TCONS_00064721 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064721
Unique NameTCONS_00064721
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length512

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064721 ID=TCONS_00064721|Name=TCONS_00064721|organism=Clytia hemisphaerica|type=transcript|length=512bp
GTGGAATTCGTCATTTGCAAACTTGGTTAATATAGCGTCAGTTCATGTAT
CCCGTAGTTCTCTACAGAAGTGGAGATTCAAAGTAAAGGTCAACACTTTT
GGTTTAATTCCATTTGAAGCTCTCTAGCTTGGTTTTAATCAGGATTTGTT
TGTGTACCGTGTTTAATGCCTTTGTCAGAGTTTCAAATACCtattttttt
tcctttgtttcaggTTTTATACTAAATGCAATGATTGGTATCATGCACAG
CGTGGTCAATAATACAATAATATATACACGCATTCGCTATCATAACCCAT
AATGCAGAGAATCTGGCGGAATCATTTACGTTGCATATTTTACGGATAAA
AGcgtgaaatttttagaatttttaatttatttgaagATAAATAACACCGT
CCTctataaaaatgtaaataatgGAATTTTAAAGGGAAAGATAATGTACA
TTCATTAAATATGAAATGTTTATTATTTAAAAAGCTCTCGCTAATTCAAA
CTCTAACTACAG
Run BLAST on NCBI

transcript from alignment at scaffold_423:100309..100820+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064721 ID=TCONS_00064721|Name=TCONS_00064721|organism=Clytia hemisphaerica|type=transcript|length=512bp|location=Sequence derived from alignment at scaffold_423:100309..100820+ (Clytia hemisphaerica)
GTGGAATTCGTCATTTGCAAACTTGGTTAATATAGCGTCAGTTCATGTAT
CCCGTAGTTCTCTACAGAAGTGGAGATTCAAAGTAAAGGTCAACACTTTT
GGTTTAATTCCATTTGAAGCTCTCTAGCTTGGTTTTAATCAGGATTTGTT
TGTGTACCGTGTTTAATGCCTTTGTCAGAGTTTCAAATACCtattttttt
tcctttgtttcaggTTTTATACTAAATGCAATGATTGGTATCATGCACAG
CGTGGTCAATAATACAATAATATATACACGCATTCGCTATCATAACCCAT
AATGCAGAGAATCTGGCGGAATCATTTACGTTGCATATTTTACGGATAAA
AGcgtgaaatttttagaatttttaatttatttgaagATAAATAACACCGT
CCTctataaaaatgtaaataatgGAATTTTAAAGGGAAAGATAATGTACA
TTCATTAAATATGAAATGTTTATTATTTAAAAAGCTCTCGCTAATTCAAA
CTCTAACTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040596XLOC_040596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064721-exon-scaffold_423-1491911889:100309..100820TCONS_00064721-exon-scaffold_423-1491911889:100309..100820Clytia hemisphaericaexon
TCONS_00064721-exon-scaffold_423-1510915933:100309..100820TCONS_00064721-exon-scaffold_423-1510915933:100309..100820Clytia hemisphaericaexon
TCONS_00064721-exon-scaffold_423-1575043694:100309..100820TCONS_00064721-exon-scaffold_423-1575043694:100309..100820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_423supercontigscaffold_423:100309..100820 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15054	0.817132	2.09963	4.5701	0	0	0	0	0.282601	0.176756	0	0.36445	0	0	0	0.0989942	0	0.278374	0.361181	0	0.451629	0.899072	0.340886	1.56535	0	0.461015	0.588161	0	0.59634	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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