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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064767 ID=TCONS_00064767|Name=TCONS_00064767|organism=Clytia hemisphaerica|type=transcript|length=4454bpRun BLAST on NCBI protein sequence of TCONS_00064767-protein >TCONS_00064767-protein ID=TCONS_00064767-protein|Name=TCONS_00064767-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp MFLLEEVREHDTNKQWNPMFQMMHLETSQQIEHKTLKAAKAPQNRSLNRYRun BLAST on NCBI transcript from alignment at scaffold_423:19052..28335- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064767 ID=TCONS_00064767|Name=TCONS_00064767|organism=Clytia hemisphaerica|type=transcript|length=9284bp|location=Sequence derived from alignment at scaffold_423:19052..28335- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_423:19052..28335- >TCONS_00064767 ID=TCONS_00064767|Name=TCONS_00064767|organism=Clytia hemisphaerica|type=CDS|length=20052bp|location=Sequence derived from alignment at scaffold_423:19052..28335- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064767 vs. Swiss-Prot (Human)
Match: PTN2 (Tyrosine-protein phosphatase non-receptor type 2 OS=Homo sapiens GN=PTPN2 PE=1 SV=2) HSP 1 Score: 246.514 bits (628), Expect = 7.779e-71 Identity = 121/276 (43.84%), Postives = 175/276 (63.41%), Query Frame = 2
Query: 104 EVREHDTNKQWNPMFQMMHLETSQQIEHKTLKAAKAPQNRSLNRYRDVLPYDDTRVHLKTGNTDYINANYVEVSDVDRKYILAQGPLQNTSGDFWRMIWENDSTSVIMLCRIVEKQMIKCHPYWPMGEDEVV--EFGSFQIQNVQTVMKQHYVIRDLQLTYVLTGETKSIKQYHFMTWPDFGVPDDANSFVEFLNTLRKDDVFQ-NQRPPVIHCSAGIGRSGTLILVDAALKLCEDKNSPNSLDVRKMLLALRQFRCGLVQTPQQFRFAHLAILTG 922
E E DT ++W P++ LE + + AK P+NR+ NRYRDV PYD +RV L+ DYINA+ V++ + R YIL QGPL NT FW M+W+ + +V+ML RIVEK+ +KC YWP + E++ E G F ++ + +K +Y + LQL + +GET++I +H+ TWPDFGVP+ SF+ FL +R+ + P VIHCSAGIGRSGT LVD L L E + N ++++LL +R++R GL+QTP Q RF+++AI+ G
Sbjct: 8 EFEELDTQRRWQPLY----LEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVKLQNAENDYINASLVDIEEAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFKETG-FSVKLLSEDVKSYYTVHLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNFLFKVRESGSLNPDHGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDIN---IKQVLLNMRKYRMGLIQTPDQLRFSYMAIIEG 275 The following BLAST results are available for this feature:
BLAST of TCONS_00064767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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