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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064739 ID=TCONS_00064739|Name=TCONS_00064739|organism=Clytia hemisphaerica|type=transcript|length=697bp
TATAAATAGTGTTGATGGTCGGTCAACATCGACATTACCATTGGACAAGC
ATCAGTATGAAGACTCTACTTTGCATCCAGGGTTTGTTGGTGatattatg
ttttcatgcaTCGAAAGCACAAACAAAGGATTGCAATGAACTGATAACCA
ACCCTGATGCTTTTACAACAAGCCGGCAGTGTCATTTTCCGTTTTATTAC
CGCCGTAAATGGTATTACACTTGTGCCAAGTCCAAGTTGTACAATTTTTG
TTCCGTCGATCGTGTTTATCGTGGAAAGTGGGCTGCTTGCACCAGGGCTA
CTCCGGACCAATGTCAGAATCCGTTCTTTTACAAAGGAGTAAAGTATGAA
GGGTGTTCAACAAGATTCAGTCCAGTCCCTTGGTGTTCATTGGACCGAAA
TCATAAACGAGGGAAAAGTAAATTCGCATATTGCCCAAAGAACCTTCCAG
GACGAAAGTACGCCCGCTTACATCTACAAAGAGGTTTATGCAGGAAATCG
TTGAGTTTGACATTCGACAAACCTGTCACTCAGTTCAGATCAGGATGTTT
GATCTACAAGTCTAAACGCTTGAATACGCTGAATTTTGTTGTCTCCAAAA
GATGTTGCAGAATCAAGTCTTTTGGCTTCTACGTTAGTTACAAAGGGGCT
CCACCCAAACTCGTCGATGTCGAAATCCATGGTAAAAGTATCTGCNN Run BLAST on NCBI protein sequence of TCONS_00064739-protein >TCONS_00064739-protein ID=TCONS_00064739-protein|Name=TCONS_00064739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MVGQHRHYHWTSISMKTLLCIQGLLVILCFHASKAQTKDCNELITNPDAF
TTSRQCHFPFYYRRKWYYTCAKSKLYNFCSVDRVYRGKWAACTRATPDQC
QNPFFYKGVKYEGCSTRFSPVPWCSLDRNHKRGKSKFAYCPKNLPGRKYA
RLHLQRGLCRKSLSLTFDKPVTQFRSGCLIYKSKRLNTLNFVVSKRCCRI
KSFGFYVSYKGAPPKLVDVEIHGKSIC Run BLAST on NCBI transcript from alignment at scaffold_423:225434..230163+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064739 ID=TCONS_00064739|Name=TCONS_00064739|organism=Clytia hemisphaerica|type=transcript|length=4730bp|location=Sequence derived from alignment at scaffold_423:225434..230163+ (Clytia hemisphaerica)
TATAAATAGTGTTGATGGTCGGTCAACATCGACATTACCATTGGACAAGC
ATCAGTATGAAGACTCTACTTTGCATCCAGGGTTTGTTGGTGatattatg
ttttcatgcaTCGAAAGCACAAACAAAGGATTGCAATGAACTGATAACCA
ACCCTGATGCTTTTACAACAAGTATGTTTCAGTCTGATAGATTTTTCTGC
CCTTTTCTGACTTGTTCTTGAAACGAgttcggtttttttttaatcaatgc
tTTGATGGGTAGAATTAAGTTTAGATTAAATTTGTGGATGGTCTATTTGG
AAATGAACTTGCTTAATGTAAACTTTAGCTTGCTGGTTGTCATAATTCGT
ATATTTTAACAAATCTTTGATATCCTAGGAAAATTTTACCGCCACCTATT
GTaattattaatttcgcttagcgaaagtattacgatagcctttctgcggc
ggcggcgggGGAGAATTTTTTTGGGGCGAAGATTATGGCGTTGGCGTTTG
ACCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNtaaagtagatttcagattagctttaatctctacttcttctt
tttcccatgcagttcaaattctaggcgaaattttcgacttcaagtcgtct
tgtttttcttttaaatcaatttctcaaaatattttgcagacAATCTTATA
TCTTTCTTTTGTGACTTCATTTTAGCAGAAGACAACTAGATCTGCGAAAT
TTTATACCATAAAAGTAACATTTGCGGTTGTACTTTAAATtagtcaaaaa
gtttttttacttaATAACAAAAGCTTATCAATTGGACTATGTTCTACTGT
CTTGCAAGGACAATTTGACTTGTCTTTGCAGCTTAGTGTTTAATCATTTT
CTTTTACAGGCCGGCAGTGTCATTTTCCGTTTTATTACCGCCGTAAATGG
TATTACACTTGTGCCAAGTCCAAGTTGTACAATTTTTGTTCCGTCGATCG
TGTTTATCGTGGAAAGTGGGCTGCTTGCACCAGGGCTACTCGTAAGTATA
TTACTTTACTTGTTGGTGNTCGTGTTTATCGTGGAAAGTGGGCTGCTTGC
ACCAGGGCTACTCGTAAGTATATTACTTTACTTGTTGGTGAATAAAAAGG
AAggtcttaaaaacaaaagacgTTCTTCATAacctgaaattttcattttg
cagAACCTTGATTACGAATACTCATGTAATAAGATAGCAGTCCAGTCAAA
AAACCCTGACTCGCTTGGAAGAATCGGATAAGAATCGAAATATTCTGCAA
TTCCATCCAATAAACCATATCATACACTACACTGACCACCCCTCTTAACC
GGGAAAACACCTCTAAATTCGGAAATTCCCAGTGACTTTTTTAGGTAGAG
AATAGAATAAAATATAAGTCCGTCTCTAAATTTAATAGTAAATGTGTGTT
AATCTTCTTCGGGGCTCTCGCAAACCCAACCGCGGCTTTTCACAAGGTCA
CTGGCGAAAGTGTGTCAAGCTTCTTATTATTTCTCTTTCAGCGGACCAAT
GTCAGAATCCGTTCTTTTACAAAGGAGTAAAGTATGAAGGGTGTTCAACA
AGATTCAGTCCAGTCCCTTGGTGTTCATTGGACCGAAATCATAAACGAGG
GAAAAGTAAATTCGCATATTGCCCAAAGAACCTTCCAGGACGTACGTAGT
AaattcttgttttatttttatcctCGTTATGTGTATTCAAAGACAAAATG
TCGTGATATTTTTAATCCTGTGCCAGGCAAATTTCCAGGGTTTTGAGCTG
CTACCGTCTTTATTTCAAAGATTAAGTTTGAATTCAGTTCGAAGAACAAA
ATAATCAACCCAGGCTCTGTTTAATTAGTTGGGAActattaaaacacaaa
gaattaactTCAGAATGGGCTTTTTCTGTTAATAAGGGCCTAGGACCATG
TACAAAAATtaggattgagtttcaaaattcaagcaaAGAATGAGTTTTTG
CCACCGTTGTCTGGTAGCAGAAAAGGCCTGGAAATTGACCTGTGTGCAAA
CAAGGTTCAAAGTGCTACTAATGTTTCATATTACTTTTAATAGACTTAGT
TCGACCtttttatcaaaagaatttATTCTACGTTATATAAGCAGTTCAGG
ATTCCCCAGCAAGGCTATTACTGAAGCGTTGCAAGTGGCTTGCTTAAGCA
CTGTGATATAGTGCGCAATATCCCGTTAGGCTTTTATAAAGACTTGACAC
TGTTGTTCAGCAGCATACTTGTTGGTAAATACATTGAAAGTTTTGCATCA
TTCTCAGCTTGAGATGATCACAACGGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTGCTACTAATGTTTCATAT
TACTTTTAATAGACTTAGTTCGACCtttttatcaaaagaatttATTCTAC
GTTATATAAGCAGTTCAGTATTCCCCAGCAAGGCTATTACTGAAGCGTTG
CAAGTGGCTTGCTTAAGCACTGTGATATAGTGCGCAATATCCCGTTAGGC
TTTTTTAAAGACTTGACACTGTTGTTCAGCAGCATACTTGTTGGTAAATA
CATTGAAAGTTTTGCATCATTCTCAGCTTGAGATGATCACAACGGGACGT
TTCACGTCACACAGTTATGTTTGTCACAAATTAAATTGTATGCACAGTTT
TGCTCCTACCTAGAAAGCATCGAACCTTCAAAGACATACTTTTTCTTAGG
ATGATTAAACTAAGAAATGTTAAGTCACATCTGGTCACAGTTGTTTCTAG
ACATCATTGTCATACAAAAGCAacattttcaaatgtaaacgtGATCAAAC
AATACTTTTATCAACCCTTAAAGTGTTAGGAGAATTTAAGGGTTGATAAA
TGTATTTTCCTAATTCTTCTGCTTTTTCCTTTTACTCATTGTTACTCCCT
AACTGAAGCAAATTCTATTTATCACCAAATTTTCAGGAAAGTACGCCCGC
TTACATCTACAAAGAGGTTTATGCAGGAAATCGTTGAGTTTGACATTCGA
CAAACCTGTCACTCAGTTCAGATCAGGATGTTTGATCTACAAGTCTAAAC
GCTTGAATACGCTGAATTTTGTTGTCTCCAAAAGATGTTGCAGAATCAAG
TCTTTTGGCTTCTACGTTAGTTACAAAGGGGCTCCACCCAAACTCGTCGA
TGTCGAAATCCATGGTAAAAGTATCTGCNN Coding sequence (CDS) from alignment at scaffold_423:225434..230163+ >TCONS_00064739 ID=TCONS_00064739|Name=TCONS_00064739|organism=Clytia hemisphaerica|type=CDS|length=2724bp|location=Sequence derived from alignment at scaffold_423:225434..230163+ (Clytia hemisphaerica)
ATGGTCGGTCAACATCGACATTACCATTGGACAAGCATCAGTATGAAGAC
TCTACTTTGCATCCAGGGTTTGTTGGTGatattatgttttcatgcaTCGA
AAGCACAAACAAAGGATTGCAATGAACTGATAACCAACCCTGATGCTTTT
ACAACAAGCCGGCAGTGTCATTTTCCGTTTTATTACCGCCGTAAATGGTA
TTACACTTGTGCCAAGTCCAAGTTGTACAATTTTTGTTCCGTCGATCGTG
TTTATCGTGGAAAGTGGGCTGCTTGCACCAGGGCTACTCCGGACCAATGT
CAGAATCCGTTCTTTTACAAAGGAGTAAAGTATGAAGGGTGTTCAACAAG
ATTCAGTCCAGTCCCTTGGTGTTCATTGGACCGAAATCATAAACGAGGGA
AAAGTAAATTCGCATATTGCCCAAAGAACCTTCCAGGACGAAAGTACGCC
CGCTTACATCTACAAAGAGGTTTATGCAGGAAATCGTTGAGTTTGACATT
CGACAAACCTGTCACTCAGTTCAGATCAGGATGTTTGATCTACAAGTCTA
AACGCTTGAATACGCTGAATTTTGTTGTCTCCAAAAGATGTTGCAGAATC
AAGTCTTTTGGCTTCTACGTTAGTTACAAAGGGGCTCCACCCAAACTCGT
CGATGTCGAAATCCATGGTAAAAGTATCTGCATGGTCGGTCAACATCGAC
ATTACCATTGGACAAGCATCAGTATGAAGACTCTACTTTGCATCCAGGGT
TTGTTGGTGatattatgttttcatgcaTCGAAAGCACAAACAAAGGATTG
CAATGAACTGATAACCAACCCTGATGCTTTTACAACAAGCCGGCAGTGTC
ATTTTCCGTTTTATTACCGCCGTAAATGGTATTACACTTGTGCCAAGTCC
AAGTTGTACAATTTTTGTTCCGTCGATCGTGTTTATCGTGGAAAGTGGGC
TGCTTGCACCAGGGCTACTCCGGACCAATGTCAGAATCCGTTCTTTTACA
AAGGAGTAAAGTATGAAGGGTGTTCAACAAGATTCAGTCCAGTCCCTTGG
TGTTCATTGGACCGAAATCATAAACGAGGGAAAAGTAAATTCGCATATTG
CCCAAAGAACCTTCCAGGACGAAAGTACGCCCGCTTACATCTACAAAGAG
GTTTATGCAGGAAATCGTTGAGTTTGACATTCGACAAACCTGTCACTCAG
TTCAGATCAGGATGTTTGATCTACAAGTCTAAACGCTTGAATACGCTGAA
TTTTGTTGTCTCCAAAAGATGTTGCAGAATCAAGTCTTTTGGCTTCTACG
TTAGTTACAAAGGGGCTCCACCCAAACTCGTCGATGTCGAAATCCATGGT
AAAAGTATCTGCATGGTCGGTCAACATCGACATTACCATTGGACAAGCAT
CAGTATGAAGACTCTACTTTGCATCCAGGGTTTGTTGGTGatattatgtt
ttcatgcaTCGAAAGCACAAACAAAGGATTGCAATGAACTGATAACCAAC
CCTGATGCTTTTACAACAAGCCGGCAGTGTCATTTTCCGTTTTATTACCG
CCGTAAATGGTATTACACTTGTGCCAAGTCCAAGTTGTACAATTTTTGTT
CCGTCGATCGTGTTTATCGTGGAAAGTGGGCTGCTTGCACCAGGGCTACT
CCGGACCAATGTCAGAATCCGTTCTTTTACAAAGGAGTAAAGTATGAAGG
GTGTTCAACAAGATTCAGTCCAGTCCCTTGGTGTTCATTGGACCGAAATC
ATAAACGAGGGAAAAGTAAATTCGCATATTGCCCAAAGAACCTTCCAGGA
CGAAAGTACGCCCGCTTACATCTACAAAGAGGTTTATGCAGGAAATCGTT
GAGTTTGACATTCGACAAACCTGTCACTCAGTTCAGATCAGGATGTTTGA
TCTACAAGTCTAAACGCTTGAATACGCTGAATTTTGTTGTCTCCAAAAGA
TGTTGCAGAATCAAGTCTTTTGGCTTCTACGTTAGTTACAAAGGGGCTCC
ACCCAAACTCGTCGATGTCGAAATCCATGGTAAAAGTATCTGCATGGTCG
GTCAACATCGACATTACCATTGGACAAGCATCAGTATGAAGACTCTACTT
TGCATCCAGGGTTTGTTGGTGatattatgttttcatgcaTCGAAAGCACA
AACAAAGGATTGCAATGAACTGATAACCAACCCTGATGCTTTTACAACAA
GCCGGCAGTGTCATTTTCCGTTTTATTACCGCCGTAAATGGTATTACACT
TGTGCCAAGTCCAAGTTGTACAATTTTTGTTCCGTCGATCGTGTTTATCG
TGGAAAGTGGGCTGCTTGCACCAGGGCTACTCCGGACCAATGTCAGAATC
CGTTCTTTTACAAAGGAGTAAAGTATGAAGGGTGTTCAACAAGATTCAGT
CCAGTCCCTTGGTGTTCATTGGACCGAAATCATAAACGAGGGAAAAGTAA
ATTCGCATATTGCCCAAAGAACCTTCCAGGACGAAAGTACGCCCGCTTAC
ATCTACAAAGAGGTTTATGCAGGAAATCGTTGAGTTTGACATTCGACAAA
CCTGTCACTCAGTTCAGATCAGGATGTTTGATCTACAAGTCTAAACGCTT
GAATACGCTGAATTTTGTTGTCTCCAAAAGATGTTGCAGAATCAAGTCTT
TTGGCTTCTACGTTAGTTACAAAGGGGCTCCACCCAAACTCGTCGATGTC
GAAATCCATGGTAAAAGTATCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064739-exon-scaffold_423-1491911889:225434..225604 | TCONS_00064739-exon-scaffold_423-1491911889:225434..225604 | Clytia hemisphaerica | exon |
| TCONS_00064739-exon-scaffold_423-1510915933:225434..225604 | TCONS_00064739-exon-scaffold_423-1510915933:225434..225604 | Clytia hemisphaerica | exon |
| TCONS_00064739-exon-scaffold_423-1575043694:225434..225604 | TCONS_00064739-exon-scaffold_423-1575043694:225434..225604 | Clytia hemisphaerica | exon |
| TCONS_00064739-exon-scaffold_423-1491911889:227793..227924 | TCONS_00064739-exon-scaffold_423-1491911889:227793..227924 | Clytia hemisphaerica | exon |
| TCONS_00064739-exon-scaffold_423-1510915933:227793..227924 | TCONS_00064739-exon-scaffold_423-1510915933:227793..227924 | Clytia hemisphaerica | exon |
| TCONS_00064739-exon-scaffold_423-1575043694:227793..227924 | TCONS_00064739-exon-scaffold_423-1575043694:227793..227924 | Clytia hemisphaerica | exon |
| TCONS_00064739-exon-scaffold_423-1491911889:228425..228574 | TCONS_00064739-exon-scaffold_423-1491911889:228425..228574 | Clytia hemisphaerica | exon |
| TCONS_00064739-exon-scaffold_423-1510915933:228425..228574 | TCONS_00064739-exon-scaffold_423-1510915933:228425..228574 | Clytia hemisphaerica | exon |
| TCONS_00064739-exon-scaffold_423-1575043694:228425..228574 | TCONS_00064739-exon-scaffold_423-1575043694:228425..228574 | Clytia hemisphaerica | exon |
| TCONS_00064739-exon-scaffold_423-1491911889:229920..230163 | TCONS_00064739-exon-scaffold_423-1491911889:229920..230163 | Clytia hemisphaerica | exon |
| TCONS_00064739-exon-scaffold_423-1510915933:229920..230163 | TCONS_00064739-exon-scaffold_423-1510915933:229920..230163 | Clytia hemisphaerica | exon |
| TCONS_00064739-exon-scaffold_423-1575043694:229920..230163 | TCONS_00064739-exon-scaffold_423-1575043694:229920..230163 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_423 | supercontig | scaffold_423:225434..230163 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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