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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064799 ID=TCONS_00064799|Name=TCONS_00064799|organism=Clytia hemisphaerica|type=transcript|length=1041bp
TGTATTCTATCATTATTTATGATCTGTTAGGAGAATTCACATCTGATAAA
GCTTAACCCAAACTAAAAGTAGATAAGGAAAACCGAGGTTATTCAATTAT
TTGATAGCGCTGCTCGTCAtaatttttccaatttattACCGGCGGGACGA
TGTTTAGCTTACTTCAAGAAACACAATTCTTCAAAAAACCTGCCAAAAAG
AAGAAGCAGGAACGGATTCGATTCGACATTAACGGAAACATTCAACTAGC
AGCAAAACATCGATCAGATTTCGGGCGAAATATCCGTAAGATATCGTACG
ATCTCGATAGCGAATCGATTCATCGACACTACTACGAAGCGAATGATGGT
TTTCTCGCATTAATGAACGAGTTTAATTTACGTAATACACACAGTTCGTT
TTTCACGTGCGCCGGTTACGTCAACGTTAAATTGCGCATGTGTAGTAAAT
GTTTTGACGTCGAAAAGGATCAAAAGTCTCGCGATCTTTACTTTATTGAT
CATCGTGCACTCTCCATGGCTCCTAAAGTTTTGTGTTTTGGGTGTTTAGG
TTTCATCTTGAACGAATTTGAAAAATGCTTACTTTATGAGGTAGAAGAAG
AAGAGAGTGGAAACCACACTGATTGCTCAAAAGAATGAGTGGAAACCACG
CTGATTGTTGAAGGGAATgactgaaaatttgaaacaagaTGGCGCGGAAG
GATAATGAGAAAACTCTGGAAGTCTATCCATCCACATCCAGTACAAACTT
TGGAGGGAAATCTTTATTGATAATACTCCGAGCGCATTCTCTAAAAGGGG
ATTCGAACTTTTTTGATTGCACAGAAATTAAGCCCGCAATGCAATTTTAA
ACATATGTTAGGTTTGTATATAATAATTACTTAGCTTTTAGTTGGATAAT
GTAAATAActgtaaaaaattataaatttagaGAACTTCTTTGTTGTCCTT
TATCAAACATCAAATCCACTGTCGATTCAGAGGTTACAAAGCAAGCCTTT
TCCTCTGAGACTCttcaaggttttatttttacataagtgtt Run BLAST on NCBI protein sequence of TCONS_00064799-protein >TCONS_00064799-protein ID=TCONS_00064799-protein|Name=TCONS_00064799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MFSLLQETQFFKKPAKKKKQERIRFDINGNIQLAAKHRSDFGRNIRKISY
DLDSESIHRHYYEANDGFLALMNEFNLRNTHSSFFTCAGYVNVKLRMCSK
CFDVEKDQKSRDLYFIDHRALSMAPKVLCFGCLGFILNEFEKCLLYEVEE
EESGNHTDCSKE Run BLAST on NCBI transcript from alignment at scaffold_423:269531..270571 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064799 ID=TCONS_00064799|Name=TCONS_00064799|organism=Clytia hemisphaerica|type=transcript|length=1041bp|location=Sequence derived from alignment at scaffold_423:269531..270571 (Clytia hemisphaerica)
aacacttatgtaaaaataaaaccttgaaGAGTCTCAGAGGAAAAGGCTTG
CTTTGTAACCTCTGAATCGACAGTGGATTTGATGTTTGATAAAGGACAAC
AAAGAAGTTCtctaaatttataattttttacagTTATTTACATTATCCAA
CTAAAAGCTAAGTAATTATTATATACAAACCTAACATATGTTTAAAATTG
CATTGCGGGCTTAATTTCTGTGCAATCAAAAAAGTTCGAATCCCCTTTTA
GAGAATGCGCTCGGAGTATTATCAATAAAGATTTCCCTCCAAAGTTTGTA
CTGGATGTGGATGGATAGACTTCCAGAGTTTTCTCATTATCCTTCCGCGC
CAtcttgtttcaaattttcagtcATTCCCTTCAACAATCAGCGTGGTTTC
CACTCATTCTTTTGAGCAATCAGTGTGGTTTCCACTCTCTTCTTCTTCTA
CCTCATAAAGTAAGCATTTTTCAAATTCGTTCAAGATGAAACCTAAACAC
CCAAAACACAAAACTTTAGGAGCCATGGAGAGTGCACGATGATCAATAAA
GTAAAGATCGCGAGACTTTTGATCCTTTTCGACGTCAAAACATTTACTAC
ACATGCGCAATTTAACGTTGACGTAACCGGCGCACGTGAAAAACGAACTG
TGTGTATTACGTAAATTAAACTCGTTCATTAATGCGAGAAAACCATCATT
CGCTTCGTAGTAGTGTCGATGAATCGATTCGCTATCGAGATCGTACGATA
TCTTACGGATATTTCGCCCGAAATCTGATCGATGTTTTGCTGCTAGTTGA
ATGTTTCCGTTAATGTCGAATCGAATCCGTTCCTGCTTCTTCTTTTTGGC
AGGTTTTTTGAAGAATTGTGTTTCTTGAAGTAAGCTAAACATCGTCCCGC
CGGTaataaattggaaaaattaTGACGAGCAGCGCTATCAAATAATTGAA
TAACCTCGGTTTTCCTTATCTACTTTTAGTTTGGGTTAAGCTTTATCAGA
TGTGAATTCTCCTAACAGATCATAAATAATGATAGAATACA Coding sequence (CDS) from alignment at scaffold_423:269531..270571 >TCONS_00064799 ID=TCONS_00064799|Name=TCONS_00064799|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_423:269531..270571 (Clytia hemisphaerica)
TCATTCTTTTGAGCAATCAGTGTGGTTTCCACTCTCTTCTTCTTCTACCT
CATAAAGTAAGCATTTTTCAAATTCGTTCAAGATGAAACCTAAACACCCA
AAACACAAAACTTTAGGAGCCATGGAGAGTGCACGATGATCAATAAAGTA
AAGATCGCGAGACTTTTGATCCTTTTCGACGTCAAAACATTTACTACACA
TGCGCAATTTAACGTTGACGTAACCGGCGCACGTGAAAAACGAACTGTGT
GTATTACGTAAATTAAACTCGTTCATTAATGCGAGAAAACCATCATTCGC
TTCGTAGTAGTGTCGATGAATCGATTCGCTATCGAGATCGTACGATATCT
TACGGATATTTCGCCCGAAATCTGATCGATGTTTTGCTGCTAGTTGAATG
TTTCCGTTAATGTCGAATCGAATCCGTTCCTGCTTCTTCTTTTTGGCAGG
TTTTTTGAAGAATTGTGTTTCTTGAAGTAAGCTAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064799-exon-scaffold_423-1491911889:269531..270571 | TCONS_00064799-exon-scaffold_423-1491911889:269531..270571 | Clytia hemisphaerica | exon |
| TCONS_00064799-exon-scaffold_423-1510915933:269531..270571 | TCONS_00064799-exon-scaffold_423-1510915933:269531..270571 | Clytia hemisphaerica | exon |
| TCONS_00064799-exon-scaffold_423-1575043694:269531..270571 | TCONS_00064799-exon-scaffold_423-1575043694:269531..270571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_423 | supercontig | scaffold_423:269531..270571 . |
Blast
The following BLAST results are available for this feature:
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