TCONS_00064740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064740
Unique NameTCONS_00064740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064740 ID=TCONS_00064740|Name=TCONS_00064740|organism=Clytia hemisphaerica|type=transcript|length=438bp
TCGTGTTTATCGTGGAAAGTGGGCTGCTTGCACCAGGGCTACTCCGGACC
AATGTCAGAATCCGTTCTTTTACAAAGGAGTAAAGTATGAAGGGTGTTCA
ACAAGATTCAGTCCAGTCCCTTGGTGTTCATTGGACCGAAATCATAAACG
AGGGAAAAGTAAATTCGCATATTGCCCAAAGAACCTTCCAGGACGAAAGT
ACGCCCGCTTACATCTACAAAGAGGTTTATGCAGGAAATCGTTGAGTTTG
ACATTCGACAAACCTGTCACTCAGTTCAGATCAGGATGTTTGATCTACAA
GTCTAAACGCTTGAATACGCTGAATTTTGTTGTCTCCAAAAGATGTTGCA
GAATCAAGTCTTTTGGCTTCTACGTTAGTTACAAAGGGGCTCCACCCAAA
CTCGTCGATGTCGAAATCCATGGTAAAAGTATCTGCNN
Run BLAST on NCBI

transcript from alignment at scaffold_423:227953..230163+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064740 ID=TCONS_00064740|Name=TCONS_00064740|organism=Clytia hemisphaerica|type=transcript|length=2211bp|location=Sequence derived from alignment at scaffold_423:227953..230163+ (Clytia hemisphaerica)
TCGTGTTTATCGTGGAAAGTGGGCTGCTTGCACCAGGGCTACTCGTAAGT
ATATTACTTTACTTGTTGGTGAATAAAAAGGAAggtcttaaaaacaaaag
acgTTCTTCATAacctgaaattttcattttgcagAACCTTGATTACGAAT
ACTCATGTAATAAGATAGCAGTCCAGTCAAAAAACCCTGACTCGCTTGGA
AGAATCGGATAAGAATCGAAATATTCTGCAATTCCATCCAATAAACCATA
TCATACACTACACTGACCACCCCTCTTAACCGGGAAAACACCTCTAAATT
CGGAAATTCCCAGTGACTTTTTTAGGTAGAGAATAGAATAAAATATAAGT
CCGTCTCTAAATTTAATAGTAAATGTGTGTTAATCTTCTTCGGGGCTCTC
GCAAACCCAACCGCGGCTTTTCACAAGGTCACTGGCGAAAGTGTGTCAAG
CTTCTTATTATTTCTCTTTCAGCGGACCAATGTCAGAATCCGTTCTTTTA
CAAAGGAGTAAAGTATGAAGGGTGTTCAACAAGATTCAGTCCAGTCCCTT
GGTGTTCATTGGACCGAAATCATAAACGAGGGAAAAGTAAATTCGCATAT
TGCCCAAAGAACCTTCCAGGACGTACGTAGTAaattcttgttttattttt
atcctCGTTATGTGTATTCAAAGACAAAATGTCGTGATATTTTTAATCCT
GTGCCAGGCAAATTTCCAGGGTTTTGAGCTGCTACCGTCTTTATTTCAAA
GATTAAGTTTGAATTCAGTTCGAAGAACAAAATAATCAACCCAGGCTCTG
TTTAATTAGTTGGGAActattaaaacacaaagaattaactTCAGAATGGG
CTTTTTCTGTTAATAAGGGCCTAGGACCATGTACAAAAATtaggattgag
tttcaaaattcaagcaaAGAATGAGTTTTTGCCACCGTTGTCTGGTAGCA
GAAAAGGCCTGGAAATTGACCTGTGTGCAAACAAGGTTCAAAGTGCTACT
AATGTTTCATATTACTTTTAATAGACTTAGTTCGACCtttttatcaaaag
aatttATTCTACGTTATATAAGCAGTTCAGGATTCCCCAGCAAGGCTATT
ACTGAAGCGTTGCAAGTGGCTTGCTTAAGCACTGTGATATAGTGCGCAAT
ATCCCGTTAGGCTTTTATAAAGACTTGACACTGTTGTTCAGCAGCATACT
TGTTGGTAAATACATTGAAAGTTTTGCATCATTCTCAGCTTGAGATGATC
ACAACGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAAAGTGCTACTAATGTTTCATATTACTTTTAATAGACTTAGT
TCGACCtttttatcaaaagaatttATTCTACGTTATATAAGCAGTTCAGT
ATTCCCCAGCAAGGCTATTACTGAAGCGTTGCAAGTGGCTTGCTTAAGCA
CTGTGATATAGTGCGCAATATCCCGTTAGGCTTTTTTAAAGACTTGACAC
TGTTGTTCAGCAGCATACTTGTTGGTAAATACATTGAAAGTTTTGCATCA
TTCTCAGCTTGAGATGATCACAACGGGACGTTTCACGTCACACAGTTATG
TTTGTCACAAATTAAATTGTATGCACAGTTTTGCTCCTACCTAGAAAGCA
TCGAACCTTCAAAGACATACTTTTTCTTAGGATGATTAAACTAAGAAATG
TTAAGTCACATCTGGTCACAGTTGTTTCTAGACATCATTGTCATACAAAA
GCAacattttcaaatgtaaacgtGATCAAACAATACTTTTATCAACCCTT
AAAGTGTTAGGAGAATTTAAGGGTTGATAAATGTATTTTCCTAATTCTTC
TGCTTTTTCCTTTTACTCATTGTTACTCCCTAACTGAAGCAAATTCTATT
TATCACCAAATTTTCAGGAAAGTACGCCCGCTTACATCTACAAAGAGGTT
TATGCAGGAAATCGTTGAGTTTGACATTCGACAAACCTGTCACTCAGTTC
AGATCAGGATGTTTGATCTACAAGTCTAAACGCTTGAATACGCTGAATTT
TGTTGTCTCCAAAAGATGTTGCAGAATCAAGTCTTTTGGCTTCTACGTTA
GTTACAAAGGGGCTCCACCCAAACTCGTCGATGTCGAAATCCATGGTAAA
AGTATCTGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040603XLOC_040603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064740-exon-scaffold_423-1491911889:227953..227996TCONS_00064740-exon-scaffold_423-1491911889:227953..227996Clytia hemisphaericaexon
TCONS_00064740-exon-scaffold_423-1510915933:227953..227996TCONS_00064740-exon-scaffold_423-1510915933:227953..227996Clytia hemisphaericaexon
TCONS_00064740-exon-scaffold_423-1575043694:227953..227996TCONS_00064740-exon-scaffold_423-1575043694:227953..227996Clytia hemisphaericaexon
TCONS_00064740-exon-scaffold_423-1491911889:228425..228574TCONS_00064740-exon-scaffold_423-1491911889:228425..228574Clytia hemisphaericaexon
TCONS_00064740-exon-scaffold_423-1510915933:228425..228574TCONS_00064740-exon-scaffold_423-1510915933:228425..228574Clytia hemisphaericaexon
TCONS_00064740-exon-scaffold_423-1575043694:228425..228574TCONS_00064740-exon-scaffold_423-1575043694:228425..228574Clytia hemisphaericaexon
TCONS_00064740-exon-scaffold_423-1491911889:229920..230163TCONS_00064740-exon-scaffold_423-1491911889:229920..230163Clytia hemisphaericaexon
TCONS_00064740-exon-scaffold_423-1510915933:229920..230163TCONS_00064740-exon-scaffold_423-1510915933:229920..230163Clytia hemisphaericaexon
TCONS_00064740-exon-scaffold_423-1575043694:229920..230163TCONS_00064740-exon-scaffold_423-1575043694:229920..230163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:227953..230163 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.19918	0	0.145674	0.0187309	0	0.242212	0	0	0	0.0944067	2.75788	3.07709	0	0.344669	6.47809	6.01317	8.70475	15.0337	34.467	42.6536	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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