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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064776 ID=TCONS_00064776|Name=TCONS_00064776|organism=Clytia hemisphaerica|type=transcript|length=523bp
AGGAGATAAAGATTTAACATAGAGTTTTTACAATACATGGACACTTTCTG
AAAAGACACCAAGCTGATCACACCTCCACACACATTCTTCACCAAAGACA
CAAAAAATCGCCAACATGGTTAAAATGACATTTGAAGTTTTCGAAGTTTT
GGCAGACATCCGAAAATTCGCTTTCGATTACGTCATCTTCCAACTGCAAC
CAAATGAGGAAATTTTGATCGCTGAGAAGTTTTTGAGGGGTCAAAGTCAA
GCTGCAGGTCAGTGTGACGGGACGCCAGCCAACTTTCATGCTGTTAAGGA
GTTCATCCGAGCAAATCCAGATGAGGGCGTTATTGCAGTTTTCCATTTGA
AAGGGCGTACCGTTGCTTTAAACTGGAGTCCTGACTCGTTTTGCCTAGCA
GACCAATTGGACCATCTTTCAGCGTTCCACAAACTGAGCATCAAACTTCC
AACAGCAAAGAGAATCGATCTTCACTATCTGGAAGATGTCGATTATAAAA
CACTTTCACAATTCGTTGAATAA Run BLAST on NCBI protein sequence of TCONS_00064776-protein >TCONS_00064776-protein ID=TCONS_00064776-protein|Name=TCONS_00064776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MVKMTFEVFEVLADIRKFAFDYVIFQLQPNEEILIAEKFLRGQSQAAGQC
DGTPANFHAVKEFIRANPDEGVIAVFHLKGRTVALNWSPDSFCLADQLDH
LSAFHKLSIKLPTAKRIDLHYLEDVDYKTLSQFVE Run BLAST on NCBI transcript from alignment at scaffold_423:272474..273540- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064776 ID=TCONS_00064776|Name=TCONS_00064776|organism=Clytia hemisphaerica|type=transcript|length=1067bp|location=Sequence derived from alignment at scaffold_423:272474..273540- (Clytia hemisphaerica)
AGGAGATAAAGATTTAACATAGAGTTTTTACAATACATGGACACTTTCTG
AAAAGACACCAAGCTGATCACACCTCCACACACATTCTTCACCAAAGACA
CAAAAAATCGCCAACATGGTAAGTGCGTTTAAACCAAAACCAAAGATTTA
GGACGTAGGATTTTGTAGACCTCAAAATCAACAGCTTCTCTCTAGGAGGC
AATTATAACATAGAATCATCAGAAACCTCCGACTGAGAAGTACGAGAAAC
GCTGAGCTTGAATTTTACTTTAGGGATTTATATTCTACGATACCAAGGTT
AAATTTACTTCATAATCTTCATCCACCAACTTCCAGGTTAAAATGACATT
TGAAGTTTTCGAAGTTTTGGCAGACATCCGAAAATTCGCTTTCGATTACG
TCATCTTCCAACTGCAACCAAATGAGGAAATTTTGATCGCTGAGAAGTTT
TTGAGGGGTCAAAGTCAAGCTGCAGGTCAGTGTGACGGGACGCCAGCCAA
CTTTCATGCTGTTAAGGAGTTCATCCGAGCAAATCCAGATGAGGGCGTTA
TTGCAGTTTTCCATTTGAAAGGGCGTACCGTTGCTTTAAACTGGTGAGTC
TTTATTCAATCAAAAAAGTATTCAAATTGTGCCAAAGGCACCTGTTAGAT
TCTGAATTGATTTCTCCAATAAGCCGAGGTAGTGTGAATTCACCTGTTTA
GCTTCATCCATTATTTTTCAAAATATCAAGCTCAGCAATCAATAAATGTC
TGTGCACTTTTCATCAAGAAGATACATCAAAATCCCTTTTTTACCCTTGC
CAGTTAGACATTTAATTTCAAAATTAATTTCCCAAGACGAAGAAACACGC
TGTATTGAAATTATTTTCAATATCCCTCAAAAGGTTTATTGAACCTCTAC
TCTTGTTTTCTCCTTTCAGGAGTCCTGACTCGTTTTGCCTAGCAGACCAA
TTGGACCATCTTTCAGCGTTCCACAAACTGAGCATCAAACTTCCAACAGC
AAAGAGAATCGATCTTCACTATCTGGAAGATGTCGATTATAAAACACTTT
CACAATTCGTTGAATAA Coding sequence (CDS) from alignment at scaffold_423:272474..273540- >TCONS_00064776 ID=TCONS_00064776|Name=TCONS_00064776|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_423:272474..273540- (Clytia hemisphaerica)
GAGTCCTGACTCGTTTTGCCTAGCAGACCAATTGGACCATCTTTCAGCGT
TCCACAAACTGAGCATCAAACTTCCAACAGCAAAGAGAATCGATCTTCAC
TATCTGGAAGATGTCGATTATAAAACACTTTCACAATTCGTTGAATAAGT
TAAAATGACATTTGAAGTTTTCGAAGTTTTGGCAGACATCCGAAAATTCG
CTTTCGATTACGTCATCTTCCAACTGCAACCAAATGAGGAAATTTTGATC
GCTGAGAAGTTTTTGAGGGGTCAAAGTCAAGCTGCAGGTCAGTGTGACGG
GACGCCAGCCAACTTTCATGCTGTTAAGGAGTTCATCCGAGCAAATCCAG
ATGAGGGCGTTATTGCAGTTTTCCATTTGAAAGGGCGTACCGTTGCTTTA
AACTGATGGAGTCCTGACTCGTTTTGCCTAGCAGACCAATTGGACCATCT
TTCAGCGTTCCACAAACTGAGCATCAAACTTCCAACAGCAAAGAGAATCG
ATCTTCACTATCTGGAAGATGTCGATTATAAAACACTTTCACAATTCGTT
GAATAAGTTAAAATGACATTTGAAGTTTTCGAAGTTTTGGCAGACATCCG
AAAATTCGCTTTCGATTACGTCATCTTCCAACTGCAACCAAATGAGGAAA
TTTTGATCGCTGAGAAGTTTTTGAGGGGTCAAAGTCAAGCTGCAGGTCAG
TGTGACGGGACGCCAGCCAACTTTCATGCTGTTAAGGAGTTCATCCGAGC
AAATCCAGATGAGGGCGTTATTGCAGTTTTCCATTTGAAAGGGCGTACCG
TTGCTTTAAACTGATGGAGTCCTGACTCGTTTTGCCTAGCAGACCAATTG
GACCATCTTTCAGCGTTCCACAAACTGAGCATCAAACTTCCAACAGCAAA
GAGAATCGATCTTCACTATCTGGAAGATGTCGATTATAAAACACTTTCAC
AATTCGTTGAATAAGTTAAAATGACATTTGAAGTTTTCGAAGTTTTGGCA
GACATCCGAAAATTCGCTTTCGATTACGTCATCTTCCAACTGCAACCAAA
TGAGGAAATTTTGATCGCTGAGAAGTTTTTGAGGGGTCAAAGTCAAGCTG
CAGGTCAGTGTGACGGGACGCCAGCCAACTTTCATGCTGTTAAGGAGTTC
ATCCGAGCAAATCCAGATGAGGGCGTTATTGCAGTTTTCCATTTGAAAGG
GCGTACCGTTGCTTTAAACTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064776-exon-scaffold_423-1575043694:273423..273540 | TCONS_00064776-exon-scaffold_423-1575043694:273423..273540 | Clytia hemisphaerica | exon |
| TCONS_00064776-exon-scaffold_423-1575043694:272948..273204 | TCONS_00064776-exon-scaffold_423-1575043694:272948..273204 | Clytia hemisphaerica | exon |
| TCONS_00064776-exon-scaffold_423-1575043694:272474..272621 | TCONS_00064776-exon-scaffold_423-1575043694:272474..272621 | Clytia hemisphaerica | exon |
| TCONS_00064776-exon-scaffold_423-1510915933:273423..273540 | TCONS_00064776-exon-scaffold_423-1510915933:273423..273540 | Clytia hemisphaerica | exon |
| TCONS_00064776-exon-scaffold_423-1510915933:272948..273204 | TCONS_00064776-exon-scaffold_423-1510915933:272948..273204 | Clytia hemisphaerica | exon |
| TCONS_00064776-exon-scaffold_423-1510915933:272474..272621 | TCONS_00064776-exon-scaffold_423-1510915933:272474..272621 | Clytia hemisphaerica | exon |
| TCONS_00064776-exon-scaffold_423-1491911889:273423..273540 | TCONS_00064776-exon-scaffold_423-1491911889:273423..273540 | Clytia hemisphaerica | exon |
| TCONS_00064776-exon-scaffold_423-1491911889:272948..273204 | TCONS_00064776-exon-scaffold_423-1491911889:272948..273204 | Clytia hemisphaerica | exon |
| TCONS_00064776-exon-scaffold_423-1491911889:272474..272621 | TCONS_00064776-exon-scaffold_423-1491911889:272474..272621 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_423 | supercontig | scaffold_423:272474..273540 - |
Blast
The following BLAST results are available for this feature:
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