TCONS_00064761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064761
Unique NameTCONS_00064761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064761 ID=TCONS_00064761|Name=TCONS_00064761|organism=Clytia hemisphaerica|type=transcript|length=618bp
CCCATTCAAATAACAAATCTATATATGCAAATTCTGAAGTGATATTGTTA
TTGTAATAAAATGGAAACTGTGTCAAATGGAAAGAGATTCTGCAAATGCA
AATCAATGTGCAGCAAAAAAGAAGGAAAGACAGGGAAAGGTGGCTGTCCT
TGTAAGACGAGGGGAGAGAACTGTAATGAATTATGTCAATGTGGAGTATG
GCGCAAGAAAGAACTTGTAGCTGGCTGCAAGAATGGAGGACCTACAATGA
CGCAAAACACAGTCCGCACCACAAAAACGaTCAACCTTAATCAACAAGCT
GGTGATGCCAACTCCAATCAAACTGTTCAAAATCGATCAGATGGCTTTAT
TTTGATGGAAGAGGAGTTGGAAATAGCAGAACGAAAAATTAGGGCCTTCT
TAGATTCATTGTCACGAGAGGACCTCATGGAGATGCTAATTGTGGCTAAT
AACCATGGGAATGGCTCCCTCCAAGCCTTGAAGGACAATCTTGCAAATAA
TCGCAAATTGGGTGGACATCCGAACACGTTCTTCTGTTAAGAGCTTTGTT
CAAATTATAAAGCGTGCCTTAAGTGCACTTGATAAAGAGGACAGAGAGGA
TGCCAGGAAGGAGACAGT
Run BLAST on NCBI

protein sequence of TCONS_00064761-protein

>TCONS_00064761-protein ID=TCONS_00064761-protein|Name=TCONS_00064761-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
METVSNGKRFCKCKSMCSKKEGKTGKGGCPCKTRGENCNELCQCGVWRKK
ELVAGCKNGGPTMTQNTVRTTKTINLNQQAGDANSNQTVQNRSDGFILME
EELEIAERKIRAFLDSLSREDLMEMLIVANNHGNGSLQALKDNLANNRKL
GGHPNTFFC
Run BLAST on NCBI

transcript from alignment at scaffold_423:454536..456468+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064761 ID=TCONS_00064761|Name=TCONS_00064761|organism=Clytia hemisphaerica|type=transcript|length=1933bp|location=Sequence derived from alignment at scaffold_423:454536..456468+ (Clytia hemisphaerica)
CCCATTCAAATAACAAATCTATATATGCAAATTCTGAAGTGATATTGTTA
TTGTAATAAAATGGAAACTGTGTCAAATGGAAAGGTACTTTCACTTTACT
TTgtattattttgatgtttttgacaAGAAGGGATTCTATAAAAAGTTGCT
GCTTTTATATAAAAGATCTGACCCCTTGCACTTGCTTTATTATGTGCAAA
TtgtcgtttttttattttctccctcacattgaattatttttgttcAGTGT
GCAGCACAACACCACATGTCAAGcacatttttctttgaattgaatGTGTA
GTAGATACATGACACACAGCACTGAAACAAGAAAGATAACCTTTGTTTGT
ATGTTTTCTAAATCCATGGTTTATTTACTTATTAGAGATTCTGCAAATGC
AAATCAATGTGCAGCAAAAAAGAAGGAAAGACAGGGAAAGGTGGCTGTCC
TTGTAAGACGAGGGGAGAGAACTGTAATGAATTATGTCAATGTGGAGTAT
GGCGCAAGAAAGAACTTGTAGCTGGCTGCAAGAATGGAGGACCTACAATG
ACGCAAAACACAGTCCGCACCACAAAAACGGTTAGAAGCTCTATATTCTT
GTAAATTAGTTTGTTCTAGCTGACCTGAGGATCTTTTTAAACGTAATTAC
ACTAAAACTCAAAACAGAATATACTAGTAGTGATCTACTGTGAGATCGGT
AACTTGCCTCAGTGGAGGTTAACATGCATAGTCCTCGAATGATTGACCTG
GCTggagataattcatttttaaggtggataaatatgctgaaaaactgctg
actcagcaaaaaatatcgataattttcgatatttaaaccaaaatatctcg
agatctatacatcgaaagttaacaaaccataccatttttggatactacta
attcagggctatccagttgtgggaatgattttttctgaaaatgctcctag
gaaaatgctgacgtaaTCGGAAAACGGCAAAAACGTccatttttcgcctt
aaaaatgccatttctcggcaccaggtggtcgaaacttaagaAATAACCct
attttctttatctacttttcacgctgaatccgttggtagtctcagatatt
tgattttcagacttcaaaaaaaccgttagtaaaggggggacccttgataa
gttctatcgATTAACTAAAAATCGATTCACTCGAAAACTGCAGGAGATTC
GAAGGGCAAATTTTTTTTGTCGATTCTACAtcctattaggagcataatat
caaaaatttgccctgatctaaggggtgccctacgaagtgacacaatccac
tgcctcggccgctggtctaatcttttcaaatttcatttccagaTCAACCT
TAATCAACAAGCTGGTGATGCCAACTCCAATCAAACTGTTCAAAATCGAT
CAGATGGCTTTATTTTGATGGAAGAGGAGTTGGAAATAGCAGAACGAAAA
ATTAGGGTTAGTATCTATAAGTTTTTACCACCACCAGTTATGTTTCTGGA
AAGCTGTGACGCTAGTTTAACTAAAAAACAACCACAATCATCTCTATTCT
CAAATATATTCATACCTTCATCCCCCTTAGGAGTAGGGAGCTTCAATTTG
GGATTTTCAAAAGTTGCCACTAGGGGGTAATCAAGTTTTGTGACTAAAAA
TGACTATGCTCACTTTTCTGGTTTATTGCTTTTCACATAAATTTTCAATT
CCTTTTAGGCCTTCTTAGATTCATTGTCACGAGAGGACCTCATGGAGATG
CTAATTGTGGCTAATAACCATGGGAATGGCTCCCTCCAAGCCTTGAAGGA
CAATCTTGCAAATAATCGCAAATTGGGTGGACATCCGAACACGTTCTTCT
GTTAAGAGCTTTGTTCAAATTATAAAGCGTGCCTTAAGTGCACTTGATAA
AGAGGACAGAGAGGATGCCAGGAAGGAGACAGT

Coding sequence (CDS) from alignment at scaffold_423:454536..456468+

>TCONS_00064761 ID=TCONS_00064761|Name=TCONS_00064761|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_423:454536..456468+ (Clytia hemisphaerica)
ATGGAAACTGTGTCAAATGGAAAGAGATTCTGCAAATGCAAATCAATGTG
CAGCAAAAAAGAAGGAAAGACAGGGAAAGGTGGCTGTCCTTGTAAGACGA
GGGGAGAGAACTGTAATGAATTATGTCAATGTGGAGTATGGCGCAAGAAA
GAACTTGTAGCTGGCTGCAAGAATGGAGGACCTACAATGACGCAAAACAC
AGTCCGCACCACAAAAACGaTCAACCTTAATCAACAAGCTGGTGATGCCA
ACTCCAATCAAACTGTTCAAAATCGATCAGATGGCTTTATTTTGATGGAA
GAGGAGTTGGAAATAGCAGAACGAAAAATTAGGGCCTTCTTAGATTCATT
GTCACGAGAGGACCTCATGGAGATGCTAATTGTGGCTAATAACCATGGGA
ATGGCTCCCTCCAAGCCTTGAAGGACAATCTTGCAAATAATCGCAAATTG
GGTGGACATCCGAACACGTTCTTCTGTTAAATGGAAACTGTGTCAAATGG
AAAGAGATTCTGCAAATGCAAATCAATGTGCAGCAAAAAAGAAGGAAAGA
CAGGGAAAGGTGGCTGTCCTTGTAAGACGAGGGGAGAGAACTGTAATGAA
TTATGTCAATGTGGAGTATGGCGCAAGAAAGAACTTGTAGCTGGCTGCAA
GAATGGAGGACCTACAATGACGCAAAACACAGTCCGCACCACAAAAACGa
TCAACCTTAATCAACAAGCTGGTGATGCCAACTCCAATCAAACTGTTCAA
AATCGATCAGATGGCTTTATTTTGATGGAAGAGGAGTTGGAAATAGCAGA
ACGAAAAATTAGGGCCTTCTTAGATTCATTGTCACGAGAGGACCTCATGG
AGATGCTAATTGTGGCTAATAACCATGGGAATGGCTCCCTCCAAGCCTTG
AAGGACAATCTTGCAAATAATCGCAAATTGGGTGGACATCCGAACACGTT
CTTCTGTTAAATGGAAACTGTGTCAAATGGAAAGAGATTCTGCAAATGCA
AATCAATGTGCAGCAAAAAAGAAGGAAAGACAGGGAAAGGTGGCTGTCCT
TGTAAGACGAGGGGAGAGAACTGTAATGAATTATGTCAATGTGGAGTATG
GCGCAAGAAAGAACTTGTAGCTGGCTGCAAGAATGGAGGACCTACAATGA
CGCAAAACACAGTCCGCACCACAAAAACGaTCAACCTTAATCAACAAGCT
GGTGATGCCAACTCCAATCAAACTGTTCAAAATCGATCAGATGGCTTTAT
TTTGATGGAAGAGGAGTTGGAAATAGCAGAACGAAAAATTAGGGCCTTCT
TAGATTCATTGTCACGAGAGGACCTCATGGAGATGCTAATTGTGGCTAAT
AACCATGGGAATGGCTCCCTCCAAGCCTTGAAGGACAATCTTGCAAATAA
TCGCAAATTGGGTGGACATCCGAACACGTTCTTCTGTTAAATGGAAACTG
TGTCAAATGGAAAGAGATTCTGCAAATGCAAATCAATGTGCAGCAAAAAA
GAAGGAAAGACAGGGAAAGGTGGCTGTCCTTGTAAGACGAGGGGAGAGAA
CTGTAATGAATTATGTCAATGTGGAGTATGGCGCAAGAAAGAACTTGTAG
CTGGCTGCAAGAATGGAGGACCTACAATGACGCAAAACACAGTCCGCACC
ACAAAAACGaTCAACCTTAATCAACAAGCTGGTGATGCCAACTCCAATCA
AACTGTTCAAAATCGATCAGATGGCTTTATTTTGATGGAAGAGGAGTTGG
AAATAGCAGAACGAAAAATTAGGGCCTTCTTAGATTCATTGTCACGAGAG
GACCTCATGGAGATGCTAATTGTGGCTAATAACCATGGGAATGGCTCCCT
CCAAGCCTTGAAGGACAATCTTGCAAATAATCGCAAATTGGGTGGACATC
CGAACACGTTCTTCTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040612XLOC_040612Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064761-exon-scaffold_423-1491911889:454536..454619TCONS_00064761-exon-scaffold_423-1491911889:454536..454619Clytia hemisphaericaexon
TCONS_00064761-exon-scaffold_423-1510915933:454536..454619TCONS_00064761-exon-scaffold_423-1510915933:454536..454619Clytia hemisphaericaexon
TCONS_00064761-exon-scaffold_423-1575043694:454536..454619TCONS_00064761-exon-scaffold_423-1575043694:454536..454619Clytia hemisphaericaexon
TCONS_00064761-exon-scaffold_423-1491911889:454921..455115TCONS_00064761-exon-scaffold_423-1491911889:454921..455115Clytia hemisphaericaexon
TCONS_00064761-exon-scaffold_423-1510915933:454921..455115TCONS_00064761-exon-scaffold_423-1510915933:454921..455115Clytia hemisphaericaexon
TCONS_00064761-exon-scaffold_423-1575043694:454921..455115TCONS_00064761-exon-scaffold_423-1575043694:454921..455115Clytia hemisphaericaexon
TCONS_00064761-exon-scaffold_423-1491911889:455878..455991TCONS_00064761-exon-scaffold_423-1491911889:455878..455991Clytia hemisphaericaexon
TCONS_00064761-exon-scaffold_423-1510915933:455878..455991TCONS_00064761-exon-scaffold_423-1510915933:455878..455991Clytia hemisphaericaexon
TCONS_00064761-exon-scaffold_423-1575043694:455878..455991TCONS_00064761-exon-scaffold_423-1575043694:455878..455991Clytia hemisphaericaexon
TCONS_00064761-exon-scaffold_423-1491911889:456244..456468TCONS_00064761-exon-scaffold_423-1491911889:456244..456468Clytia hemisphaericaexon
TCONS_00064761-exon-scaffold_423-1510915933:456244..456468TCONS_00064761-exon-scaffold_423-1510915933:456244..456468Clytia hemisphaericaexon
TCONS_00064761-exon-scaffold_423-1575043694:456244..456468TCONS_00064761-exon-scaffold_423-1575043694:456244..456468Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064761-proteinTCONS_00064761-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:454536..456468 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.387603	0	0	0	0.336791	0.308337	0	0.412207	0.981411	0.61715	0	0.521781	0.0137378	0.28405	0	0	0	0	0.0219718	0.29978	0	0	0	0	0	0.132034	0	0.344635	0.248834	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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