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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064725 ID=TCONS_00064725|Name=TCONS_00064725|organism=Clytia hemisphaerica|type=transcript|length=2130bp
ttaCGTCTttgttaaattaattttttgaaagtgttaaATGGttttggatt
tacgaaaattatTCATAGAGTTTGActtattttttacagaaaaataaaga
aaatacaaaatatttcatatttcctCGATGGAATTTTGAACCAGACGTTT
TGGTAACAGTTGATTTCAACTGAATGAATAACTGACAAACCAACAAATTT
ACTGAACTAAAACGACACAAGAATGAAACCTGTACTACATTTGATCTTTC
TGTCTCTTCTTATTTCTTGCACCTACGCAAGTTTACTTGACTTTTTACGA
CTCGAACGAAAACGACGACAATTTGACTGTTGTTCACCACCTGCTATCAC
CACATGCTGTGCTGCTGAAAATAACGCCGCTATGATGGCGGCACCAATGG
CTGAAGCTGCCACTCCATTGAGTTGTTGTGCACCGCCAGCAATCACAACT
TGCTGTGACACAACAGGTGCTNCAGCTGCCGCTCCATTGAGTTGTTGTGC
ACCGCCAGCAATCACAACTTGCTGTGACACAACAGGTGCTGCAGCAGCCC
CAGCGGCTCAACCGACCGCATCAATGGACGAAGAAAGCAGAGATATGTTT
AATGCATGGAATGCACCAGTCAGTTTAGGAGTCTTCATCAATCCAGAAGC
TACTCCAGATGATACCGGAAAAGCCTCAAAGCGTACGGAGACACCCTTCC
ATCAAAGTGAAGGAAGTGGATCAGGCAGTGGTGGCTCTTTCTTCGCTTCA
GATAGTGCTAAAAGAGATGAAGTTCCAAAACCAGTCGAAGATAAGAAACC
AGAGGAAAAGAAAGATGAAAACGTTAAGAAAAGCACCATTGAAACCGTTC
CAACTTCCACCAAAAATATTGCCATTCAAGCTGAAAAGAAAACCACGATT
GAGAGCAATGAACGGAAATCAGAATTGAGCGCCAAAGCTTCCAAAATTGA
AGAAGTACAAGGTGAAAAGAACGAGAAGCGCCAAACCACAGTCACGTGTC
AAGGTCAAAAAGATTGGTTACAATGTCCAACATACCAATTAATCAAGATC
AAAGATGCTTTCTGGGGACGAGATGATGAAAAAACCTGCACCAGGTCACA
TACCGAGCGTTCAATCTCAGCGAACAAAATGTGCGCTCAAGACGAAAGTA
ACACCATGGCTAAATTACAGAACGCATGTGATGGAGAGAGCGCGTGCGAA
TTGGTCGCTTCGCCTGTTTATTTTGACCGCACGGACTGTCCAGATGTTTA
TAAGTTTTTGAGAGTGGATTGGGAATGTGACCATAGTGAGTCGAGAATCA
AGAGTAAATAAATTGATCATACTTTATCAGTACAATTAAATAGATCTTAT
ATTAAATCCTTGGACATTAATAGAGTTTGGTGTGTTAGATTATGCTGATT
CATCATATGACGTAAAGCAATACAAGCCAAACGTAAATTTCCTCCAAATA
TTGAGATCTGGAAACATGTAGACAGTCTACTCTCTAATTAGTTTacgtca
aatgaaaatttagataGTTTTAcacaaaatgcaaaaacacACTTTGGGGA
ACGGAAAAAGCTATTCATTTTCTTCCCTTTACGGAGTATCTGAAACCATT
GATTTCAatgccccgaaggggctaggttcaaaatgaagccatttaaTTCC
CATCCAGAAAACTTGACTCGCGTGTTTTTCTTCTAAATGCGGGGCAAACT
TaaggtttcatttttttttgcttgagaaaagTTAAAGATCTCTCTCTAGC
CCCTTCAGAGCTTCAAAGTCAATGTCTAAAAGTTGAAGAAGTGGATAATT
GAATAGACTCTGTCCGTTATTCTAAGATTACCCAAATTTTCATAATGTAC
ACTAATTAGAGAGTTTATTGCATGTGTTTTGTGCATGGATGTATAAAGAA
AGTATGGCAGAACATCGGAAGAGATTACTATGCGAGTTATGCCTCTTCTC
TCCTTGACATGAACTCTGGTGGAAAATTTTCCCATCTCTTtatgaaatga
atttttgtttataaaaaaatcatgaatATATTTTTGGTAGAAGTTTTTAT
GATAAAACCCCTTTTTGTATAACATTTGTAGATTATTGTGTTTccatgaa
aaaagattttatattCCAGAGTGAAAACAT Run BLAST on NCBI protein sequence of TCONS_00064725-protein >TCONS_00064725-protein ID=TCONS_00064725-protein|Name=TCONS_00064725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MKPVLHLIFLSLLISCTYASLLDFLRLERKRRQFDCCSPPAITTCCAAEN
NAAMMAAPMAEAATPLSCCAPPAITTCCDTTGAXAAAPLSCCAPPAITTC
CDTTGAAAAPAAQPTASMDEESRDMFNAWNAPVSLGVFINPEATPDDTGK
ASKRTETPFHQSEGSGSGSGGSFFASDSAKRDEVPKPVEDKKPEEKKDEN
VKKSTIETVPTSTKNIAIQAEKKTTIESNERKSELSAKASKIEEVQGEKN
EKRQTTVTCQGQKDWLQCPTYQLIKIKDAFWGRDDEKTCTRSHTERSISA
NKMCAQDESNTMAKLQNACDGESACELVASPVYFDRTDCPDVYKFLRVDW
ECDHSESRIKSK Run BLAST on NCBI transcript from alignment at scaffold_423:109151..112225+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064725 ID=TCONS_00064725|Name=TCONS_00064725|organism=Clytia hemisphaerica|type=transcript|length=3075bp|location=Sequence derived from alignment at scaffold_423:109151..112225+ (Clytia hemisphaerica)
ttaCGTCTttgttaaattaattttttgaaagtgttaaATGGttttggatt
tacgaaaattatTCATAGAGTTTGActtattttttacagaaaaataaaga
aaatacaaaatatttcatatttcctCGATGGAATTTTGAACCAGACGTTT
TGGTAACAGGTTAGTTTACTTAAAACGTTTGTTTAACTTGGTTGCGgttt
aaagaaatgaaaaggtttGTCTGGTTAGGTTGGTTAGGATCTCaaataca
aataaaaaactttatgaTATATGATATACTATATACAGCCTCACCGCTTC
TCCTTGCATTATAAccttgaattttttgttttgggaGCATTCGCATTGag
gattttttctttctttttcaattcaTATCATTCGCGAagagatatttttc
aattaaacTATCAACTTAACTGGTGtttcttttgtaaaagtttGGATAAA
ATACAAAGGCGATGGAGCGGTCTTTAGtggaatttctaaaatttgacttt
cagTGCTAAGGGGTAAAGACCCTATTACTAAATATATCTCTCTTTTCTGT
CTCGTTTTAGTTGATTTCAACTGAATGAATAACTGACAAACCAACAAATT
TACTGAACTAAAACGACACAAGAATGAAACCTGTACTACATTTGATCTTT
CTGTCTCTTCTTATTTCTTGCACCGTGAGTAAACCTTCTCAGAATTTTAT
ttcacaaatttacaaatttataaATTAATTTCAGCATTAGTGTTGGACCA
GCTACGTTAACTAAGCACttgaaactaaaaatattgctatatttttttta
aataaaactgATTCGATGGATTGATTGAAGGTCTTCGGTTGAGTTTTAAG
GTACTCATCTCTTGACAAAGCTTTTCTATAACATTTTTACAGTACGCAAG
TTTACTTGACTTTTTACGACTCGAACGAAAACGACGACAATTTGACTGTT
GTTCACCACCTGCTATCACCACATGCTGTGCTGCTGAAAATAACGCCGCT
ATGATGGCGGCACCAATGGCTGAAGCTGCCACTCCATTGAGTTGTTGTGC
ACCGCCAGCAATCACAACTTGCTGTGACACAACAGGTGCTNCAGCTGCCG
CTCCATTGAGTTGTTGTGCACCGCCAGCAATCACAACTTGCTGTGACACA
ACAGGTGCTGCAGCAGCCCCAGCGGCTCAACCGACCGCATCAATGGACGA
AGAAAGCAGAGATATGTTTAATGCATGGAATGCACCAGTCAGTTTAGGAG
TCTTCATCAATCCAGAAGCTACTCCAGATGATACCGGAAAAGCCTCAAAG
CGTACGGAGACACCCTTCCATCAAAGTGAAGGAAGTGGATCAGGCAGTGG
TGGCTCTTTCTTCGCTTCAGATAGTGCTAAAAGAGATGAAGTTCCAAAAC
CAGTCGAAGATAAGAAACCAGAGGAAAAGAAAGATGAAAACGTTAAGAAA
AGCACCATTGAAACCGTTCCAACTTCCACCAAAAATATTGCCATTCAAGC
TGAAAAGAAAACCACGATTGAGAGCAATGAACGGAAATCAGAATTGAGCG
CCAAAGCTTCCAAAATTGAAGAAGTACAAGGTGAAAAGAACGAGAAGGTG
AGAAAGCTTTTTCTTTTCGAATCTGTCATATTGAATTTTGTTTCTCTCCA
AAGCTAAAGCGTAAGTCAGGTGCCAGAGTTCGTGTAGGATAGAAGTTGTA
TGtgtatttttgaatgaaaattaattgtAAATTTGGTCATCACCATCTCG
TGTGTTCTTGTGTTAGAAATTTCTTAGCGCAATTTTCTTTGGCTTTTCGA
TAAAAAAGGTGTACTTGGGGTAGCTGTTACAAGTCTTAAGCCTCTAGAGG
TTATCTTATAATAATTTTAGGCTAACTTTGCTGAAGATATTTCACCTAAA
ACTTTCTATTCCTTTACTTCCAGCGCCAAACCACAGTCACGTGTCAAGGT
CAAAAAGATTGGTTACAATGTCCAACATACCAATTAATCAAGATCAAAGA
TGCTTTCTGGGGACGAGATGATGAAAAAACCTGCACCAGGTCACATACCG
AGCGTTCAATCTCAGCGAACAAAATGTGCGCTCAAGACGAAAGTAACACC
ATGGCTAAATTACAGAACGCATGTGATGGAGAGAGCGCGTGCGAATTGGT
CGCTTCGCCTGTTTATTTTGACCGCACGGACTGTCCAGATGTTTATAAGT
TTTTGAGAGTGGATTGGGAATGTGACCATAGTGAGTCGAGAATCAAGAGT
AAATAAATTGATCATACTTTATCAGTACAATTAAATAGATCTTATATTAA
ATCCTTGGACATTAATAGAGTTTGGTGTGTTAGATTATGCTGATTCATCA
TATGACGTAAAGCAATACAAGCCAAACGTAAATTTCCTCCAAATATTGAG
ATCTGGAAACATGTAGACAGTCTACTCTCTAATTAGTTTacgtcaaatga
aaatttagataGTTTTAcacaaaatgcaaaaacacACTTTGGGGAACGGA
AAAAGCTATTCATTTTCTTCCCTTTACGGAGTATCTGAAACCATTGATTT
CAatgccccgaaggggctaggttcaaaatgaagccatttaaTTCCCATCC
AGAAAACTTGACTCGCGTGTTTTTCTTCTAAATGCGGGGCAAACTTaagg
tttcatttttttttgcttgagaaaagTTAAAGATCTCTCTCTAGCCCCTT
CAGAGCTTCAAAGTCAATGTCTAAAAGTTGAAGAAGTGGATAATTGAATA
GACTCTGTCCGTTATTCTAAGATTACCCAAATTTTCATAATGTACACTAA
TTAGAGAGTTTATTGCATGTGTTTTGTGCATGGATGTATAAAGAAAGTAT
GGCAGAACATCGGAAGAGATTACTATGCGAGTTATGCCTCTTCTCTCCTT
GACATGAACTCTGGTGGAAAATTTTCCCATCTCTTtatgaaatgaatttt
tgtttataaaaaaatcatgaatATATTTTTGGTAGAAGTTTTTATGATAA
AACCCCTTTTTGTATAACATTTGTAGATTATTGTGTTTccatgaaaaaag
attttatattCCAGAGTGAAAACAT Coding sequence (CDS) from alignment at scaffold_423:109151..112225+ >TCONS_00064725 ID=TCONS_00064725|Name=TCONS_00064725|organism=Clytia hemisphaerica|type=CDS|length=3267bp|location=Sequence derived from alignment at scaffold_423:109151..112225+ (Clytia hemisphaerica)
ATGAAACCTGTACTACATTTGATCTTTCTGTCTCTTCTTATTTCTTGCAC
CTACGCAAGTTTACTTGACTTTTTACGACTCGAACGAAAACGACGACAAT
TTGACTGTTGTTCACCACCTGCTATCACCACATGCTGTGCTGCTGAAAAT
AACGCCGCTATGATGGCGGCACCAATGGCTGAAGCTGCCACTCCATTGAG
TTGTTGTGCACCGCCAGCAATCACAACTTGCTGTGACACAACAGGTGCTN
CAGCTGCCGCTCCATTGAGTTGTTGTGCACCGCCAGCAATCACAACTTGC
TGTGACACAACAGGTGCTGCAGCAGCCCCAGCGGCTCAACCGACCGCATC
AATGGACGAAGAAAGCAGAGATATGTTTAATGCATGGAATGCACCAGTCA
GTTTAGGAGTCTTCATCAATCCAGAAGCTACTCCAGATGATACCGGAAAA
GCCTCAAAGCGTACGGAGACACCCTTCCATCAAAGTGAAGGAAGTGGATC
AGGCAGTGGTGGCTCTTTCTTCGCTTCAGATAGTGCTAAAAGAGATGAAG
TTCCAAAACCAGTCGAAGATAAGAAACCAGAGGAAAAGAAAGATGAAAAC
GTTAAGAAAAGCACCATTGAAACCGTTCCAACTTCCACCAAAAATATTGC
CATTCAAGCTGAAAAGAAAACCACGATTGAGAGCAATGAACGGAAATCAG
AATTGAGCGCCAAAGCTTCCAAAATTGAAGAAGTACAAGGTGAAAAGAAC
GAGAAGCGCCAAACCACAGTCACGTGTCAAGGTCAAAAAGATTGGTTACA
ATGTCCAACATACCAATTAATCAAGATCAAAGATGCTTTCTGGGGACGAG
ATGATGAAAAAACCTGCACCAGGTCACATACCGAGCGTTCAATCTCAGCG
AACAAAATGTGCGCTCAAGACGAAAGTAACACCATGGCTAAATTACAGAA
CGCATGTGATGGAGAGAGCGCGTGCGAATTGGTCGCTTCGCCTGTTTATT
TTGACCGCACGGACTGTCCAGATGTTTATAAGTTTTTGAGAGTGGATTGG
GAATGTGACCATAGTGAGTCGAGAATCAAGAGTAAATAAATGAAACCTGT
ACTACATTTGATCTTTCTGTCTCTTCTTATTTCTTGCACCTACGCAAGTT
TACTTGACTTTTTACGACTCGAACGAAAACGACGACAATTTGACTGTTGT
TCACCACCTGCTATCACCACATGCTGTGCTGCTGAAAATAACGCCGCTAT
GATGGCGGCACCAATGGCTGAAGCTGCCACTCCATTGAGTTGTTGTGCAC
CGCCAGCAATCACAACTTGCTGTGACACAACAGGTGCTNCAGCTGCCGCT
CCATTGAGTTGTTGTGCACCGCCAGCAATCACAACTTGCTGTGACACAAC
AGGTGCTGCAGCAGCCCCAGCGGCTCAACCGACCGCATCAATGGACGAAG
AAAGCAGAGATATGTTTAATGCATGGAATGCACCAGTCAGTTTAGGAGTC
TTCATCAATCCAGAAGCTACTCCAGATGATACCGGAAAAGCCTCAAAGCG
TACGGAGACACCCTTCCATCAAAGTGAAGGAAGTGGATCAGGCAGTGGTG
GCTCTTTCTTCGCTTCAGATAGTGCTAAAAGAGATGAAGTTCCAAAACCA
GTCGAAGATAAGAAACCAGAGGAAAAGAAAGATGAAAACGTTAAGAAAAG
CACCATTGAAACCGTTCCAACTTCCACCAAAAATATTGCCATTCAAGCTG
AAAAGAAAACCACGATTGAGAGCAATGAACGGAAATCAGAATTGAGCGCC
AAAGCTTCCAAAATTGAAGAAGTACAAGGTGAAAAGAACGAGAAGCGCCA
AACCACAGTCACGTGTCAAGGTCAAAAAGATTGGTTACAATGTCCAACAT
ACCAATTAATCAAGATCAAAGATGCTTTCTGGGGACGAGATGATGAAAAA
ACCTGCACCAGGTCACATACCGAGCGTTCAATCTCAGCGAACAAAATGTG
CGCTCAAGACGAAAGTAACACCATGGCTAAATTACAGAACGCATGTGATG
GAGAGAGCGCGTGCGAATTGGTCGCTTCGCCTGTTTATTTTGACCGCACG
GACTGTCCAGATGTTTATAAGTTTTTGAGAGTGGATTGGGAATGTGACCA
TAGTGAGTCGAGAATCAAGAGTAAATAAATGAAACCTGTACTACATTTGA
TCTTTCTGTCTCTTCTTATTTCTTGCACCTACGCAAGTTTACTTGACTTT
TTACGACTCGAACGAAAACGACGACAATTTGACTGTTGTTCACCACCTGC
TATCACCACATGCTGTGCTGCTGAAAATAACGCCGCTATGATGGCGGCAC
CAATGGCTGAAGCTGCCACTCCATTGAGTTGTTGTGCACCGCCAGCAATC
ACAACTTGCTGTGACACAACAGGTGCTNCAGCTGCCGCTCCATTGAGTTG
TTGTGCACCGCCAGCAATCACAACTTGCTGTGACACAACAGGTGCTGCAG
CAGCCCCAGCGGCTCAACCGACCGCATCAATGGACGAAGAAAGCAGAGAT
ATGTTTAATGCATGGAATGCACCAGTCAGTTTAGGAGTCTTCATCAATCC
AGAAGCTACTCCAGATGATACCGGAAAAGCCTCAAAGCGTACGGAGACAC
CCTTCCATCAAAGTGAAGGAAGTGGATCAGGCAGTGGTGGCTCTTTCTTC
GCTTCAGATAGTGCTAAAAGAGATGAAGTTCCAAAACCAGTCGAAGATAA
GAAACCAGAGGAAAAGAAAGATGAAAACGTTAAGAAAAGCACCATTGAAA
CCGTTCCAACTTCCACCAAAAATATTGCCATTCAAGCTGAAAAGAAAACC
ACGATTGAGAGCAATGAACGGAAATCAGAATTGAGCGCCAAAGCTTCCAA
AATTGAAGAAGTACAAGGTGAAAAGAACGAGAAGCGCCAAACCACAGTCA
CGTGTCAAGGTCAAAAAGATTGGTTACAATGTCCAACATACCAATTAATC
AAGATCAAAGATGCTTTCTGGGGACGAGATGATGAAAAAACCTGCACCAG
GTCACATACCGAGCGTTCAATCTCAGCGAACAAAATGTGCGCTCAAGACG
AAAGTAACACCATGGCTAAATTACAGAACGCATGTGATGGAGAGAGCGCG
TGCGAATTGGTCGCTTCGCCTGTTTATTTTGACCGCACGGACTGTCCAGA
TGTTTATAAGTTTTTGAGAGTGGATTGGGAATGTGACCATAGTGAGTCGA
GAATCAAGAGTAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064725-exon-scaffold_423-1491911889:109151..109309 | TCONS_00064725-exon-scaffold_423-1491911889:109151..109309 | Clytia hemisphaerica | exon |
| TCONS_00064725-exon-scaffold_423-1510915933:109151..109309 | TCONS_00064725-exon-scaffold_423-1510915933:109151..109309 | Clytia hemisphaerica | exon |
| TCONS_00064725-exon-scaffold_423-1575043694:109151..109309 | TCONS_00064725-exon-scaffold_423-1575043694:109151..109309 | Clytia hemisphaerica | exon |
| TCONS_00064725-exon-scaffold_423-1491911889:109711..109824 | TCONS_00064725-exon-scaffold_423-1491911889:109711..109824 | Clytia hemisphaerica | exon |
| TCONS_00064725-exon-scaffold_423-1510915933:109711..109824 | TCONS_00064725-exon-scaffold_423-1510915933:109711..109824 | Clytia hemisphaerica | exon |
| TCONS_00064725-exon-scaffold_423-1575043694:109711..109824 | TCONS_00064725-exon-scaffold_423-1575043694:109711..109824 | Clytia hemisphaerica | exon |
| TCONS_00064725-exon-scaffold_423-1491911889:110043..110747 | TCONS_00064725-exon-scaffold_423-1491911889:110043..110747 | Clytia hemisphaerica | exon |
| TCONS_00064725-exon-scaffold_423-1510915933:110043..110747 | TCONS_00064725-exon-scaffold_423-1510915933:110043..110747 | Clytia hemisphaerica | exon |
| TCONS_00064725-exon-scaffold_423-1575043694:110043..110747 | TCONS_00064725-exon-scaffold_423-1575043694:110043..110747 | Clytia hemisphaerica | exon |
| TCONS_00064725-exon-scaffold_423-1491911889:111074..112225 | TCONS_00064725-exon-scaffold_423-1491911889:111074..112225 | Clytia hemisphaerica | exon |
| TCONS_00064725-exon-scaffold_423-1510915933:111074..112225 | TCONS_00064725-exon-scaffold_423-1510915933:111074..112225 | Clytia hemisphaerica | exon |
| TCONS_00064725-exon-scaffold_423-1575043694:111074..112225 | TCONS_00064725-exon-scaffold_423-1575043694:111074..112225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_423 | supercontig | scaffold_423:109151..112225 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000922 | Lectin_gal-bd_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030246 | carbohydrate binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0030246 |
carbohydrate binding |
Blast
The following BLAST results are available for this feature:
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