TCONS_00064806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064806
Unique NameTCONS_00064806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064806 ID=TCONS_00064806|Name=TCONS_00064806|organism=Clytia hemisphaerica|type=transcript|length=665bp
TGAGTGAGCTTGGTACTTCAAACTACTGAAATTTGACttggaaacacccc
tgtctcaacgaCAATAATTTAGCAAAGTCCTTGGTAGAATACATTTCGTG
AAACATAAAGTTTGGCCATGAAGtttaagaagttttttctttatccttCT
GGAGCATTCTTTTTCCCGTGGAAAGAAAAGGTAGTTTTCAACGTCTCAAC
CGcagctaaaaaatctttaaacatcaaatttactattcgtcttttatttt
ttcaggatcGCAAATGTGTGAAGGAGACCAAAGAAATCGCAATCAAGATA
TCGTTTTTTAACACTTCGATGTTCGAATAGCAATCATACTGGAAACGTTT
GGAAAGATTATCACGAAGAGAAGGAGGACGGAAGGACGGAAGAGaaagaa
catcaaatttttgatttcattacgtttaatttatactgattgtagatttt
catacccagaaaattatatagaaaagagcattcaaagaaaattcaaatat
gTGTACagtctttctcataatagtgcAATGAATAGGAATTATTTTGGCAA
AGGACGTCTTAGAGACGTGTTAAAACTAATCTAATAACTTTTAAAGACGT
TTTTAAGTCGTCTCAGAAACGTACCATactgaaattaataaaattaagaC
GTCTCGGAAACGTCC
Run BLAST on NCBI

transcript from alignment at scaffold_423:493598..494262

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064806 ID=TCONS_00064806|Name=TCONS_00064806|organism=Clytia hemisphaerica|type=transcript|length=665bp|location=Sequence derived from alignment at scaffold_423:493598..494262 (Clytia hemisphaerica)
GGACGTTTCCGAGACGtcttaattttattaatttcagtATGGTACGTTTC
TGAGACGACTTAAAAACGTCTTTAAAAGTTATTAGATTAGTTTTAACACG
TCTCTAAGACGTCCTTTGCCAAAATAATTCCTATTCATTgcactattatg
agaaagactGTACAcatatttgaattttctttgaatgctcttttctatat
aattttctgggtatgaaaatctacaatcagtataaattaaacgtaatgaa
atcaaaaatttgatgttctttCTCTTCCGTCCTTCCGTCCTCCTTCTCTT
CGTGATAATCTTTCCAAACGTTTCCAGTATGATTGCTATTCGAACATCGA
AGTGTTAAAAAACGATATCTTGATTGCGATTTCTTTGGTCTCCTTCACAC
ATTTGCgatcctgaaaaaataaaagacgaatagtaaatttgatgtttaaa
gattttttagctgCGGTTGAGACGTTGAAAACTACCTTTTCTTTCCACGG
GAAAAAGAATGCTCCAGaaggataaagaaaaaacttcttaaaCTTCATGG
CCAAACTTTATGTTTCACGAAATGTATTCTACCAAGGACTTTGCTAAATT
ATTGtcgttgagacaggggtgtttccaaGTCAAATTTCAGTAGTTTGAAG
TACCAAGCTCACTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040648XLOC_040648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064806-exon-scaffold_423-1491911889:493598..494262TCONS_00064806-exon-scaffold_423-1491911889:493598..494262Clytia hemisphaericaexon
TCONS_00064806-exon-scaffold_423-1510915933:493598..494262TCONS_00064806-exon-scaffold_423-1510915933:493598..494262Clytia hemisphaericaexon
TCONS_00064806-exon-scaffold_423-1575043694:493598..494262TCONS_00064806-exon-scaffold_423-1575043694:493598..494262Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:493598..494262 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.236145	0.353947	0.859018	0.795811	1.09589	0.875719	1.32164	0.759971	1.01064	0.712074	0.487818	0.885928	0.720585	0.429891	0	0.413035	0.175217	0.134354	0.193234	0.310486	0.805084	0.280846	0	0	11.8056	7.76076	0	0	0.319974	0.118145
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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