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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064720 ID=TCONS_00064720|Name=TCONS_00064720|organism=Clytia hemisphaerica|type=transcript|length=1952bpRun BLAST on NCBI protein sequence of TCONS_00064720-protein >TCONS_00064720-protein ID=TCONS_00064720-protein|Name=TCONS_00064720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp MDGGGDGSPRRDMDQPQPPSAPPVDTSVSDLLKAAEEGGATQDNGGGDGVRun BLAST on NCBI transcript from alignment at scaffold_423:69381..100798+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064720 ID=TCONS_00064720|Name=TCONS_00064720|organism=Clytia hemisphaerica|type=transcript|length=31418bp|location=Sequence derived from alignment at scaffold_423:69381..100798+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_423:69381..100798+ >TCONS_00064720 ID=TCONS_00064720|Name=TCONS_00064720|organism=Clytia hemisphaerica|type=CDS|length=23808bp|location=Sequence derived from alignment at scaffold_423:69381..100798+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064720 vs. Swiss-Prot (Human)
Match: BBS4 (Bardet-Biedl syndrome 4 protein OS=Homo sapiens GN=BBS4 PE=1 SV=2) HSP 1 Score: 478.019 bits (1229), Expect = 2.093e-161 Identity = 242/430 (56.28%), Postives = 323/430 (75.12%), Query Frame = 2
Query: 386 EQKVSTR------------RPGRAPDIPVFERRNWLIHMHYVRKDYDTCKALIEESLMESHGTCEYALYVKALILREEGDIQQSLDVFQICVQYNSNNPDNLKQVARSLFLLGRHKASLQVYKEASKLSIDDWEIFHNQGVCLMYLKQFERAKELLRKALHTSRHDITYMMLGKCYLMENDLMGATEVFKKAIEFSPENVDLMTTLGVLYLQTGHNQRAFDQFGSSLTYEVTNVKAILAAGAMIQDKGDFEVALVKYRTAATQIPESPQLWNNVGMCFFGKKKYVAAISCLKHAAFLAPFEWTIMHNLGLVFLAMSQYASAFHYLSAAITLKPKIAKLFMLLAVALTYLDSMEDAQKAYEQAIQLNG-DHMVHLNYAVFLNKISMQRAASQQLSMYKKKLEATQNI----IDPEAKGVAARLEVALQVGE 1624
E++V+TR R +AP+ P+ E++NWLIH+HY+RKDY+ CKA+I+E L E+ G CEYA+YV+ALI R EG+IQ+SL++FQ C + + DNLKQVARSLFLLG+HKA+++VY EA+KL+ DWEI HN GVC +YLKQF +A++ L AL+ +RHD+TY+MLGK +L+E DL A EV+KKA+EFSPEN +L+TTLG+LYLQ G Q+AF+ G++LTY+ TN KAILAAG+M+Q GDF+VAL KYR A +PESP LWNN+GMCFFGKKKYVAAISCLK A +LAPF+W I++NLGLV L M QYASAFH+LSAAI +PK+ +L+MLLAVALT L+ +E+A++AY +A+ L+ + +V+LNYAV L ++ A Q +KK+ ++ D E +A +L ALQVGE
Sbjct: 3 EERVATRTQFPVSTESQKPRQKKAPEFPILEKQNWLIHLHYIRKDYEACKAVIKEQLQETQGLCEYAIYVQALIFRLEGNIQESLELFQTCAVLSPQSADNLKQVARSLFLLGKHKAAIEVYNEAAKLNQKDWEISHNLGVCYIYLKQFNKAQDQLHNALNLNRHDLTYIMLGKIHLLEGDLDKAIEVYKKAVEFSPENTELLTTLGLLYLQLGIYQKAFEHLGNALTYDPTNYKAILAAGSMMQTHGDFDVALTKYRVVACAVPESPPLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMQQYASAFHFLSAAINFQPKMGELYMLLAVALTNLEDIENAKRAYAEAVHLDKCNPLVNLNYAVLLYNQGEKKNALAQYQEMEKKVSLLKDNSSLEFDSEMVEMAQKLGAALQVGE 432 The following BLAST results are available for this feature:
BLAST of TCONS_00064720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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