TCONS_00064768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064768
Unique NameTCONS_00064768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064768 ID=TCONS_00064768|Name=TCONS_00064768|organism=Clytia hemisphaerica|type=transcript|length=1692bp
Agtctgaaaaaataaacaaatgaaaaacacttgaaattgaaatttcaaaa
aaaaataatggcATCAAACAAGGTTGCTGAGTTTGCACATGCTGTGAAAG
AGCGATTTAGTCATGAAGATTGGTCAGCAATCAATCTAATGACTCTGGTG
TCATGGACAGCCTCTGGTGCAATGATCTTTGGTGGCGTGGTACCCTACAT
ACCTCAATATTATGATATTTATATTTCTAAAGACACTGAAGGATTTTCTA
CGTATGTTTGTCTGGCTTTACTGGTTGCAAACATCCTGAGGATATTATTT
TGatttcgaTATGAATCATTTTTGGAATTGGACACATTTCAATGAttatt
tgaaatcaataatTCTTTTCTCACTATTTGGATGTATTATAACCTTCTGT
TTTGCCAACTACCCGGTTTATTTGGAAACCCTGGGTTTTGTTTCAGTTTT
CACGGAAGCCATGCTCGGTGCTCCACAATTTTAtcggaatttcaaaaata
aatccaCAACTGGCATGAGCGTTAAAATGGTTGGCATGTGGTTTTGTGGT
GACACATTCAAAACGGGATATTTTGTGATCAAGAATGCTCCCGTTCAATT
CGGTATATGTGGTTTGCTGCAAGTGACTATTGACATGTCAATTCTGTACC
AAGTCTTTCATTATGGACGGAAAAGGACGACCAAAGACTAAGAGATAATT
GTGtagagaaaaaagattttttattttttatggaCTGTTCTGTTGACTTG
TACAAACTTGATTATATGGTGTGCTGGTGAAGCATTGTCTTTTTTCATAA
CAAAAGGTCTTCCAGGTTTTGACAAAGTCATGTAACTTATGTTTGGGAAG
TGACATTGTTAAGGGAAATATTCGAGTTGAAAAGGCGAACCTTTAAACAA
ATCGAATGCTTTCTTCGATTGATAGTAAGTCACATTAATAGTGATGATTG
ATTAGGGGTTTCCTTCATCTGAAAATTAAAGTGaaggtggacgaactaaa
accaaatttttacaaatgagatggagtttttataatatactttaataatt
ggtcatttgaagtaaatAAATGACGCGTTCTTAAAAAAAGTACTGCTACT
TTTACTGCTACTGgttaacaaccaaccaaatcaaataagagcttgtaaaa
actccatctcgtccaaATTTTTATGCCCTTGCAGAATAATTTTAACCCCC
TTGAAAATTAAATAAGGTTCCTAGAAAAAAGAttccaaaaaacttttcat
tttacccttagaaaatgataaaaatttccATAGACCCCCAGGGGGTCTAC
TTTGACGTAGCTTTTGATaaatttatgataaaataaatctttttttaggT
TTGTTAATATTTATACGAAAGAAATGCAAGTAACagcatttcttttattt
ttctaaatgcAATCATAATATataatttaaaactttattgTAAACGTAAT
ATTTTAAATGATAGCGAGCTAACATTTTGATCGGTTGAAAtgcttgaaat
tctttttgcaacaaaaatttcaatttttcgaaattcttttGCTCAAAGAA
TATTCAAATTTCAAGAGgtatataccgggtgacccacgaaaaagttcaga
cgtttcccgacgttttgaggccgaacaaatgtcccaaagtgcttggagtt
ttgatatttagaaagtagatatcctaacttaaaatttgagcc
Run BLAST on NCBI

transcript from alignment at scaffold_423:149862..153019-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064768 ID=TCONS_00064768|Name=TCONS_00064768|organism=Clytia hemisphaerica|type=transcript|length=3158bp|location=Sequence derived from alignment at scaffold_423:149862..153019- (Clytia hemisphaerica)
AGTCTGAAAAAATAAACAAATGAAAAACACTTGAAATTGAAATTTCAAAA
AAAAATAATGGCATCAAACAAGGTTGCTGAGTTTGCACATGCTGTGAAAG
AGCGATTTAGTCATGAAGATTGGTCAGCAATCAATCTAATGACTCTGGTG
TCATGGACAGCCTCTGGTGCAATGATCTTTGGTGGCGTGGTACCCTACAT
ACCTCAATATTATGATATTTATATTTCTAAAGACACTGAAGGATTTTCTA
CGTATGTTTGTCTGGCTTTACTGGTTGCAAACATCCTGAGGATATTATTT
TGGTGAGTATAGGAATTTTTATAAGAATAAACCATATGAAAACGAAGGCT
CTGATGGCCAAAATATGAAGGACATTCAATTTTTGGGAACTCTTTAAACA
TCTTATTTTCATTAATTTACATGAAAATTATATCTAAAGTAAGAACATTT
TAGGCTTAAAACCAGGGGGTCAAGCAGTTGATCCAAAACACTATGCCTGT
TTTGAAATTTTCAAATTTCTATAAATACAGTTAATCCAAGAGTGGATTAA
ACAGTTAATCCAAGAGTGGATTAACTGCCAAAGGGTTGGTCTCTGCTCAG
GTAAGTAATGGCATGTCTCAAAAACCTGAAAATTACCATAATTTTTGAAG
GCCATTTTCGACACTTTTTGGTTTTTGCGGTTTTTCGCGAAAATAAGGGC
GTGAACAATTAGGTAACACCCCTACAGCGAAACTTCATCATGGTATCCTT
CGTTGCAAATCATTGGTTTCCTCATATTCTGCCGGCTAATGGTCTTCAAA
AACTATGGTAATTTTCAGGTTTTTGAGACATGCCATAACTTACCTGAGTG
AAAAAATTCTGGGAAAAATTTGGACTTTAACTGCTTTATAATGTCATTCT
GTAAAATTCATTTATTATGATTCGTGCTAGTTTTGCCTCTTCTTCTGTCT
TTAAAATGTCAAACTGCATCAACAAAGTCTTGCTTCTACATCGTTGGGGA
CACTTAAAGGCTGGGTAGGACTGGGCCTGAACCACAAGNCAGTTTTCTGG
TGATGGTTAAGTGACTTTAGCAACTCTGTTCTTTTGTGTAGTATTTTCTT
TTTGTTGGAGGTTGAAATGTTTTCCCCAGTTGGAATGCTAAAGATCAGTG
CAATTTAGGAGAGTGTTTAGGCGAGATAAACCAGGCACTTGGAAAAATGC
TGTGTGACTGAACTCATTTTGAAACTAATTGTTCTTTATTTTTCAAACGT
TTTCCTTCCGGGCCTATTGAATGTTTTTTTTATTAGCTAGTTCCTTAATT
ATATGAATTTTTCTTCTCTTTTTTTTCAGATTTCGATATGAATCATTTTT
GGAATTGGACACATTTCAATGATTATTTGAAATCAATAATTCTTTTCTCA
CTATTTGGATGTATTATAACCTTCTGTTTTGCCAACTACCCGGTTTATTT
GGAAACCCTGGGTTTTGTTTCAGTTTTCACGGAAGCCATGCTCGGTGCTC
CACAATTTTATCGGAATTTCAAAAATAAATCCACAACTGGCATGAGGTGA
GTGTATTTCAATGATAATTTACAAATAGCCATGTCTAACAGCCTGTATTT
TTATATAACTAGTAAATTCTCTGCTGAGGCCCGCTTGTTTTAACTATTTT
GGTATTTGAACCTCAAATTTGTTGTCCCCCCTTCCTCCCAGACTCAGGAT
TGTTCTTAATTTTATTCTTATTTTTGACATTTTTTTAACCTTGTTATTTT
TATAAGATTCATTCTTATATAGAAAAGAAAATTAGTAATTATCTTTATTT
GGTGGTCCTCAGTGGAGTTTAAGTCAGAGAGAGTCCCTTTTCTATTTACG
TAAAACGTTCCTTAGTCAAAGGTATGAAAAAAGTTGATTCCTTGGAGATA
GTGTGCATGATAAAAGAGGTGAACTACTGGAATATGTATGATATTCTACG
AGTGACAATGACCCGGTCATTTTCTTCCCTTTTAGCGTTAAAATGGTTGG
CATGTGGTTTTGTGGTGACACATTCAAAACGGGATATTTTGTGATCAAGA
ATGCTCCCGTTCAATTCGGTATATGTGGTTTGCTGCAAGTGACTATTGAC
ATGTCAATTCTGTACCAAGTCTTTCATTATGGACGGAAAAGGACGACCAA
AGACTAAGAGATAATTGTGTAGAGAAAAAAGATTTTTTATTTTTTATGGA
CTGTTCTGTTGACTTGTACAAACTTGATTATATGGTGTGCTGGTGAAGCA
TTGTCTTTTTTCATAACAAAAGGTCTTCCAGGTTTTGACAAAGTCATGTA
ACTTATGTTTGGGAAGTGACATTGTTAAGGGAAATATTCGAGTTGAAAAG
GCGAACCTTTAAACAAATCGAATGCTTTCTTCGATTGATAGTAAGTCACA
TTAATAGTGATGATTGATTAGGGGTTTCCTTCATCTGAAAATTAAAGTGA
AGGTGGACGAACTAAAACCAAATTTTTACAAATGAGATGGAGTTTTTATA
ATATACTTTAATAATTGGTCATTTGAAGTAAATAAATGACGCGTTCTTAA
AAAAAGTACTGCTACTTTTACTGCTACTGGTTAACAACCAACCAAATCAA
ATAAGAGCTTGTAAAAACTCCATCTCGTCCAAATTTTTATGCCCTTGCAG
AATAATTTTAACCCCCTTGAAAATTAAATAAGGTTCCTAGAAAAAAGATT
CCAAAAAACTTTTCATTTTACCCTTAGAAAATGATAAAAATTTCCATAGA
CCCCCAGGGGGTCTACTTTGACGTAGCTTTTGATAAATTTATGATAAAAT
AAATCTTTTTTTAGGTTTGTTAATATTTATACGAAAGAAATGCAAGTAAC
AGCATTTCTTTTATTTTTCTAAATGCAATCATAATATATAATTTAAAACT
TTATTGTAAACGTAATATTTTAAATGATAGCGAGCTAACATTTTGATCGG
TTGAAATGCTTGAAATTCTTTTTGCAACAAAAATTTCAATTTTTCGAAAT
TCTTTTGCTCAAAGAATATTCAAATTTCAAGAGGTATATACCGGGTGACC
CACGAAAAAGTTCAGACGTTTCCCGACGTTTTGAGGCCGAACAAATGTCC
CAAAGTGCTTGGAGTTTTGATATTTAGAAAGTAGATATCCTAACTTAAAA
TTTGAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040615XLOC_040615Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064768-exon-scaffold_423-1575043694:152718..153019TCONS_00064768-exon-scaffold_423-1575043694:152718..153019Clytia hemisphaericaexon
TCONS_00064768-exon-scaffold_423-1575043694:151474..151690TCONS_00064768-exon-scaffold_423-1575043694:151474..151690Clytia hemisphaericaexon
TCONS_00064768-exon-scaffold_423-1575043694:149862..151034TCONS_00064768-exon-scaffold_423-1575043694:149862..151034Clytia hemisphaericaexon
TCONS_00064768-exon-scaffold_423-1510915933:152718..153019TCONS_00064768-exon-scaffold_423-1510915933:152718..153019Clytia hemisphaericaexon
TCONS_00064768-exon-scaffold_423-1510915933:151474..151690TCONS_00064768-exon-scaffold_423-1510915933:151474..151690Clytia hemisphaericaexon
TCONS_00064768-exon-scaffold_423-1510915933:149862..151034TCONS_00064768-exon-scaffold_423-1510915933:149862..151034Clytia hemisphaericaexon
TCONS_00064768-exon-scaffold_423-1491911889:152718..153019TCONS_00064768-exon-scaffold_423-1491911889:152718..153019Clytia hemisphaericaexon
TCONS_00064768-exon-scaffold_423-1491911889:151474..151690TCONS_00064768-exon-scaffold_423-1491911889:151474..151690Clytia hemisphaericaexon
TCONS_00064768-exon-scaffold_423-1491911889:149862..151034TCONS_00064768-exon-scaffold_423-1491911889:149862..151034Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:149862..153019 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4285	1.19583	4.92388	5.84487	2.53471	2.03114	3.57284	3.44382	3.17678	3.34356	2.55322	2.57361	1.70305	1.43624	1.35739	1.40653	2.62977	2.96305	1.8198	2.42406	1.74406	1.84478	3.03684	2.6877	8.97672	6.94447	2.53256	1.68649	2.89932	2.54957
Blast
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BLAST of TCONS_00064768 vs. Swiss-Prot (Human)
Match: PQLC1 (PQ-loop repeat-containing protein 1 OS=Homo sapiens GN=PQLC1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.158e-41
Identity = 63/125 (50.40%), Postives = 92/125 (73.60%), Query Frame = 2 
Query:  296 YFDFDMNHFWNWTHFNDYLKSIILFSLFGCIITFCFANYPVYLETLGFVSVFTEAMLGAPQFYRNFKNKSTTGMSVKMVGMWFCGDTFKTGYFVIKNAPVQFGICGLLQVTIDMSILYQVFHYGR 670
            + DFD +HFW W+ F+DY++ ++ F+     IT+   +  +++ETLGF++V TEAMLG PQ YRN +++ST GMS+KMV MW  GD FKT YF++K AP+QF +CGLLQV +D++IL Q + + R
Sbjct:  129 FLDFDPHHFWQWSSFSDYVQCVLAFTGVAGYITYLSIDSALFVETLGFLAVLTEAMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLVDLAILGQAYAFAR 253

HSP 2 Score: 94.3597 bits (233), Expect = 3.487e-21
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:  118 DWSAINLMTLVSWTASGAMIFGGVVPYIPQYYDIYISKDTEGFSTYVCLALLVANILRILF*F--RYESFL 324
            DW  + L  LVSW A+ AM+FGGVVPY+PQY DI  +++ +GFSTYVCL LLVANILRILF F  R+ES L
Sbjct:    7 DWLLVPLHQLVSWGAAAAMVFGGVVPYVPQYRDIRRTQNADGFSTYVCLVLLVANILRILFWFGRRFESPL 77
The following BLAST results are available for this feature:
BLAST of TCONS_00064768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PQLC18.158e-4150.40PQ-loop repeat-containing protein 1 OS=Homo sapien... [more]
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