTGTCGTCTTTTTGGTTGCAGATTTGGCGT
TTGTAAAAGAAGTTCTGGGAAAATGTTCCTGCACTCAAGCATATGGCTGT
TTCCATTGCAAGCTCAACATCAATCAATGGTCATCATGTAAAGCAAAAAT
TGGAGAAAGTAGAACCATGAATGAAATGAATGTGATGGGATCAGCTGCAC
GAAGTAAACTTGGGGATGGTCCAAATAAAGACAGTGCTGCATacaaaaat
ttaattgcaaatAATTACGGTCAATGGGT Coding sequence (CDS) from alignment at scaffold_424:21888..23516+ >TCONS_00064808 ID=TCONS_00064808|Name=TCONS_00064808|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_424:21888..23516+ (Clytia hemisphaerica)
TGCAACAAAGCTGTTAAGGCGAGAAATGAAAAGATTCATAAACTTGTTGA
ATATGCTTCATTTGGAGACATTTCAAGTTACGTTTCGTATGTTTGCGATC
ATTACTTCGATACCATTGTGGAGTCAGCAATCCAAAGCTTATcggaaaat
aatttgaaaaagtttataaaaacattgaaagttgTGAAAAAACCCGTGAC
ACTAGAGAGCAAAGAAACTGCTCGAATAATGATGGGGAAATATGATATGT
CACAAAGAGCATTTAAAGAACTTAGAGCAACATTGAAATCTTGTAATGTT
ACTTTACCATCGTACGATGATTTGAGAGAATATTGCAAAAATCTTGAAGT
TGGTAATATTTTTCCGTTGCATGGTAGTAATGAATCTGAATGTCAATGTA
TGGGCTACGGTTGTACTGTTAAAGATACTTTAGAGAGAGTTTTTGGTTGT
AACAAATATCAACATAAACTATCTTTCATAGAGGCTGATCGAAATAAAAA
GCTTGGAGACTTTCTGAAATCGAAAAATACACATCTATATCAGAATTTTA
AAAATGAGAGGAGAACAATCATCCTCAGAGACACTGGCGATAATTTTCGT
GGAGCAGGCCGTTATCCAACTGAACAGACATCGTTTTCAATCATGAATAT
TCAAGACTTAGTGAGTGGTCCCTACGGCCAATTCATAACTACCTTATGGC
GTGGTTCAGAAAGCCGCGAGACATTGGAGATGCATTGTAAGCATCACTAC
CAAGAACTTTCAGAACTGGTGAAAAATGGCGTTCGATTAACATTAAACGG
AGAAGTCCCTGAAGAGTTCAATGTTGTCGTCTTTTTGGTTGCAGATTTGG
CGTTTGTAAAAGAAGTTCTGGGAAAATGTTCCTGCACTCAAGCATATGGC
TGTTTCCATTGCAAGCTCAACATCAATCAATGGTCATCATGTAAAGCAAA
AATTGGAGAAAGTAGAACCATGAATGAAATGAATGTGATGGGATCAGCTG
CACGAAGTAAACTTGGGGATGGTCCAAATAAAGACAGTGCTGCATacaaa
aatttaattgcaaatAATTACGGTCAATGGTGCAACAAAGCTGTTAAGGC
GAGAAATGAAAAGATTCATAAACTTGTTGAATATGCTTCATTTGGAGACA
TTTCAAGTTACGTTTCGTATGTTTGCGATCATTACTTCGATACCATTGTG
GAGTCAGCAATCCAAAGCTTATcggaaaataatttgaaaaagtttataaa
aacattgaaagttgTGAAAAAACCCGTGACACTAGAGAGCAAAGAAACTG
CTCGAATAATGATGGGGAAATATGATATGTCACAAAGAGCATTTAAAGAA
CTTAGAGCAACATTGAAATCTTGTAATGTTACTTTACCATCGTACGATGA
TTTGAGAGAATATTGCAAAAATCTTGAAGTTGGTAATATTTTTCCGTTGC
ATGGTAGTAATGAATCTGAATGTCAATGTATGGGCTACGGTTGTACTGTT
AAAGATACTTTAGAGAGAGTTTTTGGTTGTAACAAATATCAACATAAACT
ATCTTTCATAGAGGCTGATCGAAATAAAAAGCTTGGAGACTTTCTGAAAT
CGAAAAATACACATCTATATCAGAATTTTAAAAATGAGAGGAGAACAATC
ATCCTCAGAGACACTGGCGATAATTTTCGTGGAGCAGGCCGTTATCCAAC
TGAACAGACATCGTTTTCAATCATGAATATTCAAGACTTAGTGAGTGGTC
CCTACGGCCAATTCATAACTACCTTATGGCGTGGTTCAGAAAGCCGCGAG
ACATTGGAGATGCATTGTAAGCATCACTACCAAGAACTTTCAGAACTGGT
GAAAAATGGCGTTCGATTAACATTAAACGGAGAAGTCCCTGAAGAGTTCA
ATGTTGTCGTCTTTTTGGTTGCAGATTTGGCGTTTGTAAAAGAAGTTCTG
GGAAAATGTTCCTGCACTCAAGCATATGGCTGTTTCCATTGCAAGCTCAA
CATCAATCAATGGTCATCATGTAAAGCAAAAATTGGAGAAAGTAGAACCA
TGAATGAAATGAATGTGATGGGATCAGCTGCACGAAGTAAACTTGGGGAT
GGTCCAAATAAAGACAGTGCTGCATacaaaaatttaattgcaaatAATTA
CGGTCAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064808-exon-scaffold_424-1491911889:21888..21963 | TCONS_00064808-exon-scaffold_424-1491911889:21888..21963 | Clytia hemisphaerica | exon |
| TCONS_00064808-exon-scaffold_424-1510915933:21888..21963 | TCONS_00064808-exon-scaffold_424-1510915933:21888..21963 | Clytia hemisphaerica | exon |
| TCONS_00064808-exon-scaffold_424-1575043694:21888..21963 | TCONS_00064808-exon-scaffold_424-1575043694:21888..21963 | Clytia hemisphaerica | exon |
| TCONS_00064808-exon-scaffold_424-1491911889:22511..23516 | TCONS_00064808-exon-scaffold_424-1491911889:22511..23516 | Clytia hemisphaerica | exon |
| TCONS_00064808-exon-scaffold_424-1510915933:22511..23516 | TCONS_00064808-exon-scaffold_424-1510915933:22511..23516 | Clytia hemisphaerica | exon |
| TCONS_00064808-exon-scaffold_424-1575043694:22511..23516 | TCONS_00064808-exon-scaffold_424-1575043694:22511..23516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_424 | supercontig | scaffold_424:21888..23516 + |
Blast
The following BLAST results are available for this feature:
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