TCONS_00064779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064779
Unique NameTCONS_00064779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064779 ID=TCONS_00064779|Name=TCONS_00064779|organism=Clytia hemisphaerica|type=transcript|length=691bp
CTGGCAACCTCTAACAGATTTGTGAATGCTCCTTACAGACCACTACCTAG
AGCTCAGCGACTTAGACTAGAGTCTATAAACGATATATGGTTTGATACAA
ACCAAACTAGGTTACATTGGTCATTTATTTAATCATACATACGGATAGAA
AGCTACcccattaaaaaaatttaactaCAAAGTGAGAAAAGGGTATTTAA
ATACAAATGATATGATAacaattatataaaactttcgTTGGGATACATTA
CCAAACTGCGTTTGTTTATTGGGTTATTTTACTAGCAGTTGCTTATTTTA
CTGGTTTCTGTTTCtacattttcaagtttttttgttcGAGGTCGGTCATC
AGAAATATTGGAATATGTTGTCAGGTACTTGTGGTGGTAGACGTTTCCAT
TGAACAAAACTTTCAAACAATCTACTTTGCATATGGAGGTAGTTGGGCAT
GTGTCATCTGGTTAGAATAAGCAAGATTCTGAACACCTCCCATATGCGCT
GTGGTTGTAACACATTGTTGGTGATTTGGATAGACGCCAGCAGGGTAGAT
GACTTGTGATTGTGGTGGGTAGCCTGCAGCAGGTGGGTAAAAAGCTTGTT
GACCAGGGTATTGACATTGACCAGAAACGACAACACCATTAGGTGAGACG
AGATCAGTAGGAGTTGGGTGCTCGTTCATAACCAATGCTTA
Run BLAST on NCBI

transcript from alignment at scaffold_423:353946..361086-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064779 ID=TCONS_00064779|Name=TCONS_00064779|organism=Clytia hemisphaerica|type=transcript|length=7141bp|location=Sequence derived from alignment at scaffold_423:353946..361086- (Clytia hemisphaerica)
CTGGCAACCTCTAACAGATTTGTGAATGCTCCTTACAGACCACTACCTAG
AGCTCAGCGACTTAGACTAGAGTCTATAAACGATATATGGTTTGATACAA
ACCAAACTAGGTTACATTGGTCATTTATTTAATCATACATACGGATAGAA
AGCTACCCCATTAAAAAAATTTAACTACAAAGTGAGAAAAGGGTATTTAA
ATACAAATGATATGATAACAATTATATAAAACTTTCGTTGGGATACATTA
CCAAACTGCGTTTGTTTATTGGGTTATTTTACTAGCAGTTGCTTATTTTA
CTGGTTTCTGTTTCTACATTTTTAAGTTTTTTTTGTTCGAGGTCGGTCAC
CAGAAATATTGGAATATGTTGTCAGGTACTTGAAGTGGTAGACCTTTCCA
TTGAACAAAACTTCGAAACAACCTACTTTGCATATAGAGGTAGTTGGGCA
TGTGTCATCTGGTTAGAATAAGCAAGATTCTGAACACCTCCCATATGCGC
TGTGGTTGTAAAACATTGTTTGTGATTTGGATAGACGCCAGCAGGGTAGA
TGACTTGTGATTGGGGTGGGTAGCCTGCAGCAGATTGTGGTGGGTAAACG
GTTTGTTGACCAGGGTATTGACATTGACCAGAAACGACAACACCATTAGG
TGAGACGAGATCAGTAGGAGTTGGGTGCTCGTTCATAACCAATGCTTAAA
TGACAACATTAAAATGTTTCATAATTGAACTTTACAGTGCTTTATGAGCC
CAAGGGTACGTTTTCAGGCTTTCTAGAATGCACTGTAAGGACCGAAACGA
GCAGTCTAAGGGGGTGTAAAAAGTGAGAACAACGGAGNACGTACGCGCGT
TTTTCAGGCTTTCTAGAATGCACTGTAAGGACCGAAACGAGCAGTCTAAG
GGTGTAAAAAGTGAGAACAACGGAGATTTTGGGAAATCTGACCCCCTCAC
CATCTTTTGTCGTAAAATGAACAAAAAATTCCAAGAAACTGGAAGAGTCG
ATTTTTCACCCAAATTTACCCAAATTTGGCTAAATTTTCACTTTCAAAGG
GTTCAATTTCGAGACCCTGATTTTTGCCTGCATATACTGTTTCTTGATTT
GAGTGCTCGCCCAGGTACTACAGACAGTAATGTGGTTATGTTGCAAATGA
ATGCCCATTTACTCACCTCCTGAGGTATTTGATCGACAACAACAACCTGA
GTTTCGGCAGCAAGTGATTGAGATGGTCATGGAAATGATAAACTCAAGGA
TCATCAGACCCATGATTGTGGCAAAAATTGACACACCAGCTTCCTTATCG
TCGTCACAATCGCGATAGAGCAGATATTCGTATGCCGTATCGTTTACATC
TAACAAATTGCAATGCTTGTAATAACTGCAAAGAAGAAGCAAGAATTTTT
TGCTATTTTCAATGGGCTAACTTTGACTAAATGTTCCAATGGGGGACCAC
GTGGTGATGGGAAATGCACAATTTAGGGATGATTCAACTGAGTTGTCAGG
TTGTCAGTATGGGTTACAGAAGAGACGGTCTTTTTTTATATGTAAAATAA
TTATTTTCATCATGGCTGGCGTGATTGGCATCATTTTCAAATTCGTGATT
TCGTGATTTAAGATTTTAAAGTGCGTGATTGCGTGATCGGAGGAACAAAA
CACGAATCTTATGAATTAGGATACTTACACAAAGCCACTTAAGAAAAATC
TTCCAACAAAAAACGAGACGACACAACACACGATATTGAATCCCATATTG
ACACCATTGAAAGATGTTTGTTTAGGCTTCTTGGCCGACATCACACCAAC
AATACCGGTGATTAAAATCCAGATACCAAACCAGATGCCAGAATAATTTT
CATTCACCCAATAATTATGATGGAAAACTGCTTTTGCAACAATCCCCAAG
ACAGCAGTTAATACTCCGATCACAATTTGCGTAATCCCTAGAAAAATATA
ATTAAAGATTTTGAAAAAGTTTGAATAGTATATGAGGAGCTTTGACTCGA
TCAGAGATTCCAAATCTTACACTGTATGATATCACCCCTAACGCACCTAA
TCTAAAAATATTAACAAATCTGCACAAATTTATCTTGCTTTATCTTGCAA
TCCCATCCCCCTTTTCGTTAATTAATTACAATATCAAAAGAAAGGTTATA
ACTTTCACGGTTTTCCAATCATTTCGAAATGAATGATGGGGTTGGAACTC
GTACAAAGTTCTAGTTGAATTAATTATGAATATATACAGTGCCGTAGGAA
GCATTTTTATATTGAGGGGGCTGAAGTTTAGTGACACCGCGAGGGCCAAC
CATGGTTTGGCCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAAAAAAAAAGCGTGTAGTCCATAGAACATAA
ATAAAGATCTTACCTAGCCCACTGATAAATTTCACATTCATACTAAATGT
TCCTTGAGCCGGTACAGTAGCCATGCAATTTGGTCTTATCACAGTTGGAG
GTCCGTGATAGGAATAAGAAGAGCTTCTTTCTGGACAGAAGAGCCTGCGG
ATCAACCCAATAGGTATTATAACCAACATTTTTATTCTTTATTTACTAAA
AAGAATTTACATGATTATAGGTATGAAAAGGTATAACAATCGGCATCTAC
CGACATCGTTACGCAGGCACGACGGAAGCTTTTTATATCTGGTACGGCGA
ATGAGGAAATTTAAGCGATTTTATAGCGATTTGACCGACGAAGAGGAAAA
CTTCGGGTATNNCAGAAACGTTTCTCATATTTCGCAACCTCTAACAGATT
TGCGAGTGCTCCTTACAGACCACTACCTAAAGCTCAGCGATTTAGACTAT
AAACGAGAGGATTTTTCATATGCGAGATACGAGTTACAAGTTACGAGTTA
CGAGTTGCATTTAGAACCACGAGTTGCGAGTTACTTTTTACGAGTTACGA
GTTACGAGTTGCATTTAGAACCACGAGTTGCGAGTTACTTTTTACGAGTT
ACGAGTTACGAGTTGCATTTTAACAAAATAAAATCGCGAGTTGCGAGTTA
CGAGTTGCATTTTAACAAAATAAAATCGCGAGTTGCGAGTTACGAGTTGC
ATCTTAACACACAAAATTCGCGAGTTGCAAATTAAAAGTGCGAGTTGCAA
ATTGAAGGTGCGAGTTGCATATTAAAAGTGTGAGCTGCAAATTAAAAGTG
CGAGCTGCAAATTAAAATCAAGTCTGAGATTGTTATCTTAAATAATAACA
GCACAAAAAAAGCTAAACCCAAAGCAAAGCATGGAAAATTCAGCCAAACT
GTTTACGTTTTGTGACTAAAGTTGTGAAACCACTCAAATCACACTTTTTT
TCGCTCATTTTTGTATAAAAACAAAACAGAGCTTTACATAACTTTAAGTT
TTGAAAGGAAATGCGCGTGTTTCTTCCTATCGAGAAACATCTTTAATGTT
GCTTTTAATAAAGTGGACGTTACCTGTCATTTTCAAGACAAAGTGACACT
TTTTGACAAAATTATTGACAGGCTACTTAAGTGTGATACCTGCAAGCTTT
ATTAAACCAAATATTTTAATTGTACAGAATGAGATGCCTTTGATATAAAT
GGATAAATATTGTCAAGAGACAAACTTTGGGAAGGGCAGTTTTAGAGATT
CTAATCAATTATTCTATTGTCCTTATGTTGATAAAATCACTTATTTTTAT
GAAATAATGATCTGATGGTCAAATATAAAGCTTCTTTAAGCAATCCCATC
AAAGGTTTTGTCCCCGGGGGTGGGGGGTACTACCCTTGCCGACTGACGGG
GATGCTCCGCTGAGGTTCCAAAATATGACTCTACATGGGACTGGTTTTTC
AAAAATTTTGCCGAAATTTGCGAAAAGAGTGACCTTGATTGGAACTGAAA
ATCCAAAATTTTCTAAAATTTTCTGCTTTTACCCCAAAACTTTCGAAAAA
GGCACTCTACGAAGGACTTATTTGGGGTTTTGTCACCTATAAATTTGATG
CTGATACACGTTTTTTTTTTATAAGGAACCTTAACTTTGCTCTGAGCCTG
GAGTTCCTTATTTTTACAGAAAATTTCAGCCTCAAAGTTCCTTATCAGTT
CCTTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNACCATGATTGTACACGCTTTGCATGTGATCTTATAATTACTGTAG
GTGAAACAACCCCTTAGAGCCATCGTTCTCAGCCTGTTACCTTGTTACCC
CCTATTACCCCGTGTTACCCCATGTTACCCTTTTTAGTAACAACGCATCC
AAACCTATTATCCCCGCCCGGGACACTTTTCTCTACAGTTCTTTACACTC
GTAAATACTTTTTGTACATTCTTTTTCTTTCTCCACCAAATATTTGCTCT
TCTTATGTATAATAGTGAGCAGCAATAATCATTTAATCATTTAAAAAATA
TCTTTCCTTTTATCAATAGANNNNNNAATTTGTAACACGCACTTTTAATT
TGCAACTCGCACTTTTAATTTGCAACTCGCACTTTTAATTTGCAACTCGC
ACTTTCAATTTGCAACTCGCGAATTTTGTGAGTTAAAATGCAATTCGTAA
CTCGTAACTCGCGATTTTATTTTGTTAAAATGCAACTCGTAACTCGTAAC
TTGTAAAAAGTAACTCGCAACTCGTGGTTCTAAATGCAACTCGTAACTGG
TAACTCGTAACTCGCAACTCGTATATTATCATATCACATAAACGATAAGT
ATAAACGACTCTATAAACGATATATGGTTTAATACAAAGCAAAATAGGTT
AAATTGGTCATTTATTTAATCATACATACAGAAAGGATTCACGGATAGAA
AGCAACCCTATAAAATACATATTTAACTACATAGTGAGGAATAGACTAGT
AAACTAGTCGTTGAAAACAGACTCATATACAAAAAATCAAGCTCCAAATA
AAAAGAATCGAAGGGGTGAAGTTGCTTCTCTTTTCTGAATTTCAACGACT
AGAAGCTATTTCCCTCAAAAAACGTTGTTTAATTTTACAACTTTTTTTAG
GTTTTTGAGAATCCATCCAACTTTTTTGACTAAATGATATTTCATAGTAA
CATTGAACATGGGAACATATTAATAAATATAAGCATTTCTAAAAACGCAA
TAAACAGAAAGGAAAATAAATGCAATCCCGCACGGGTCAGACACACAGAA
ATTTGTATGTCTCTCCTTACGATTTTAGGTGAAGAAAAAAAGGCGTTGGA
AGTAGCTTCTAGTCGGTTATTTTCCTTTTCTCTCATGCACGCTGAATATT
TAATTAGTGTTTACATTATTTGATTGACAGTTTTATTATAAGGTTATAAG
TAATAACCGACTAGTTTACTAGTCTAAGTGAGGAAAAGAGTATTTAAATA
CAATGATATGATAACAATTACATAATATTTTCGTTGGAATACATTACCAA
ACTTCATTTGTTTATTGGGTTATTTTACTGACAGTTGCTTTTTTTACTGG
TAATTTTCTGCTTCTACATTTTCAAGTTTTTTTGTTCGAGGTCGGTCATC
AGAAATATTGGAATATGTTGTCAGGTACTTGTGGTGGTAGACGTTTCCAT
TGAACAAAACTTTCAAACAATCTACTTTGCATATGGAGGTAGTTGGGCAT
GTGTCATCTGGTTAGAATAAGCAAGATTCTGAACACCTCCCATATGCGCT
GTGGTTGTAACACATTGTTGGTGATTTGGATAGACGCCAGCAGGGTAGAT
GACTTGTGATTGTGGTGGGTAGCCTGCAGCAGGTGGGTAAAAAGCTTGTT
GACCAGGGTATTGACATTGACCAGAAACGACAACACCATTAGGTGAGACG
AGATCAGTAGGAGTTGGGTGCTCGTTCATAACCAATGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040622XLOC_040622Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064779-exon-scaffold_423-1575043694:360770..361086TCONS_00064779-exon-scaffold_423-1575043694:360770..361086Clytia hemisphaericaexon
TCONS_00064779-exon-scaffold_423-1575043694:353946..354319TCONS_00064779-exon-scaffold_423-1575043694:353946..354319Clytia hemisphaericaexon
TCONS_00064779-exon-scaffold_423-1510915933:360770..361086TCONS_00064779-exon-scaffold_423-1510915933:360770..361086Clytia hemisphaericaexon
TCONS_00064779-exon-scaffold_423-1510915933:353946..354319TCONS_00064779-exon-scaffold_423-1510915933:353946..354319Clytia hemisphaericaexon
TCONS_00064779-exon-scaffold_423-1491911889:360770..361086TCONS_00064779-exon-scaffold_423-1491911889:360770..361086Clytia hemisphaericaexon
TCONS_00064779-exon-scaffold_423-1491911889:353946..354319TCONS_00064779-exon-scaffold_423-1491911889:353946..354319Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:353946..361086 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.431407	0.382278	0.353956	0.643987	1.29709	1.20409	3.04142	3.97769	4.67946	9.68093	3.62097	4.44999	22.4796	22.5482	11.4442	12.5803	7.76931	10.8701	11.0677	17.4741	3.01627	2.47496	2.57853	2.7581	0.488677	0.289059	2.76228	1.33994	0.355672	0.153628
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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