TCONS_00064749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064749
Unique NameTCONS_00064749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1943

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064749 ID=TCONS_00064749|Name=TCONS_00064749|organism=Clytia hemisphaerica|type=transcript|length=1943bp
TTTCagtaaagaaataaataaatacataACAATATAAATATAATGGCGAC
CACAGTACAAACTGTTGCCTACCCGACTGTGGCTCAACCACAAATCGTGG
TTCCGGCAAACAACCCACGTGGTATGAATGTCAAATCTATCCGTGGACTA
GGGATCACACAAATTGTGATCGGAGCATTAACTGTTCTTTTGGGGATTAT
CGCTATCGCTGTTTTCGAATATGGATACTGGGTGAATGGTAGTGGCTCTG
GTATTTGGTTTGGTATCTGGATTCTGATCACCGGTATTATTGGTGTGATG
TCGGCCAAGAATCCTCAACAAACATCTTTGAATGGTGTCAATATGGGATT
CAGTATCGTGTGTTGTGTCGTCTCATTTTTTGTTGGTATCTTCTATATCG
TCGCCCTTGTCTATTATAGCAATTGTGAAAGTTATTGGAGTTACAACCAC
TGGAACAGTGGTGGCAGTTACCGCTACTACGATCCGTGTTATAATGATAA
AGATTCCGGCACCGCTATTTATGCCATTCTCATGATACTGATGATCGCTG
AATTCTTTATTTCCATGGCTGTTTCGATTGTCTGTTGTCAAAACGGATGT
TGCCGATCATCTGCTGCTGGAGGCGTGATCATTCAACAACAACCTGGTCC
TACCATCGTTTCATCCACTGGTGTTGTCATGTCTTCTCAAGCCCAATACC
CTGCTCAACAAGTTGTCTACCCACCTCAATCTGTTGCTGGCTACCCACCC
CAATCACAAGTCGTCTACCCTGCTGGTGGATACCCGAACCAACAATATGT
TACAACTGCAGCACCAATGGGAGGTGTCCCACAGCCTGCTTACTCCAACC
AGATGCCACCCCAGGATCCATCAAAGGTAGCCCCACCACCTCCATACACT
AGCTAGGCTACTGGCATTGGAAGTGGGTTGTATCATCGATAACGTATTTT
AATGTACGTGGTGATCGTTTATCATAACTACAACTCTTGTCTAAAGAAAG
TATGTAATGTTATAACAAACTAAGTGATGATTTGCTGGTGTGTTGTTTAT
GCGAGAGCTTTGTGACTCAACTCTCCATTATGATAAGTTATTATTTAATT
GATGTAAACTTAACGTAACCTGATTTGTATCTGCGTCGTGGATTTCAGTT
TTTGGTCTAATATCTACTTAACTATTGAACAATGTATCGTTTAACGATTT
CCGTCGATTACTTCTTGCTTTGCCACACATTTTGTAGGACAGGAAACTAA
CCAATTATTCCGGCAACATTTATAATTTTCTGCTTGAATAATGCAGTACA
GTTTGTGAATGTCGTGTTGATGAGTGCATTTCCAAATATTACgccttatt
tttaaaaaatgtataacaaattCTTTTGAATACATTAGTGGCATTACCAC
TTTCATCTTTTTGGATAAATTCCCATCAGTATTCTCGAAGAGACCTCAAT
TACAAGTTAACAGAGTTAACAAACTacgtgtttttataagaacaaaattc
ttgaacttttaatgtttttaacgccttccatttttctaagaaatcgtcCA
CAAAGCTTTAAAAAGTTCTTGAGTTGTTCTTTACATTTTGGTTATGGGAG
CCATattttcttatagtttttttcttataaaaaacctgtaCGGATGAATA
TGAAACAATGCCTTTTATATAAGCAATACCTTTATTCtttaaattatatt
tcttttagAAAGAGTTTTAAGATTCTTTCAAACGGTCATAATTTTCTTTC
ATTATGTGTAAATAAATTACTTTTATGTGTCAGATTAATTGTAGCAACGT
AACAAATGTTTTTTACCTTAAAAAATgaacaatgtttttatttgatagCC
TGTAAATTGGGACTAGAAATATCTTCACAATTGTGTGCCCTTTACTGCCA
AACTGTGACaccgaaatccgcgaaatccccgcgaaaatttaac
Run BLAST on NCBI

transcript from alignment at scaffold_423:302209..306841+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064749 ID=TCONS_00064749|Name=TCONS_00064749|organism=Clytia hemisphaerica|type=transcript|length=4633bp|location=Sequence derived from alignment at scaffold_423:302209..306841+ (Clytia hemisphaerica)
TTTCagtaaagaaataaataaatacataACAATATAAATATAATGGCGAC
CACAGTACAAACTGTTGCCTACCCGACTGTGGCTCAACCACAAATCGTGG
TTCCGGCAAACAACCCACGTGGTATGAATGTCAAATCTATCCGTGGACTA
GGTAAGTTCttctgtatacttttttttctacgaacaaactatataagaac
ataaggcttcgatttgCGAAATGTTAAGAGGCCTCAAAattgttggatgt
tcttatttataaacaaaaggTGTAGTCTTTTTCTGCCTATCAGCCCCAGA
TTATTGAAAAGCAGATCTTCTTAGGTATATTCAAGATAAGTTATAATTAA
AATTCCTCTGCCAAGCCAGTTCACTAATGTTATCTTGTGGATCAAGTTTT
ATATGCTCTTTTTATTTTGGAAGCTTCTAAAcagaaaaagtcagggaaaa
ggAACTAGATAACATAACCTGAGAGCTGCACTGGCATATATATTCAAAAA
ACGATCAAAAGGTCAATACCTCTGAGTGTGGTAATGCAATGATGAGAAAA
GACGAAAGGCATAACTAATTAAATCACGTGTTATATTATTTAGGGATCAC
ACAAATTGTGATCGGAGCATTAACTGTTCTTTTGGGGATTATCGCTATCG
CTGTTTTCGAATATGGATACTGGGTGAATGGTAGTGGCTCTGGTATTTGG
TTTGGTATCTGGATTCTGATCACCGGTATTATTGGTGTGATGTCGGCCAA
GAATCCTCAACAAACATCTTTGAACGGTGTCAACATGGGATTCAGTATCG
TGTGTTGTGTCGTCTCATTTTTTGTTGGTATCTTCTATATCGTCGCCCTT
GTGtaagttttgctttttttttttaattttgatctaTTTTGTTCTATTGG
TCTAATGGTCTTTTCTTCTTGACATCCCAATCAAAAATATAAAGCCTCAT
AAATGACAACGAGGTGACTGATTACAATGGGGTAAACTTCCCCTAGTTTA
GAATTTCCCTGATAAGAGGGATAGCAAAGAAGGGAAAGGTTAAGAAAAGG
GTTGAAAACCAAACTCATTTTGATGTTGAGGGTAGATAGAATCGATATTT
AACTTAGACAGCCCAGTAATTTAGGAATTATAGACAATCTTTTGTTTTCA
CGGGGCCTACGACCAGCCGGCTTGGCTTTCTATGAACTGAACNCagtaaa
gaaataaataaatacataACAATATAAATATAATGGCGACCACAGTACAA
ACTGTTGCCTACCCGACTGTGGCTCAACCACAAATCGTGGTTCCGGCAAA
CAACCCACGTGGTATGAATGTCAAATCTATCCGTGGACTAGGTAAGTTCt
tctgtatacttttttttctacgaacaaactatataagaacataaggcttc
gatttgCGAAATGTTAAGAGGCCTCAAAattgttggatgttcttatttat
aaacaaaaggTGTAGTCTTTTTCTGCCTATCAGCCCCAGATTATTGAAAA
GCAGATCTTCTTAGGTATATTCAAGATAAGTTATAATTAAAATTCCTCTG
CCAAGCCAGTTCACTAATGTTATCTTGTGGATCAAGTTTTATATGCTCTT
TTTATTTTGGAAGCTTCTAAAcagaaaaagtcagggaaaaggAACTAGAT
AACATAACCTGAGAGCTGCACTGGCAtatatattcaaaaaatatattcaa
aaaacgATCAAAAGGTCGATCTCTCTGAGTGTGGTAATGCAATGATGAGA
AAAGACGAAAGGCATAACTAATTAAATCACGTGTTATATTATTTAGGGAT
CACACAAATTGTGATCGGAGCATTAACTGTTCTTTTGGGGATTATCGCTA
TCGCTGTTTTCGAATATGGATACTGGGTGAATGGTAGTGGCTCTGGTATT
TGGTTTGGTATCTGGATTCTGATCACCGGTATTATTGGTGTGATGTCGGC
CAAGAATCCTCAACAAACATCTTTGAATGGTGTCAATATGGGATTCAGTA
TCGTGTGTTGTGTCGTCTCATTTTTTGTTGGTATCTTCTATATCGTCGCC
CTTGTGtaagttttgcttttttttaagtTGATCTATTTTGTTCTATTAAt
agtctttttttcttcttgacaTCCCAATtacaaatatataaaaaaaatta
aatattgaaAAGCTAATGATACGCTGGCAACGAGGTGACTGATTACAATT
GGGTAAACTTCCCCTAGTTTGGAATTTCCCTGATAAGAGGGATAGCAAAG
AAGGGAAAGGTTAAGAAAAGAGTTGAAAACCAAACTCATTTTGATGTTGA
GAGTAGATAGAATCGATATTTAACTTAGACAGCCCAGTAATTTAGGAATT
ATAGacaatattttgttttcacggggtctaCGACCAGCCGGCTTGGCTTT
CTATGAACTGAATAGAACATTAGAAGGAACATCCCCTAGTTTGCAACACT
GACGCCTTAGACTACCCAACCATCGCTAGGGGGTGTGCAGTAAAGTTACT
TCTAAAGTGTTCTAATTTTAAATTAAGTAAATGCAATGTCACAAAATGAT
CGTTATATATCATTAAGCCTAATCTAGTAGTAGGATTTTATTGGACTTCA
AAGTTGTGATATCTGTTCTCCCTATCCAGCTATTATAGCAATTGTGAAAG
TTATTGGAGTTACAACCACTGGAACAGTGGTGGCAGTTACCGCTACTACG
ATCCGTGTTATAATGATAAAGATTCCGGCACCGCTATTTATGCCATTCTC
ATGATACTGATGATCGCTGAATTCTTTATTTCCATGGCTGTTTCGATTGT
CTGTTGTCAAAACGGATGTTGCCGATCATCTGCTGCTGGAGGTAAGTGGT
TTTCTCACTTTCTCACTGGctaaacaaaatctttgatcgtagcttttttt
gaaaagctcaatgTAGGGTAAATGCACCGAAAGTGTattgatcttttttt
tcttaaacaCATTGTGATGTAGCGCCGTAGAACGTAAAGGCAACATAACG
TTGATTAGggtagtttttttcatttttatttaagcGTATAGATATCACGG
CCAAAAGTGAGAAGTCCTTCATTTGGATATATCTTTTTACAACTTCTTTA
CTTTCGTCGTTTTCAGTAGAGGAGAGATGATATTTTCACTTTAAAGTTGT
TTTAACGATTAtccaaattgaaaataaatatatatgcTGCAATCGATTTT
GATCATAACTCtcgtgacattttcttttagGCGTGATCATTCAACAACAA
CCTGGTCCTACCATCGTTTCATCCACTGGTGTTGTCATGTCTTCTCAAGC
CCAATACCCTGCTCAACAAGTTGTCTACCCACCTCAATCTGTTGCTGGCT
ACCCACCCCAATCACAAGTCGTCTACCCTGCTGGTGGATACCCGAACCAA
CAATATGTTACAACTGCAGCACCAATGGGAGGTGTCCCACAGCCTGCTTA
CTCCAACCAGATGCCACCCCAGGATCCATCAAAGGTAGCCCCACCACCTC
CATACACTAGCTAGGCTACTGGCATTGGAAGTGGGTTGTATCATCGATAA
CGTATTTTAATGTACGTGGTGATCGTTTATCATAACTACAACTCTTGTCT
AAAGAAAGTATGTAATGTTATAACAAACTAAGTGATGATTTGCTGGTGTG
TTGTTTATGCGAGAGCTTTGTGACTCAACTCTCCATTATGATAAGTTATT
ATTTAATTGATGTAAACTTAACGTAACCTGATTTGTATCTGCGTCGTGGA
TTTCAGTTTTTGGTCTAATATCTACTTAACTATTGAACAATGTATCGTTT
AACGATTTCCGTCGATTACTTCTTGCTTTGCCACACATTTTGTAGGACAG
GAAACTAACCAATTATTCCGGCAACATTTATAATGNCGTTCCATTGATTA
CATTTTGCTTTGCCACGCATTTTGTAGGACAGGAAACTAACCGATTATTC
CGGCAACATTTATAATTTTCTGCTTGAATAATGCAGTACAGTTTGTGAAT
GTCGTGTTGATGAGTGCATTTCCAAATATTACgccttatttttaaaaaat
gtataacaaattCTTTTGAATACATTAGTGGCATTACCACTTTCATCTTT
TTGGATAAATTCCCATCAGTATTCTCGAAGAGACCTCAATTACAAGTTAA
CAGAGTTAACAAACTacgtgtttttataagaacaaaattcttgaactttt
aatgtttttaacgccttccatttttctaagaaatcgtcCACAAAGCTTTA
AAAAGTTCTTGAGTTGTTCTTTACATTTTGGTTATGGGAGCCATattttc
ttatagtttttttcttataaaaaacctgtaCGGATGAATATGAAACAATG
CCTTTTATATAAGCAATACCTTTATTCtttaaattatatttcttttagAA
AGAGTTTTAAGATTCTTTCAAACGGTCATAATTTTCTTTCATTATGTGTA
AATAAATTACTTTTATGTGTCAGATTAATTGTAGCAACGTAACAAATGTT
TTTTACCTTAAAAAATgaacaatgtttttatttgatagCCTGTAAATTGG
GACTAGAAATATCTTCACAATTGTGTGCCCTTTACTGCCAAACTGTGACa
ccgaaatccgcgaaatccccgcgaaaatttaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040607XLOC_040607Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064749-exon-scaffold_423-1491911889:302209..302233TCONS_00064749-exon-scaffold_423-1491911889:302209..302233Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1510915933:302209..302233TCONS_00064749-exon-scaffold_423-1510915933:302209..302233Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1575043694:302209..302233TCONS_00064749-exon-scaffold_423-1575043694:302209..302233Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1491911889:303424..303549TCONS_00064749-exon-scaffold_423-1491911889:303424..303549Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1510915933:303424..303549TCONS_00064749-exon-scaffold_423-1510915933:303424..303549Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1575043694:303424..303549TCONS_00064749-exon-scaffold_423-1575043694:303424..303549Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1491911889:304005..304263TCONS_00064749-exon-scaffold_423-1491911889:304005..304263Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1510915933:304005..304263TCONS_00064749-exon-scaffold_423-1510915933:304005..304263Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1575043694:304005..304263TCONS_00064749-exon-scaffold_423-1575043694:304005..304263Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1491911889:304838..305049TCONS_00064749-exon-scaffold_423-1491911889:304838..305049Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1510915933:304838..305049TCONS_00064749-exon-scaffold_423-1510915933:304838..305049Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1575043694:304838..305049TCONS_00064749-exon-scaffold_423-1575043694:304838..305049Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1491911889:305439..306083TCONS_00064749-exon-scaffold_423-1491911889:305439..306083Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1510915933:305439..306083TCONS_00064749-exon-scaffold_423-1510915933:305439..306083Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1575043694:305439..306083TCONS_00064749-exon-scaffold_423-1575043694:305439..306083Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1491911889:306166..306841TCONS_00064749-exon-scaffold_423-1491911889:306166..306841Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1510915933:306166..306841TCONS_00064749-exon-scaffold_423-1510915933:306166..306841Clytia hemisphaericaexon
TCONS_00064749-exon-scaffold_423-1575043694:306166..306841TCONS_00064749-exon-scaffold_423-1575043694:306166..306841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:302209..306841 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.6431	24.6017	55.4433	59.4018	0	0	0	0	32.2229	44.2305	12.6627	41.3586	28.41	0.129057	11.0714	10.0542	0.0711145	9.83254	42.9962	90.9003	161.236	145.75	65.1944	93.8788	0	0	68.851	85.1593	44.6659	42.2422
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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