TCONS_00064780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064780
Unique NameTCONS_00064780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064780 ID=TCONS_00064780|Name=TCONS_00064780|organism=Clytia hemisphaerica|type=transcript|length=696bp
GTCTCTGGCAACCTCTAACAGATTTGTGAATGCTCCTTACAGACCACTAC
CTAGAGCTCAGCGACTTAGACTAGAGTCTATAAACGATATATGGTTTGAT
ACAAACCAAACTAGGTTACATTGGTCATTTATTTAATCATACATACGGAT
AGAAAGCTACcccattaaaaaaatttaactaCAAAGTGAGAAAAGGGTAT
TTAAATACAAATGATATGATAacaattatataaaactttcgTTGGGATAC
ATTACCAAACTGCGTTTGTTTATTGGGTTATTTTACTAGCAGTTGCTTAT
TTTACTGGTTTCTGTTTCtacatttttaagttttttttgttcGAGGTCGG
TCACCAGAAATATTGGAATATGTTGTCAGGTACTTGAAGTGGTAGACCTT
TCCATTGAACAAAACTTCGAAACAACCTACTTTGCATATAGAGGTAGTTG
GGCATGTGTCATCTGGTTAGAATAAGCAAGATTCTGAACACCTCCCATAT
GCGCTGTGGTTGTAAAACATTGTTGGTGATTTGGATAGACGCCAGCAGGG
TAGATGACTTGTGATTGTGGTGGGTAGCCTGCAGCAGGTGGGTAAAAAGC
TTGTTGACCAGGGTATTGACATTGACCAGAAACGACAACACCATTAGGTG
AGACGAGATCAGTAGGAGTTGGGTGCTCGTTCATAACCAATGCTTA
Run BLAST on NCBI

transcript from alignment at scaffold_423:353946..361090-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064780 ID=TCONS_00064780|Name=TCONS_00064780|organism=Clytia hemisphaerica|type=transcript|length=7145bp|location=Sequence derived from alignment at scaffold_423:353946..361090- (Clytia hemisphaerica)
GTCTCTGGCAACCTCTAACAGATTTGTGAATGCTCCTTACAGACCACTAC
CTAGAGCTCAGCGACTTAGACTAGAGTCTATAAACGATATATGGTTTGAT
ACAAACCAAACTAGGTTACATTGGTCATTTATTTAATCATACATACGGAT
AGAAAGCTACCCCATTAAAAAAATTTAACTACAAAGTGAGAAAAGGGTAT
TTAAATACAAATGATATGATAACAATTATATAAAACTTTCGTTGGGATAC
ATTACCAAACTGCGTTTGTTTATTGGGTTATTTTACTAGCAGTTGCTTAT
TTTACTGGTTTCTGTTTCTACATTTTTAAGTTTTTTTTGTTCGAGGTCGG
TCACCAGAAATATTGGAATATGTTGTCAGGTACTTGAAGTGGTAGACCTT
TCCATTGAACAAAACTTCGAAACAACCTACTTTGCATATAGAGGTAGTTG
GGCATGTGTCATCTGGTTAGAATAAGCAAGATTCTGAACACCTCCCATAT
GCGCTGTGGTTGTAAAACATTGTTTGTGATTTGGATAGACGCCAGCAGGG
TAGATGACTTGTGATTGGGGTGGGTAGCCTGCAGCAGATTGTGGTGGGTA
AACGGTTTGTTGACCAGGGTATTGACATTGACCAGAAACGACAACACCAT
TAGGTGAGACGAGATCAGTAGGAGTTGGGTGCTCGTTCATAACCAATGCT
TAAATGACAACATTAAAATGTTTCATAATTGAACTTTACAGTGCTTTATG
AGCCCAAGGGTACGTTTTCAGGCTTTCTAGAATGCACTGTAAGGACCGAA
ACGAGCAGTCTAAGGGGGTGTAAAAAGTGAGAACAACGGAGNACGTACGC
GCGTTTTTCAGGCTTTCTAGAATGCACTGTAAGGACCGAAACGAGCAGTC
TAAGGGTGTAAAAAGTGAGAACAACGGAGATTTTGGGAAATCTGACCCCC
TCACCATCTTTTGTCGTAAAATGAACAAAAAATTCCAAGAAACTGGAAGA
GTCGATTTTTCACCCAAATTTACCCAAATTTGGCTAAATTTTCACTTTCA
AAGGGTTCAATTTCGAGACCCTGATTTTTGCCTGCATATACTGTTTCTTG
ATTTGAGTGCTCGCCCAGGTACTACAGACAGTAATGTGGTTATGTTGCAA
ATGAATGCCCATTTACTCACCTCCTGAGGTATTTGATCGACAACAACAAC
CTGAGTTTCGGCAGCAAGTGATTGAGATGGTCATGGAAATGATAAACTCA
AGGATCATCAGACCCATGATTGTGGCAAAAATTGACACACCAGCTTCCTT
ATCGTCGTCACAATCGCGATAGAGCAGATATTCGTATGCCGTATCGTTTA
CATCTAACAAATTGCAATGCTTGTAATAACTGCAAAGAAGAAGCAAGAAT
TTTTTGCTATTTTCAATGGGCTAACTTTGACTAAATGTTCCAATGGGGGA
CCACGTGGTGATGGGAAATGCACAATTTAGGGATGATTCAACTGAGTTGT
CAGGTTGTCAGTATGGGTTACAGAAGAGACGGTCTTTTTTTATATGTAAA
ATAATTATTTTCATCATGGCTGGCGTGATTGGCATCATTTTCAAATTCGT
GATTTCGTGATTTAAGATTTTAAAGTGCGTGATTGCGTGATCGGAGGAAC
AAAACACGAATCTTATGAATTAGGATACTTACACAAAGCCACTTAAGAAA
AATCTTCCAACAAAAAACGAGACGACACAACACACGATATTGAATCCCAT
ATTGACACCATTGAAAGATGTTTGTTTAGGCTTCTTGGCCGACATCACAC
CAACAATACCGGTGATTAAAATCCAGATACCAAACCAGATGCCAGAATAA
TTTTCATTCACCCAATAATTATGATGGAAAACTGCTTTTGCAACAATCCC
CAAGACAGCAGTTAATACTCCGATCACAATTTGCGTAATCCCTAGAAAAA
TATAATTAAAGATTTTGAAAAAGTTTGAATAGTATATGAGGAGCTTTGAC
TCGATCAGAGATTCCAAATCTTACACTGTATGATATCACCCCTAACGCAC
CTAATCTAAAAATATTAACAAATCTGCACAAATTTATCTTGCTTTATCTT
GCAATCCCATCCCCCTTTTCGTTAATTAATTACAATATCAAAAGAAAGGT
TATAACTTTCACGGTTTTCCAATCATTTCGAAATGAATGATGGGGTTGGA
ACTCGTACAAAGTTCTAGTTGAATTAATTATGAATATATACAGTGCCGTA
GGAAGCATTTTTATATTGAGGGGGCTGAAGTTTAGTGACACCGCGAGGGC
CAACCATGGTTTGGCCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAGCGTGTAGTCCATAGAAC
ATAAATAAAGATCTTACCTAGCCCACTGATAAATTTCACATTCATACTAA
ATGTTCCTTGAGCCGGTACAGTAGCCATGCAATTTGGTCTTATCACAGTT
GGAGGTCCGTGATAGGAATAAGAAGAGCTTCTTTCTGGACAGAAGAGCCT
GCGGATCAACCCAATAGGTATTATAACCAACATTTTTATTCTTTATTTAC
TAAAAAGAATTTACATGATTATAGGTATGAAAAGGTATAACAATCGGCAT
CTACCGACATCGTTACGCAGGCACGACGGAAGCTTTTTATATCTGGTACG
GCGAATGAGGAAATTTAAGCGATTTTATAGCGATTTGACCGACGAAGAGG
AAAACTTCGGGTATNNCAGAAACGTTTCTCATATTTCGCAACCTCTAACA
GATTTGCGAGTGCTCCTTACAGACCACTACCTAAAGCTCAGCGATTTAGA
CTATAAACGAGAGGATTTTTCATATGCGAGATACGAGTTACAAGTTACGA
GTTACGAGTTGCATTTAGAACCACGAGTTGCGAGTTACTTTTTACGAGTT
ACGAGTTACGAGTTGCATTTAGAACCACGAGTTGCGAGTTACTTTTTACG
AGTTACGAGTTACGAGTTGCATTTTAACAAAATAAAATCGCGAGTTGCGA
GTTACGAGTTGCATTTTAACAAAATAAAATCGCGAGTTGCGAGTTACGAG
TTGCATCTTAACACACAAAATTCGCGAGTTGCAAATTAAAAGTGCGAGTT
GCAAATTGAAGGTGCGAGTTGCATATTAAAAGTGTGAGCTGCAAATTAAA
AGTGCGAGCTGCAAATTAAAATCAAGTCTGAGATTGTTATCTTAAATAAT
AACAGCACAAAAAAAGCTAAACCCAAAGCAAAGCATGGAAAATTCAGCCA
AACTGTTTACGTTTTGTGACTAAAGTTGTGAAACCACTCAAATCACACTT
TTTTTCGCTCATTTTTGTATAAAAACAAAACAGAGCTTTACATAACTTTA
AGTTTTGAAAGGAAATGCGCGTGTTTCTTCCTATCGAGAAACATCTTTAA
TGTTGCTTTTAATAAAGTGGACGTTACCTGTCATTTTCAAGACAAAGTGA
CACTTTTTGACAAAATTATTGACAGGCTACTTAAGTGTGATACCTGCAAG
CTTTATTAAACCAAATATTTTAATTGTACAGAATGAGATGCCTTTGATAT
AAATGGATAAATATTGTCAAGAGACAAACTTTGGGAAGGGCAGTTTTAGA
GATTCTAATCAATTATTCTATTGTCCTTATGTTGATAAAATCACTTATTT
TTATGAAATAATGATCTGATGGTCAAATATAAAGCTTCTTTAAGCAATCC
CATCAAAGGTTTTGTCCCCGGGGGTGGGGGGTACTACCCTTGCCGACTGA
CGGGGATGCTCCGCTGAGGTTCCAAAATATGACTCTACATGGGACTGGTT
TTTCAAAAATTTTGCCGAAATTTGCGAAAAGAGTGACCTTGATTGGAACT
GAAAATCCAAAATTTTCTAAAATTTTCTGCTTTTACCCCAAAACTTTCGA
AAAAGGCACTCTACGAAGGACTTATTTGGGGTTTTGTCACCTATAAATTT
GATGCTGATACACGTTTTTTTTTTATAAGGAACCTTAACTTTGCTCTGAG
CCTGGAGTTCCTTATTTTTACAGAAAATTTCAGCCTCAAAGTTCCTTATC
AGTTCCTTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNACCATGATTGTACACGCTTTGCATGTGATCTTATAATTACT
GTAGGTGAAACAACCCCTTAGAGCCATCGTTCTCAGCCTGTTACCTTGTT
ACCCCCTATTACCCCGTGTTACCCCATGTTACCCTTTTTAGTAACAACGC
ATCCAAACCTATTATCCCCGCCCGGGACACTTTTCTCTACAGTTCTTTAC
ACTCGTAAATACTTTTTGTACATTCTTTTTCTTTCTCCACCAAATATTTG
CTCTTCTTATGTATAATAGTGAGCAGCAATAATCATTTAATCATTTAAAA
AATATCTTTCCTTTTATCAATAGANNNNNNAATTTGTAACACGCACTTTT
AATTTGCAACTCGCACTTTTAATTTGCAACTCGCACTTTTAATTTGCAAC
TCGCACTTTCAATTTGCAACTCGCGAATTTTGTGAGTTAAAATGCAATTC
GTAACTCGTAACTCGCGATTTTATTTTGTTAAAATGCAACTCGTAACTCG
TAACTTGTAAAAAGTAACTCGCAACTCGTGGTTCTAAATGCAACTCGTAA
CTGGTAACTCGTAACTCGCAACTCGTATATTATCATATCACATAAACGAT
AAGTATAAACGACTCTATAAACGATATATGGTTTAATACAAAGCAAAATA
GGTTAAATTGGTCATTTATTTAATCATACATACAGAAAGGATTCACGGAT
AGAAAGCAACCCTATAAAATACATATTTAACTACATAGTGAGGAATAGAC
TAGTAAACTAGTCGTTGAAAACAGACTCATATACAAAAAATCAAGCTCCA
AATAAAAAGAATCGAAGGGGTGAAGTTGCTTCTCTTTTCTGAATTTCAAC
GACTAGAAGCTATTTCCCTCAAAAAACGTTGTTTAATTTTACAACTTTTT
TTAGGTTTTTGAGAATCCATCCAACTTTTTTGACTAAATGATATTTCATA
GTAACATTGAACATGGGAACATATTAATAAATATAAGCATTTCTAAAAAC
GCAATAAACAGAAAGGAAAATAAATGCAATCCCGCACGGGTCAGACACAC
AGAAATTTGTATGTCTCTCCTTACGATTTTAGGTGAAGAAAAAAAGGCGT
TGGAAGTAGCTTCTAGTCGGTTATTTTCCTTTTCTCTCATGCACGCTGAA
TATTTAATTAGTGTTTACATTATTTGATTGACAGTTTTATTATAAGGTTA
TAAGTAATAACCGACTAGTTTACTAGTCTAAGTGAGGAAAAGAGTATTTA
AATACAATGATATGATAACAATTACATAATATTTTCGTTGGAATACATTA
CCAAACTTCATTTGTTTATTGGGTTATTTTACTGACAGTTGCTTTTTTTA
CTGGTAATTTTCTGCTTCTACATTTTCAAGTTTTTTTGTTCGAGGTCGGT
CATCAGAAATATTGGAATATGTTGTCAGGTACTTGTGGTGGTAGACGTTT
CCATTGAACAAAACTTTCAAACAATCTACTTTGCATATGGAGGTAGTTGG
GCATGTGTCATCTGGTTAGAATAAGCAAGATTCTGAACACCTCCCATATG
CGCTGTGGTTGTAACACATTGTTGGTGATTTGGATAGACGCCAGCAGGGT
AGATGACTTGTGATTGTGGTGGGTAGCCTGCAGCAGGTGGGTAAAAAGCT
TGTTGACCAGGGTATTGACATTGACCAGAAACGACAACACCATTAGGTGA
GACGAGATCAGTAGGAGTTGGGTGCTCGTTCATAACCAATGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040622XLOC_040622Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064780-exon-scaffold_423-1575043694:360573..361090TCONS_00064780-exon-scaffold_423-1575043694:360573..361090Clytia hemisphaericaexon
TCONS_00064780-exon-scaffold_423-1575043694:353946..354123TCONS_00064780-exon-scaffold_423-1575043694:353946..354123Clytia hemisphaericaexon
TCONS_00064780-exon-scaffold_423-1510915933:360573..361090TCONS_00064780-exon-scaffold_423-1510915933:360573..361090Clytia hemisphaericaexon
TCONS_00064780-exon-scaffold_423-1510915933:353946..354123TCONS_00064780-exon-scaffold_423-1510915933:353946..354123Clytia hemisphaericaexon
TCONS_00064780-exon-scaffold_423-1491911889:360573..361090TCONS_00064780-exon-scaffold_423-1491911889:360573..361090Clytia hemisphaericaexon
TCONS_00064780-exon-scaffold_423-1491911889:353946..354123TCONS_00064780-exon-scaffold_423-1491911889:353946..354123Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:353946..361090 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.250514	0.364027	0	0.933412	0.575367	0.606199	4.58584	3.65864	3.10368	5.14676	3.05515	1.80081	13.2564	15.9609	8.13481	7.71894	4.73574	6.75978	7.75696	12.3051	0.683198	1.23553	0.851451	0.832807	0	0	1.14268	0.873741	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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