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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064769 ID=TCONS_00064769|Name=TCONS_00064769|organism=Clytia hemisphaerica|type=transcript|length=1692bp
Agtctgaaaaaataaacaaatgaaaaacacttgaaattgaaatttcaaaa
aaaaataatggcATCAAACAAGGTTGCTGAGTTTGCACATGCTGTGAAAG
AGCGATTTAGTCATGAAGATTGGTCAGCAATCAATCTAATGACTCTGGTG
TCATGGACAGCCTCTGGTGCAATGATCTTTGGTGGCGTGGTACCCTACAT
ACCTCAATATTATGATATTTATATTTCTAAAGACACTGAAGGATTTTCTA
CGTATGTTTGTCTGGCTTTACTGGTTGCAAACATCCTGAGGATATTATTT
TGatttcgaTATGAATCATTTTTGGAATTGGACACATTTCAATGAttatt
tgaaatcaataatTCTTTTCTCACTATTTGGATGTATTATAACCTTCTGT
TTTGCCAACTACCCGGTTTATTTGGAAACCCTGGGTTTTGTTTCAGTTTT
CACGGAAGCCATGCTCGGTGCTCCACAATTTTAtcggaatttcaaaaata
aatccaCAACTGGCATGAGCGTTAAAATGGTTGGCATGTGGTTTTGTGGT
GACACATTCAAAACGGGATATTTTGTGATCAAGAATGCTCCCGTTCAATT
CGGTATATGTGGTTTGCTGCAAGTGACTATTGACATGTCAATTCTGTACC
AAGTCTTTCATTATGGACGGAAAAGGACGACCAAAGACTAAGAGATAATT
GTGtagagaaaaaagattttttattttttatggaCTGTTCTGTTGACTTG
TACAAACTTGATTATATGGTGTGCTGGTGAAGCATTGTCTTTTTTCATAA
CAAAAGGTCTTCCAGGTTTTGACAAAGTCATGTAACTTATGTTTGGGAAG
TGACATTGTTAAGGGAAATATTCGAGTTGAAAAGGCGAACCTTTAAACAA
ATCGAATGCTTTCTTCGATTGATAGTAAGTCACATTAATAGTGATGATTG
ATTAGGGGTTTCCTTCATCTGAAAATTAAAGTGaaggtggacgaactaaa
accaaatttttacaaatgagatggagtttttataatatactttaataatt
ggtcatttgaagtaaatAAATGACGCGTTCTTAAAAAAAGTACTGCTACT
TTTACTGCTACTGgttaacaaccaaccaaatcaaataagagcttgtaaaa
actccatctcgtccaaATTTTTATGCCCTTGCAGAATAATTTTAACCCCC
TTGAAAATTAAATAAGGTTCCTAGAAAAAAGAttccaaaaaacttttcat
tttacccttagaaaatgataaaaatttccATAGACCCCCAGGGGGTCTAC
TTTGACGTAGCTTTTGATaaatttatgataaaataaatctttttttaggT
TTGTTAATATTTATACGAAAGAAATGCAAGTAACagcatttcttttattt
ttctaaatgcAATCATAATATataatttaaaactttattgTAAACGTAAT
ATTTTAAATGATAGCGAGCTAACATTTTGATCGGTTGAAAtgcttgaaat
tctttttgcaacaaaaatttcaatttttcgaaattcttttGCTCAAAGAA
TATTCAAATTTCAAGAGgtatataccgggtgacccacgaaaaagttcaga
cgtttcccgacgttttgaggccgaacaaatgtcccaaagtgcttggagtt
ttgatatttagaaagtagatatcctaacttaaaatttgagcc Run BLAST on NCBI protein sequence of TCONS_00064769-protein >TCONS_00064769-protein ID=TCONS_00064769-protein|Name=TCONS_00064769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MNHFWNWTHFNDYLKSIILFSLFGCIITFCFANYPVYLETLGFVSVFTEA
MLGAPQFYRNFKNKSTTGMSVKMVGMWFCGDTFKTGYFVIKNAPVQFGIC
GLLQVTIDMSILYQVFHYGRKRTTKD Run BLAST on NCBI transcript from alignment at scaffold_423:149862..154863- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064769 ID=TCONS_00064769|Name=TCONS_00064769|organism=Clytia hemisphaerica|type=transcript|length=5002bp|location=Sequence derived from alignment at scaffold_423:149862..154863- (Clytia hemisphaerica)
AGTCTGAAAAAATAAACAAATGAAAAACACTTGAAATTGAAATTTCAAAA
AAAAATAATGGCATCAAACAAGGTTGCTGAGTTTGCACATGCTGTGAAAG
AGCGATTTAGTCATGAAGATTGGTCAGCAATCAATCTAATGACTCTGGTG
TCATGGACAGCCTCTGGTGCAATGATCTTTGGTGGCGTGGTACCCTACAT
ACCTCAATATTATGATATTTATATTTCTAAAGACACTGAAGGATTTTCTA
CGTATGTTTGTCTGGCTTTACTGGTTGCAAACATCCTGAGGATATTATTT
TGGTGAGTATAGGAATTTTTATAAGAATAAACCATATGAAAACGAAGGCT
CTGATGGCCAAAATATGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGAGCACAAAAAATGCTTTTTTAAACACTTTTTTCCACCGAA
AAATAAATAACTTTTATAGACTTACATTCCCCAAACGTTGAAGAAGCCTC
TACTAATTAAAGTAAATGAGATAAGATAAGATAAAACCTTAAAATCCATT
AGAATTTACAGCCTTTTGTCCAAAGTAAAAGACGTGCTTTTCTCGCTGCC
ATTTTGTTTTAGAATGAGAATTATTTTCGGTTCCAGTTCACACGGTCTTT
TTTCATACAATCAGATCGCGCAATTTCACTTTCGCTAGTCCAATAAGACT
GCAGGATTTGAGTCATGTGACATCTCTATTGAAAAACATGCGCGGAATAT
TTAAAATAGAAATACAATTAAAAGCAAACAATTAAGGCCAATATGTTTGG
TTTTTCTGAAGGGAAAAAAGGTATAGGAAGCTTTACTGAAGGAGGGATAA
GGCTGCCTGGGACTATCTATATCGTAGTCGTCTAAGAAAACAGCTTTTTT
TTTTAGAATCTTCCTTACAATCTAGTTTTTATATTTATAAAAAGTAGATT
GCTGACGTGTGGAAAGGAATTTTTTTTTGGAAAAAAACATTTGGCAATTC
ATAAATGTTTTCTATCATTCATAATGTCATTTTTGGATCATTTTAGTCTG
AAAAAATAAACAAATGAAAAACACTTGAAATTGAAATTTCAAAAAAAAAT
AATGGCATCAAACAAGGTTGCTGAGTTTGCACATGCTGTGAAAGAGCGAT
TTAGTCATGAAGATTGGTCAGCAATCAATCTAATGACTCTGGTGTCATGG
ACAGCCTCTGGTGCAATGATCTTTGGTGGCGTGGTACCCTACATACCTCA
ATATTATGATATTTATATTTCTAAAGACACTGAAGGATTTTCTACGTATG
TTTGTCTGGCTTTACTGGTTGCAAACATCCTGAGGATATTATTTTGGTGA
GTATAGGAATTTTTATAAGAATAAACCATATGAAAACGAAGGCTCTGATG
GCCAAAATATGAAGGACATTCAATTTTTGGGAACTCTTTAAACATCTTAT
TTTCATTAATTTACATGAAAATTATATCTAAAGTAAGAACATTTTAGGCT
TAAAACCAGGGGGTCAAGCAGTTGATCCAAAACACTATGCCTGTTTTGAA
ATTTTCAAATTTCTATAAATACAGTTAATCCAAGAGTGGATTAAACAGTT
AATCCAAGAGTGGATTAACTGCCAAAGGGTTGGTCTCTGCTCAGGTAAGT
AATGGCATGTCTCAAAAACCTGAAAATTACCATAATTTTTGAAGGCCATT
TTCGACACTTTTTGGTTTTTGCGGTTTTTCGCGAAAATAAGGGCGTGAAC
AATTAGGTAACACCCCTACAGCGAAACTTCATCATGGTATCCTTCGTTGC
AAATCATTGGTTTCCTCATATTCTGCCGGCTAATGGTCTTCAAAAACTAT
GGTAATTTTCAGGTTTTTGAGACATGCCATAACTTACCTGAGTGAAAAAA
TTCTGGGAAAAATTTGGACTTTAACTGCTTTATAATGTCATTCTGTAAAA
TTCATTTATTATGATTCGTGCTAGTTTTGCCTCTTCTTCTGTCTTTAAAA
TGTCAAACTGCATCAACAAAGTCTTGCTTCTACATCGTTGGGGACACTTA
AAGGCTGGGTAGGACTGGGCCTGAACCACAAGNCAGTTTTCTGGTGATGG
TTAAGTGACTTTAGCAACTCTGTTCTTTTGTGTAGTATTTTCTTTTTGTT
GGAGGTTGAAATGTTTTCCCCAGTTGGAATGCTAAAGATCAGTGCAATTT
AGGAGAGTGTTTAGGCGAGATAAACCAGGCACTTGGAAAAATGCTGTGTG
ACTGAACTCATTTTGAAACTAATTGTTCTTTATTTTTCAAACGTTTTCCT
TCCGGGCCTATTGAATGTTTTTTTTATTAGCTAGTTCCTTAATTATATGA
ATTTTTCTTCTCTTTTTTTTCAGATTTCGATATGAATCATTTTTGGAATT
GGACACATTTCAATGATTATTTGAAATCAATAATTCTTTTCTCACTATTT
GGATGTATTATAACCTTCTGTTTTGCCAACTACCCGGTTTATTTGGAAAC
CCTGGGTTTTGTTTCAGTTTTCACGGAAGCCATGCTCGGTGCTCCACAAT
TTTATCGGAATTTCAAAAATAAATCCACAACTGGCATGAGGTGAGTGTAT
TTCAATGATAATTTACAAATAGCCATGTCTAACAGCCTGTATTTTTATAT
AACTAGTAAATTCTCTGCTGAGGCCCGCTTGTTTTAACTATTTTGGTATT
TGAACCTCAAATTTGTTGTCCCCCCTTCCTCCCAGACTCAGGATTGTTCT
TAATTTTATTCTTATTTTTGACATTTTTTTAACCTTGTTATTTTTATAAG
ATTCATTCTTATATAGAAAAGAAAATTAGTAATTATCTTTATTTGGTGGT
CCTCAGTGGAGTTTAAGTCAGAGAGAGTCCCTTTTCTATTTACGTAAAAC
GTTCCTTAGTCAAAGGTATGAAAAAAGTTGATTCCTTGGAGATAGTGTGC
ATGATAAAAGAGGTGAACTACTGGAATATGTATGATATTCTACGAGTGAC
AATGACCCGGTCATTTTCTTCCCTTTTAGCGTTAAAATGGTTGGCATGTG
GTTTTGTGGTGACACATTCAAAACGGGATATTTTGTGATCAAGAATGCTC
CCGTTCAATTCGGTATATGTGGTTTGCTGCAAGTGACTATTGACATGTCA
ATTCTGTACCAAGTCTTTCATTATGGACGGAAAAGGACGACCAAAGACTA
AGAGATAATTGTGTAGAGAAAAAAGATTTTTTATTTTTTATGGACTGTTC
TGTTGACTTGTACAAACTTGATTATATGGTGTGCTGGTGAAGCATTGTCT
TTTTTCATAACAAAAGGTCTTCCAGGTTTTGACAAAGTCATGTAACTTAT
GTTTGGGAAGTGACATTGTTAAGGGAAATATTCGAGTTGAAAAGGCGAAC
CTTTAAACAAATCGAATGCTTTCTTCGATTGATAGTAAGTCACATTAATA
GTGATGATTGATTAGGGGTTTCCTTCATCTGAAAATTAAAGTGAAGGTGG
ACGAACTAAAACCAAATTTTTACAAATGAGATGGAGTTTTTATAATATAC
TTTAATAATTGGTCATTTGAAGTAAATAAATGACGCGTTCTTAAAAAAAG
TACTGCTACTTTTACTGCTACTGGTTAACAACCAACCAAATCAAATAAGA
GCTTGTAAAAACTCCATCTCGTCCAAATTTTTATGCCCTTGCAGAATAAT
TTTAACCCCCTTGAAAATTAAATAAGGTTCCTAGAAAAAAGATTCCAAAA
AACTTTTCATTTTACCCTTAGAAAATGATAAAAATTTCCATAGACCCCCA
GGGGGTCTACTTTGACGTAGCTTTTGATAAATTTATGATAAAATAAATCT
TTTTTTAGGTTTGTTAATATTTATACGAAAGAAATGCAAGTAACAGCATT
TCTTTTATTTTTCTAAATGCAATCATAATATATAATTTAAAACTTTATTG
TAAACGTAATATTTTAAATGATAGCGAGCTAACATTTTGATCGGTTGAAA
TGCTTGAAATTCTTTTTGCAACAAAAATTTCAATTTTTCGAAATTCTTTT
GCTCAAAGAATATTCAAATTTCAAGAGGTATATACCGGGTGACCCACGAA
AAAGTTCAGACGTTTCCCGACGTTTTGAGGCCGAACAAATGTCCCAAAGT
GCTTGGAGTTTTGATATTTAGAAAGTAGATATCCTAACTTAAAATTTGAG
CC Coding sequence (CDS) from alignment at scaffold_423:149862..154863- >TCONS_00064769 ID=TCONS_00064769|Name=TCONS_00064769|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_423:149862..154863- (Clytia hemisphaerica)
CGTTAAAATGGTTGGCATGTGGTTTTGTGGTGACACATTCAAAACGGGAT
ATTTTGTGATCAAGAATGCTCCCGTTCAATTCGGTATATGTGGTTTGCTG
CAAGTGACTATTGACATGTCAATTCTGTACCAAGTCTTTCATTATGGACG
GAAAAGGACGACCAAAGACTAAATGAATCATTTTTGGAATTGGACACATT
TCAATGATTATTTGAAATCAATAATTCTTTTCTCACTATTTGGATGTATT
ATAACCTTCTGTTTTGCCAACTACCCGGTTTATTTGGAAACCCTGGGTTT
TGTTTCAGTTTTCACGGAAGCCATGCTCGGTGCTCCACAATTTTATCGGA
ATTTCAAAAATAAATCCACAACTGGCATGAGCGTTAAAATGGTTGGCATG
TGGTTTTGTGGTGACACATTCAAAACGGGATATTTTGTGATCAAGAATGC
TCCCGTTCAATTCGGTATATGTGGTTTGCTGCAAGTGACTATTGACATGT
CAATTCTGTACCAAGTCTTTCATTATGGACGGAAAAGGACGACCAAAGAC
TAAATGAATCATTTTTGGAATTGGACACATTTCAATGATTATTTGAAATC
AATAATTCTTTTCTCACTATTTGGATGTATTATAACCTTCTGTTTTGCCA
ACTACCCGGTTTATTTGGAAACCCTGGGTTTTGTTTCAGTTTTCACGGAA
GCCATGCTCGGTGCTCCACAATTTTATCGGAATTTCAAAAATAAATCCAC
AACTGGCATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064769-exon-scaffold_423-1575043694:154562..154863 | TCONS_00064769-exon-scaffold_423-1575043694:154562..154863 | Clytia hemisphaerica | exon |
| TCONS_00064769-exon-scaffold_423-1575043694:151474..151690 | TCONS_00064769-exon-scaffold_423-1575043694:151474..151690 | Clytia hemisphaerica | exon |
| TCONS_00064769-exon-scaffold_423-1575043694:149862..151034 | TCONS_00064769-exon-scaffold_423-1575043694:149862..151034 | Clytia hemisphaerica | exon |
| TCONS_00064769-exon-scaffold_423-1510915933:154562..154863 | TCONS_00064769-exon-scaffold_423-1510915933:154562..154863 | Clytia hemisphaerica | exon |
| TCONS_00064769-exon-scaffold_423-1510915933:151474..151690 | TCONS_00064769-exon-scaffold_423-1510915933:151474..151690 | Clytia hemisphaerica | exon |
| TCONS_00064769-exon-scaffold_423-1510915933:149862..151034 | TCONS_00064769-exon-scaffold_423-1510915933:149862..151034 | Clytia hemisphaerica | exon |
| TCONS_00064769-exon-scaffold_423-1491911889:154562..154863 | TCONS_00064769-exon-scaffold_423-1491911889:154562..154863 | Clytia hemisphaerica | exon |
| TCONS_00064769-exon-scaffold_423-1491911889:151474..151690 | TCONS_00064769-exon-scaffold_423-1491911889:151474..151690 | Clytia hemisphaerica | exon |
| TCONS_00064769-exon-scaffold_423-1491911889:149862..151034 | TCONS_00064769-exon-scaffold_423-1491911889:149862..151034 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_423 | supercontig | scaffold_423:149862..154863 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006603 | PQ-loop_rpt |
Blast
BLAST of TCONS_00064769 vs. Swiss-Prot (Human)
Match: PQLC1 (PQ-loop repeat-containing protein 1 OS=Homo sapiens GN=PQLC1 PE=1 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 8.158e-41 Identity = 63/125 (50.40%), Postives = 92/125 (73.60%), Query Frame = 2
Query: 296 YFDFDMNHFWNWTHFNDYLKSIILFSLFGCIITFCFANYPVYLETLGFVSVFTEAMLGAPQFYRNFKNKSTTGMSVKMVGMWFCGDTFKTGYFVIKNAPVQFGICGLLQVTIDMSILYQVFHYGR 670
+ DFD +HFW W+ F+DY++ ++ F+ IT+ + +++ETLGF++V TEAMLG PQ YRN +++ST GMS+KMV MW GD FKT YF++K AP+QF +CGLLQV +D++IL Q + + R
Sbjct: 129 FLDFDPHHFWQWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLVDLAILGQAYAFAR 253 HSP 2 Score: 94.3597 bits (233), Expect = 3.487e-21 Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1
Query: 118 DWSAINLMTLVSWTASGAMIFGGVVPYIPQYYDIYISKDTEGFSTYVCLALLVANILRILF*F--RYESFL 324
DW + L LVSW A+ AM+FGGVVPY+PQY DI +++ +GFSTYVCL LLVANILRILF F R+ES L
Sbjct: 7 DWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVANILRILFWFGRRFESPL 77
The following BLAST results are available for this feature:
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