|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064760 ID=TCONS_00064760|Name=TCONS_00064760|organism=Clytia hemisphaerica|type=transcript|length=1436bp
TGATTATAAAAGTGGTCAGATATCAAACGAAAAGCTTatatcaaaatttg
acattCTACAAAACGGTCGTGTCACAGATACACATTGTCGAAATCACAAA
AATCTAAACACgcaagaaaaaatattatatttatttatGAACAAAATGGC
ACCTAAAGATATTGGATACGCTCGTATTTTTATGAACGAAGAAGCGCCAA
TGCCGCATATATTACCTCACCATTTATTTGTTTTAGCTGCTGCTTCGGCT
TCCAAAGAAACTGGCCTCTATCCACTGACGGGTATGGAAAACACCAAAAG
CAAGAAAGAGAACCGCCCACCATTGAACCTTTCACGCCCTAAGTCACCCG
AAGACGCCCAAAACAGTAACCAAGgcaatgaagaagaagaacttAAAGAA
TTACGACTGATTATCCAGATGAACTGTACAATCAAGACACTGGAAGATGG
TTCAGGAAAAACATTGAGTTTATTACTCAAACTAGAAGACAAAATGAATA
GACAATTATCCCGTAAAATTGCAGACGACGAAAACCCATTGGAACTCGCA
AATGATTTAGTACATCACGGTCTTATCAGTGAGTTGGACGCGCAAAAAGT
CGCcactaagattgaagaatcgtTGAAAGCGGCTGTTTAAGGCTGTCCAA
GTCCGCCGCAGATTCGGAGGTTTTAAGAGGTGATATGCGATACCTTATGG
AGTTTTGAATGGAGATCCAAATTTGAGAGTAGTTTATACCAACGTATTAC
TACACACACTCAACCACATCGACCAATTGAAACAACGCTTGGTTTTAAAG
GGAAGATTTACTGACCAATCAGGAAGTACCTAAGCCATCACATGATGTGA
GAACGCTTGTTTCATTGGTTGTAAAGAATGCTGAATCAGCGCTTTGCGTC
ACATTAATACAACGAGAAAAAGAAGGATTTATGTTTTAAAGAACTTGAGA
GTTATTATTTATATTGCAAACTATTTTACGAACATCGAAATGTTTATTTC
GAGCAAACACAGTCGTTTACGAGCAGTTTAATTTGCGTGCCACGTGGAGT
TGCCATGAAAAGACAATGTATTGATAGAGACACCTAAAAACTTAATTTAA
CTGAATGTAGGAAATTTTACCATTGGCTAGAATGTAATGATTTAAACCGA
ACGCTATTTGCCACCGCAAATTTTTAACCATAGTTTAAAAGAACGTTTAa
aagcttgatttaaaaaacttGAATTATTCGAGGCTGAACTTTTTTTAACG
TGAAATGTTATTtgattgtttgtttgttgttgacaaaaaagatttttatg
ttttcttaaatcagaaaagcaaaataattttgtataaatttatttggaag
aaaattgtatatatttaaagtgtttaaaacaaatttagaaAGTTTTGATG
GTTCCTATTTAGTTGATAGAATGTCAAGAACATCCA Run BLAST on NCBI transcript from alignment at scaffold_423:433542..435575+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064760 ID=TCONS_00064760|Name=TCONS_00064760|organism=Clytia hemisphaerica|type=transcript|length=2034bp|location=Sequence derived from alignment at scaffold_423:433542..435575+ (Clytia hemisphaerica)
TGATTATAAAAGTGGTCAGATATCAAACGAAAAGCTTatatcaaaatttg
acattCTACAAAACGGTCGTGTCACAGATACACATTGTCGAAATCACAAA
AATCTAAACACgcaagaaaaaatattatatttatttatGAACAAAATGGC
ACCTAAAGATATTGGATACGCTCGTATTTTTATGAACGAAGAAGCGCCAA
TGCCGCATATATTACCTCACCATTTATTTGTTTTAGCTGCTGCTTCGGCT
TCCAAAGAGTAcgtgttttttgttgttgtttgtttttgttggatGTAGCG
GCACCTGTCGTATTTTTGGTTCAATGACGAATCTTTCTCCTTGTGATATT
TTTAGAACGATGTTGACCCTGTGTGACTGTTCGTCAAAACCTTTCGACCT
CCTGATGTTTTAACCTTCACTTCTCTTCTGATCTTACGATTGGTTAAATG
AACTtcagtcaaaatattaagaaaatttgattgataCTTTATACTTATAT
TATAACCTATGGTGAGATTGTTAGACACTTCACAGACAAGGTGTGGTAAT
ATCAGTTGTTTTAACCAATTATATTCTTTTCTCTACAGAACTGGCCTCTA
TCCACTGACGGGTATGGAAAACACCAAAAGCAAGAAAGAGAACCGCCCAC
CATTGAACCTTTCACGCCCTAAGTCACCCGAAGACGCCCAAAACAGTAAC
CAAGgcaatgaagaagaagaacttAAAGAATTACGACTGGTAAGTTACAA
CTTGAATAGATGGAAgtaattttttcatttgtcaaaatACTTGATGTTTT
GAAAAGACGTGATTTTAGTGGGCTTAATGATGTAAGAATTTTCaactatt
ttaatattttaataccCCACGCAAAAGAAATGTNTTTAGTGGGCTTAATG
CTGTAAGAATCTTCaactattttaatattttaataccCCACGCATAGCCT
TACTTAACAGAAGATGATATCACAAACTCTAACCCTCTCTTTTTTACCAA
CCATTAGATTATCCAGATGAACTGTACAATCAAGACACTGGAAGATGGTT
CAGGAAAAACATTGAGTTTATTACTCAAACTAGAAGACAAAATGAATAGA
CAATTATCCCGTAAAATTGCAGACGACGAAAACCCATTGGAACTCGCAAA
TGATTTAGTACATCACGGTCTTATCAGTGAGTTGGACGCGCAAAAAGTCG
CcactaagattgaagaatcgtTGAAAGCGGCTGTTTAAGGCTGTCCAAGT
CCGCCGCAGATTCGGAGGTTTTAAGAGGTGATATGCGATACCTTATGGAG
TTTTGAATGGAGATCCAAATTTGAGAGTAGTTTATACCAACGTATTACTA
CACACACTCAACCACATCGACCAATTGAAACAACGCTTGGTTTTAAAGGG
AAGATTTACTGACCAATCAGGAAGTACCTAAGCCATCACATGATGTGAGA
ACGCTTGTTTCATTGGTTGTAAAGAATGCTGAATCAGCGCTTTGCGTCAC
ATTAATACAACGAGAAAAAGAAGGATTTATGTTTTAAAGAACTTGAGAGT
TATTATTTATATTGCAAACTATTTTACGAACATCGAAATGTTTATTTCGA
GCAAACACAGTCGTTTACGAGCAGTTTAATTTGCGTGCCACGTGGAGTTG
CCATGAAAAGACAATGTATTGATAGAGACACCTAAAAACTTAATTTAACT
GAATGTAGGAAATTTTACCATTGGCTAGAATGTAATGATTTAAACCGAAC
GCTATTTGCCACCGCAAATTTTTAACCATAGTTTAAAAGAACGTTTAaaa
gcttgatttaaaaaacttGAATTATTCGAGGCTGAACTTTTTTTAACGTG
AAATGTTATTtgattgtttgtttgttgttgacaaaaaagatttttatgtt
ttcttaaatcagaaaagcaaaataattttgtataaatttatttggaagaa
aattgtatatatttaaagtgtttaaaacaaatttagaaAGTTTTGATGGT
TCCTATTTAGTTGATAGAATGTCAAGAACATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064760-exon-scaffold_423-1491911889:433542..433799 | TCONS_00064760-exon-scaffold_423-1491911889:433542..433799 | Clytia hemisphaerica | exon |
| TCONS_00064760-exon-scaffold_423-1510915933:433542..433799 | TCONS_00064760-exon-scaffold_423-1510915933:433542..433799 | Clytia hemisphaerica | exon |
| TCONS_00064760-exon-scaffold_423-1575043694:433542..433799 | TCONS_00064760-exon-scaffold_423-1575043694:433542..433799 | Clytia hemisphaerica | exon |
| TCONS_00064760-exon-scaffold_423-1491911889:434130..434280 | TCONS_00064760-exon-scaffold_423-1491911889:434130..434280 | Clytia hemisphaerica | exon |
| TCONS_00064760-exon-scaffold_423-1510915933:434130..434280 | TCONS_00064760-exon-scaffold_423-1510915933:434130..434280 | Clytia hemisphaerica | exon |
| TCONS_00064760-exon-scaffold_423-1575043694:434130..434280 | TCONS_00064760-exon-scaffold_423-1575043694:434130..434280 | Clytia hemisphaerica | exon |
| TCONS_00064760-exon-scaffold_423-1491911889:434549..435575 | TCONS_00064760-exon-scaffold_423-1491911889:434549..435575 | Clytia hemisphaerica | exon |
| TCONS_00064760-exon-scaffold_423-1510915933:434549..435575 | TCONS_00064760-exon-scaffold_423-1510915933:434549..435575 | Clytia hemisphaerica | exon |
| TCONS_00064760-exon-scaffold_423-1575043694:434549..435575 | TCONS_00064760-exon-scaffold_423-1575043694:434549..435575 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_423 | supercontig | scaffold_423:433542..435575 + |
Blast
The following BLAST results are available for this feature:
|
