|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064771 ID=TCONS_00064771|Name=TCONS_00064771|organism=Clytia hemisphaerica|type=transcript|length=1707bp
GACCACTTGTCTCTGTTTATTTTTCCACTATCAATCCAATGCCAAGTAAA
ATAGTCTCATCTCACATAAGTTTTTTTCTTGCTCTACTGATTTGTGTGAT
GTGGTGATCATCTAATGAAGTGATAACTCATTTTTGGACTCTGTCTTTTA
GTTTTGTAAAGTCTATTCtctgtgttttcattttaataGTTGAAGGCTTC
ACACTTCTTGACTATAAATTACATTTTTATATTGCTCTCTAGAGCTAAAA
CAGTTTGACATTATGGTTGTTGGtgaaatgattgagaaatttcGGAAAAC
ATCTATCGAGAAGATTCGGAAGACATCAGTAGAGAAACTGGAACGACTTC
GGAAGACTTCGCGCGGACGAAGTAACCGCCGTACATCACGAGGAGAGTCA
TGTTCATGTATTGAATATNCTAATATATTCAATTCCAAGAGGAAAGAATA
TTTTATAACATGTTATTTTTACTTCACAGTATGAGAAGATACAACTATTT
TTACGGAAGTTatgaaaagtgacgaatttttcgtAATTAATGACAACGGA
AAGTCATTAAAGCTGTTAATTAGACAACTTTGTATGGAAATTACCTAATC
AAACCAATATCTTCTTCTTCACTGAAACGAAGAGCATCGTAAAGTGAGAG
CTAAAACAGTTTGAAATTATGGTTGTTGGtgaaatgattgagaaatttcG
GAAAACATCTATCGAGAAGATTCGGAAGACATCAGTAGAGAAACTGGAAC
GACTTCGGAAGACTTCGCGCGGACGAAGTAACCGCCGTACATCACGAGGA
GAGTCATGTTCATGTATTGAATATCGTGGGACGTTCAAGTTGATGGTGCT
TGGAGATCAAGGTGTGGGGAAAAGTTCAATTTGTGCCAAATACACCTCAG
TGGATGAAGAAATATTACAAGCATTTGATGAAGAGAGTGGAGAGAGGCAG
CCCCGCGACGAACTCTTTACAAGCTGTATTTATTTGAGTTCTGTTAACAG
GAAAATTAAGCAATACGATTTGGAAATCGCTATTCCGAATGGAGTTTATT
GGAATGGAACAGTCAACGGATACAAAGAAAGAATCAGTCAGACGAACGGC
TTCATGTTGGTTTACTCAAAAGAAAATCGGCAAAGTTACATGAGGCTAAT
CGAACTTTTATCAGAcattagaaaaatcaaaaagatggCCGAGCTTCCAA
TCATCATTGTTGGTAATAAATCAGACTTGAATGATATTAAAACATTGCAA
GTGAAAGATTGTGAGCATATAGTTTTGGGTGAATATCCACACTTTGATGT
ATCTGCAATGCAAAATGAAGGTATCCAAGAAGCTTTCAAACAACTTTCAG
TCAACTGTTCGCACGTgtttgatgaagatgaagaaactATTGAAGAGACT
GGGGAAGAGAATGTCAAAGAAATAGACTGATCAAATTGATCGTCGGTTGc
cgtaaaaaaattaatcgactGGACGCTTAAAAAGAAAGCATTACAAAGTC
AAAGTAACATTTTTGTCTGAGCCCTGAAAAATTTATGGATTGTCGGAGAG
GGAATGCAACAGTTTCTATTTTTAATTGTCGATATTGAATAAATAATTAA
TAGttgtagcacttttctacaagatcttcatttttttcttcttcattttc
atcttcatttttagaattttttaaaagatatttttatttcaaattgttcc
acttcac Run BLAST on NCBI transcript from alignment at scaffold_423:195376..197563- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064771 ID=TCONS_00064771|Name=TCONS_00064771|organism=Clytia hemisphaerica|type=transcript|length=2188bp|location=Sequence derived from alignment at scaffold_423:195376..197563- (Clytia hemisphaerica)
GACCACTTGTCTCTGTTTATTTTTCCACTATCAATCCAATGCCAAGTAAA
ATAGTCTCATCTCACATAAGTTTTTTTCTTGCTCTACTGATTTGTGTGAT
GTGGTGATCATCTAATGAAGTGATAACTCATTTTTGGACTCTGTCTTTTA
GTTTTGTAAAGTCTATTCTCTGTGTTTTCATTTTAATAGTTGAAGGCTTC
ACACTTCTTGACTATAAATTACATTTTTATATTGCTCTCTAGAGCTAAAA
CAGTTTGACATTATGGTTGTTGGTGAAATGATTGAGAAATTTCGGAAAAC
ATCTATCGAGAAGATTCGGAAGACATCAGTAGAGAAACTGGAACGACTTC
GGAAGACTTCGCGCGGACGAAGTAACCGCCGTACATCACGAGGAGAGTCA
TGTTCATGTATTGAATATNCTAATATATTCAATTCCAAGAGGAAAGAATA
TTTTATAACATGTTATTTTTACTTCACAGTATGAGAAGATACAACTATTT
TTACGGAAGTTATGAAAAGTGACGAATTTTTCGTAATTAATGACAACGGA
AAGTCATTAAAGCTGTTAATTAGACAACTTTGTATGGAAATTACCTAATC
AAACCAATATCTTCTTCTTCACTGAAACGAAGAGCATCGTAAAGTGAGGT
TTGTAGTTAATTCTTTTTTCTAACCTTGTCAAATGGCGTTTTAAGCTGCA
TGAACAAAAATTGGATGGATATCAATTTTTCATGATACAATCTGTTTCTC
GTTTTTGAAGTTCAAAATAACTCCTCTAGATTTGAAATTTCACTAAGGAA
AATTAAGCTTATTGTCAGAAACTCTTGATTTGTCGACTTGTATTTGAAAG
CAGGATGTAAACTATCACAAACTATGATGTCATTTTTGACCACTTGTCTC
TGTTTATTTTTCCACTATCAATCCAATGCCAAGTAAAATAGTATCATCTC
TCGTAACTTTTTTTCTTGCTCTACTGATTTGTGTGATGTGGTGATCATCT
AATGAAGTGATAACTCATTTTTGGACTCTATCTTTTAGTTTCGTAAAGTC
TATTCTCTGTGTTTTCATTTTAATAGTTGAAGGCTTCATACTTCTTGACT
ATAAATTACATTTTTATATTGCTCTCTAGAGCTAAAACAGTTTGAAATTA
TGGTTGTTGGTGAAATGATTGAGAAATTTCGGAAAACATCTATCGAGAAG
ATTCGGAAGACATCAGTAGAGAAACTGGAACGACTTCGGAAGACTTCGCG
CGGACGAAGTAACCGCCGTACATCACGAGGAGAGTCATGTTCATGTATTG
AATATCGTGGGACGTTCAAGTTGATGGTGCTTGGAGATCAAGGTGTGGGG
AAAAGTTCAATTTGTGCCAAATACACCTCAGTGGATGAAGAAATATTACA
AGCATTTGATGAAGAGAGTGGAGAGAGGCAGCCCCGCGACGAACTCTTTA
CAAGCTGTATTTATTTGAGTTCTGTTAACAGGAAAATTAAGCAATACGAT
TTGGAAATCGCTATTCCGAATGGAGTTTATTGGAATGGAACAGTCAACGG
ATACAAAGAAAGAATCAGTCAGACGAACGGCTTCATGTTGGTTTACTCAA
AAGAAAATCGGCAAAGTTACATGAGGCTAATCGAACTTTTATCAGACATT
AGAAAAATCAAAAAGATGGCCGAGCTTCCAATCATCATTGTTGGTAATAA
ATCAGACTTGAATGATATTAAAACATTGCAAGTGAAAGATTGTGAGCATA
TAGTTTTGGGTGAATATCCACACTTTGATGTATCTGCAATGCAAAATGAA
GGTATCCAAGAAGCTTTCAAACAACTTTCAGTCAACTGTTCGCACGTGTT
TGATGAAGATGAAGAAACTATTGAAGAGACTGGGGAAGAGAATGTCAAAG
AAATAGACTGATCAAATTGATCGTCGGTTGCCGTAAAAAAATTAATCGAC
TGGACGCTTAAAAAGAAAGCATTACAAAGTCAAAGTAACATTTTTGTCTG
AGCCCTGAAAAATTTATGGATTGTCGGAGAGGGAATGCAACAGTTTCTAT
TTTTAATTGTCGATATTGAATAAATAATTAATAGTTGTAGCACTTTTCTA
CAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTCATTTTTAGAATTT
TTTAAAAGATATTTTTATTTCAAATTGTTCCACTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064771-exon-scaffold_423-1575043694:196916..197563 | TCONS_00064771-exon-scaffold_423-1575043694:196916..197563 | Clytia hemisphaerica | exon |
| TCONS_00064771-exon-scaffold_423-1575043694:195376..196434 | TCONS_00064771-exon-scaffold_423-1575043694:195376..196434 | Clytia hemisphaerica | exon |
| TCONS_00064771-exon-scaffold_423-1510915933:196916..197563 | TCONS_00064771-exon-scaffold_423-1510915933:196916..197563 | Clytia hemisphaerica | exon |
| TCONS_00064771-exon-scaffold_423-1510915933:195376..196434 | TCONS_00064771-exon-scaffold_423-1510915933:195376..196434 | Clytia hemisphaerica | exon |
| TCONS_00064771-exon-scaffold_423-1491911889:196916..197563 | TCONS_00064771-exon-scaffold_423-1491911889:196916..197563 | Clytia hemisphaerica | exon |
| TCONS_00064771-exon-scaffold_423-1491911889:195376..196434 | TCONS_00064771-exon-scaffold_423-1491911889:195376..196434 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_423 | supercontig | scaffold_423:195376..197563 - |
Blast
The following BLAST results are available for this feature:
|
