TCONS_00064718 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064718
Unique Name	TCONS_00064718
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1957

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_423:53984..61367+

transcript sequence

>TCONS_00064718 ID=TCONS_00064718|Name=TCONS_00064718|organism=Clytia hemisphaerica|type=transcript|length=1957bp
CTTTTCTTCTCATGTCGGATACAGACCGTAAGTTCTCGTCTTCGGctcta
aaatgttgtttttacaTCACACTGGCAAGAAAACTTGGCCTCGATGTCAA
TGCTGTTAGGattgaTGATACCAGTGCtcgaaaaagtcaattttttacaT
CAATAAAACCAAGCATCGGGTATCTAATTCTTGTTGACTTTATTATACCT
ACTGAGTGCGCCAAGAGAAAAGACACaatttacattgaatttcgTTCTGG
TATGTTAAAGATGGTTGATGAACAAAGTAATCTCCTTGCTAGACTTAAAG
CAACTGAAAATGCTACCAAAAAAGATATCTTCGTATGTTTACTGCACGAT
GTGATTGAGTTTTATAAACACGGAGGACAAATTAGTGGCAGgcAAATCCA
GAAGATTCAATGGCTCATTGAAACACTTTTACAACTTTCACCTACAGAAG
ATGAATCTAGGTTGTTTTTGACACGGATTTATTTACACCAAAACTCCAAC
ATAGATGAGACATTGGAACATTTGACTTATTTAATATCTCATGGGAATTT
GCCAAGTGAACCAATACATCAATTGTTAACTGTCACCAAACGTCTCGAGG
AAGAGAAAAAGAACGAAGAAAAAACTCAACCAAAACTGAGATCGTCTACA
GAAGACAACCAAAAGGTGGTGTACAAGATCGGAATGATCATGAGACATCG
AAGGCTTGGGTACATGTGTGTTATATACGGTTGGGACAATTTTTGTGATA
TGCCGTATAATTGGCAACGTCAGATGGGCGTTTTAGATATGTTGAATGGT
CCTAATCAACCTTTCTACAACGTCATGGTCAATGATGGTTCCAACAGATA
TGCAGCTCAAGAAAGTTTGATGATGCACGCAAATCCTGGTGAAATCGCTC
ACGAAGAGATTGGCAAATACTTCTGCTCAATCATCAATAGCTGTTACTAT
AAACCCACTGAAATGTTGAATGAAATGTACCCTGAGGATTGCGATTGGTT
TGGATGCCCAGATGTTTGATTAATGGATTAGCATGATGCTTCCTGACTTT
ATGTAGTGCAGTATCTTATGATTGATGAGATATCTCATTTGAGGACAAAA
GTAATCATCTTAAATGATTGTATATTCCACTCCCTGTTGAGGAGCTCCAA
CCTTTTTGTGAACTACCCCTTGGAATTCCAAGCAATTTTAGAATTATACT
CCTCTGGATTTccgaacttttccaaatttttaatcattacccccatggaa
ttgcgcttatttttgacggatttttgtttactgctatggaattccactgt
aTTTCAAACCATAACCCCTTGGAATGGAAATGAACCTCCTcgacaggggg
tgcacggtttttttctggaaaaacccgATGAAAAGAATTAAACCACAAGG
CTACGGATGACGTAACGTAACTTTTTGGTTGAGTATTATGTTTAACGGGA
TACTTTTCTTGAAAACAAGTAAAAGTAACTCGCATATGGCATAAATAGTG
AGTTTATGCATGTGTGTtattcagcgacggagacggttagaTTCTGATTT
GTCTAGACCCTGATCAACCGAGAACGACGGTAAACAAGCATATTTACTGG
TCCACGAATTAGAACTGCGtattattccaaatcgcttcagtcacaacgcc
gtcctcaaaagtacaAAACATGAAATTGGTAGTGTTTGATGgcaaggtct
gtaaattatgtTTTCAATGTTAAAATACTAAGATATGGTTTATAATAATG
AATACGAGATTCGTTTCGCCCGAGGACGAAATCATCAAGTAAAAGTGAAT
GTATTACACAAAATGaatataaaaaatgattgaTTACAATTAGTTTGGTT
TAAACAGATTCAATCATTGAGCCTTCCCTTCGTATTAAAAAGAAACAAGC
CAATAAAAACCTTTCGTTTATTAAGAACCGTTTGATATGGTAAATATTTG
GTATAGA

Run BLAST on NCBI

transcript from alignment at scaffold_423:53984..61367+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064718 ID=TCONS_00064718|Name=TCONS_00064718|organism=Clytia hemisphaerica|type=transcript|length=7384bp|location=Sequence derived from alignment at scaffold_423:53984..61367+ (Clytia hemisphaerica)
CTTTTCTTCTCATGTCGGATACAGACCGTAAGGTAGTCCTTCTTGGTAGA
AAATTGATactttctttaaaatgttttcattgaTAACTGAACGTTTGTTT
TGTTGTTCACTAAAGCTATTTCTAGATACTCTTGAAATGGATTTAATCAA
GATTAATTAAGAtaaagttgttttttgaaaCGCCTGTCCAAGAAATTCAG
AATTCAACTCCTGTGTTGAGATCATTGGAAAAAGTAATCTAATAATTGAT
TCAGTAGGCGTTTCCAAGAATTGGAAAGTTTGTTCAGTTTATCCAACTTT
GACGATGTggagaaaaaagttaaaaaaacctCATCTTTATGTTCCTAGTG
TTCATCTGTTTCAGTTCTCGTCTTCGGctctaaaatgttgtttttacaTC
ACACTGGCAAGAAAACTTGGCCTCGATGTCAATGCTGTTAGGGTAAGAAT
AAGATATTCATAGAATATTCTAAACTGGCGCTCAAATGAAGTGACTATTC
GACCCCATCTAGGTGACATTCATGATTCTAGAAAAGAAACATTCTCCACa
accacagcccttcgcatgtctcacaaagtttcaacaacaaaaaaacataa
cataatttacatttttttctttagattgaTGATACCAGTGCtcgaaaaag
tcaattttttacaTCAATAAAACCAAGCATCGGGTATCTAATTCTTGTTG
ACTTTATTATACCTACTGAGTGCGCCAAGAGAAAGTATAAATGTTTGTCA
AGATATTGCGAGCTTAcggttaaaaattttttattgattcttttttggac
ctacctcggaggtcctttaaattaactgcatgccggaaatatgctggaaa
aaccagttttttggcactttctcgagatttcatcattagttttttctgat
gttttgcaAAGAAAGATGCGTATCAgtaatgcccaaaacatggccgaggc
tgatttttgagaaaaatttgctGAAAATCCCTGTTTTTGCAGGACTTTTT
CTTaatatgtctttgtttttttcacacaaaaacattattgataacaatgc
tcaacATCAAGCAATTGTCaacaaaactgatttttgaagccgaaaCTTTC
TAAATTCACCGGAACAGTTGAGAATTGCCGGAAAAACggtttctcttgaa
ttttttgagctgtactttatattttttcatgaaattttggacACTGATGC
AAAAATGGCAATACCtgaaatgtgacagagcccgattttcaataaacata
cATATNATTCACCGGAACAGTTGAgaatcgccggaaaaacggtttctctt
gaattttttgagctgtactttatattttttcatgaaattttggacACTGA
TGCAAAAATGGCAATACCtgaaatgtgacagagcccgattttcaataaac
atacatatttcttttttccctactccccttccctctcccccaacaacaat
caatgatgaaatttaatgcattttcgctaaacgcggattgtttttatttt
tctccttgttctgctatctaactttcatcgtcaggtaggtccattcagca
tctagcttgtttattCTATGAATGAAAGctcaacttaaattttggtttaC
AAAACTTTAATCACTCAGTCAAAagttatgtttaaaaaattggaaatttt
gaaaattttaactacccaaaaaattcattaaaaatttgGTGGTTAATTGG
ATGAAAGGTTATAATGGTATTTTANatcaaaagttatgtttaaaaaactg
gaaattttgaaaattttaactacccaaaaaattcattaaaaatttgGTGG
TTAATTGGATGAAAGGTTATAATGGTATTTTAAGATGAACGAAAAAGTCA
CGTTCAGAAGTTGGTAAAAACGTCAAATATTGACCTTTCAAAATGAAATG
GATGCGTATTTCAAGACTATAAGAGTTGgggaaaattttcttcaaagaga
aatttttttttgtggcgcacctattaaattattattttttcaccaTTCTA
GAGACACaatttacattgaatttcgTTCTGGTATGTTAAAGATGGTTGAT
GAACAAAGTAATCTCCTTGCTAGACTTAAAGCAACTGAAAATGCTACCAA
AAAAGATGTAAGGTCCTACTAATAAATGTTTTtagattaaaaatttgaaa
tatgctAACCACCTTTTTAGTATGTCAGTCAGTCACCTCAAAACTTTGGG
ACAGGCTGGTAacctcaaaaatggtcggattcggctgaaatttgggtgaa
tatctgggggtatttttttttctccaagattttgatttttaggggcTTGG
TCACAAGTTTCAtcctcaaaacgaggctaaaaactttTGGGCAGGctaga
gacttcaaaaattggtcttgcacacttgttcattgggtgaatatctgggg
gtgttttttttcttctttttttcggaattttgatttttaggggtgTGGTC
ACGAGCTTTAGCCTCAAAACGATgctaaaaactttggggcacgctggaga
cttcaaaaatgattttggtGAAATTTAGCTTactgttccttgggtgaata
cctgaggttgattttttccttttttcgaaattttcattttcaggggcgtg
gtcacgactttttcaccaaaacgaggctaaaacttttcttttatcaaaaa
tcttattttttaattttttttcttatgtttacAATGGGCCTACGAGTaat
gcggttagcacgttcgaccaTGGATATAAGAACATAAACTAGAAAACAAA
ACTTATTTTACACCTGCTCAATTCTTTAATTTACTTGCAGCATATACAAA
TATAGTACGTGAGACGTGAGACGTAATAAAATTATAGAGTGTACAATTCA
ATCCCTTGTTCTGATAAAGTTTGAAAGGCGACTTTCCTATGTCTGTTTGT
CTGAGTAAAGTTTTGACATATGCTCACTCAAATAATCGCAATATTATTGC
TTGGGTAGTTTGGTTGAAAAATAGTTGTTCGTAGTGAGACTGATACGGTG
AAAATTAAAGGTAAttagttttgaaatgttttttgtgTTTCTTGTTTTGT
CAGATCTTCGTATGTTTACTGCACGATGTGATTGAGTTTTATAAACACGG
AGGACAAATTAGTGGCAGGTATGTGTACGATTTACAAACTTTATTACTTA
CAACtattcttcaaaaataatttcatgaaaattggCTTCTTACAccgttc
ttacgttgaaatgaATCCTCTATCTTTGAGGAAGCCGTACACGTttcctt
ttataagaacaaattatataagaacataaggcttcgatggccaaaatgtt
aagaacatttttaaggctttgtggactcaaaacaccctttttcttaggaa
aatggtcaaaacgaatactcacaaaatggtggaaataagaacatgttaag
aacatttttaggcttgaaactcaaaaaaagttaagaacattcgaaggctt
caaaatttttggatgttttttaaaattttaggcAAATCCAGAAGATACAA
TGTAACCCATTTGATGAttgttttttaacattttaggcAAATCCAGAAGA
TTCAATGGCTCATTGAAACACTTTTACAACTTTCACCTACAGAAGATGAA
TCTAGGTTGTTTTTGACACGGATTTATTTACACCAAAACTCCAACATAGA
TGAGGTTAAAAAACATTTCTAGAACTTGTCATGCacttaaaaatgttttc
ttataTATCTTCATTCTGTTTACAAAGTAGCAGGAAAGTCTGGTTTCAcg
ccaaaatgaaaaaagagtaaagatgaatcttccaattttttgagaaatag
tATAAAGAACCCTGTTTTAGCAAAAATAGTCTTTTTGTTTTAGTTTgcta
tttttaacttttaattcCTTTTCCAGACATTGGAACATTTGACTTATTTA
ATATCTCATGGGAATTTGCCAAGTGAACCAATACATCAATTGTTAACTGT
CACCAAACGTCTCGAGGAAGAGAAAAAGAACGAAGAAAAAACTCAACCAG
TTTGTATCAGACAAAGTTTTTACCATATCATAATTCTCATTTTAAGCCGT
AGTCTAATGATCACCAATCACCTTTATGCGAATTTTTGCATTCTTTATTG
ATTTAATATTATCATTTATATTTAAGATTTCAGTTAAAATAACCAATTTT
GAATTCGAATTTGGACGACTCATTTTGATATGAATGTTTCTGTCATAGTC
CTTTGAAAGTTTTAAGGAACCTTTTTCAGATTGTTACTACCGTATATACT
ATTTTTCATACTCCTTACATTTCTCTTTCAGAAACTGAGATCGTCTACAG
AAGACAACCAAAAGGTGGTGTACAAGATCGGAATGATCATGAGACATCGA
AGGTAACTGCAAGTTTTTATATTTAGCCCCACGTGGTTAGGTCTGGAAAA
CTTTCTATTCGTAACTGCAATCAAAGAGGCTTTAATTTTGCGcaattaaa
aaagctttaattttGCGCAATTAAAGAagctttaattttgattttcaacc
ccTCGGCGATTCATGATATATGCACTATAGCAATGTCTTCTGagattaca
tcacggacccaaaagctgattggttgcaagtgatgAACTGAgagatttta
cgtcacttacaaccaaccAGCTGTCGGGTCTATGGTGTGATATCGAAGAC
ATTTCATTAATGCGTATCATGAAGAGGACCAGGTGCCCGGATTGAAAGTT
GGAAGCCAACACCCCCCATTACTTGAGGGTAATTTAATCTTATCGCTACA
TGCTGCNTGGAAGCCAACACCCCAATTACTTGAGGGTAATTTAATCTTAT
CGCTACATGCTGCCGCTGTTGATAGTAAAGAACGAACATTTTTTAGTTCC
TCTCCCCTCCATGTTGCCTCTTTAATGCCTATTTTCCACATATCTTCCAC
ATAGCATttcttaaaatgaattttactATAAGGACTGGTAAAAACCTAAA
CATTGACCTTgcaaatattttatatatttactGGTTTTACTTTCTCAATA
TTTTTGCAGGCTTGGGTACATGTGTGTTATATACGGTTGGGACAATTTTT
GTGATATGCCGTATAATTGGCAACGTCAGATGGGCGTTTTAGATATGTTG
AATGGTCCTAATCAACCTTTCTACAACGTCATGGTCAATGATGGTTCCAA
CAGATATGCAGCTCAAGGTATCCTTCCGTACTACTGTAACTTCAACAGCT
TTAAtacctttttatatttttatagaatattttcaaaaacatcatttatg
tacGTTCAATGGTCATTCTTCATATAATTTTTAACGTCAAAACAATGATC
TCAACTGAACGTTTGTAAACCTGATGAAGACCTCCACTGAggaggtcgaa
atattgtttaaaatgaaaatttatatgAAGAATGACCATTTGGGCGTACA
TAAATGATTCAATAATATTCTCATCTGAAGTATGACaattcaagaatttt
caaaaacaacatCGGATTTTACCCCATGTTTGTTGGAATTGGCTTTCGTA
TTCGACCACGTGTTCTATTTTTGACGTTGCCTGATCTCATTTATCAATAT
TATAAAGAAAAGTAATTCTTACGTAACGcagtcactgacctttatatatc
cctggaccaagctatatccaccatctttgatcgaagttttctttgaattg
gtacccacaaagaagccattgtagtgttgaAATTAACGTCTACCGGCGct
tcatcatcaaaagtattccagGGAACGTAGATCTAGCGCtatcgatgcat
ttacaccactattgagtagtgtcgccattagggtaccacttatcaaaaaa
ctccgatcaaagttTTTGCCTGGCCATTATTGaataacttggtccaggga
tatataaaggtcagtgaacGCAGTGCGTCCGGGAGAAAATCAGTGATCGA
GTTGAATTCATGTATAGGGAAATATCAATTCAATTTATATCGCCTATTTA
TTAtacttgattttgttttttcaaaaacgtGTTTTATTACTTTGGTAATT
GCTTATCCATTgataaaaatttctctctcattACAATCAAAGTATTTAAG
ATCTCCTCTGCTTTTTTCCGGACAGACTGTAGAAAGGAGTGATTTGGCAA
CAGCTCTTTTTATTCATGTTAttcgtgacgtaatgttttctccGGAAATA
ctccggttttagccagtagtgacAACTTTAAACAAGACAAAacttgtata
aaatttgccactactggcaaaaaccgggttcttttcgtagaaaacattac
gtcatgaatatcatgaataacattttttaaacaaatagAAAGTTTGATGA
TGCACGCAAATCCTGGTGAAATCGCTCACGAAGAGATTGGCAAATACTTC
TGCTCAATCATCAATAGCTGTTACTATAAACCCACTGAAATGTTGAATGA
AATGTACCCTGAGGATTGCGATTGGTTTGGATGCCCAGATGTTTGATTAA
TGGATTAGCATGATGCTTCCTGACTTTATGTAGTGCAGTATCTTATGATT
GATGAGATATCTCATTTGAGGACAAAAGTAATCATCTTAAATGATTGTAT
ATTCCACTCCCTGTTGAGGAGCTCCAACCTTTTTGTGAACTACCCCTTGG
AATTCCAAGCAATTTTAGAATTATACTCCTCTGGATTTccgaacttttcc
aaatttttaatcattacccccatggaattgcgcttatttttgacggattt
ttgtttactgctatggaattccactgtaTTTCAAACCATAACCCCTTGGA
ATGGAAATGAACCTCCTcgacagggggtgcacggtttttttctggaaaaa
cccgATGAAAAGAATTAAACCACAAGGCTACGGATGACGTAACGTAACTT
TTTGGTTGAGTATTATGTTTAACGGGATACTTTTCTTGAAAACAAGTAAA
AGTAACTCGCATATGGCATAAATAGTGAGTTTATGCATGTGTGTtattca
gcgacggagacggttagaTTCTGATTTGTCTAGACCCTGATCAACCGAGA
ACGACGGTAAACAAGCATATTTACTGGTCCACGAATTAGAACTGCGtatt
attccaaatcgcttcagtcacaacgccgtcctcaaaagtacaAAACATGA
AATTGGTAGTGTTTGATGgcaaggtctgtaaattatgtTTTCAATGTTAA
AATACTAAGATATGGTTTATAATAATGAATACGAGATTCGTTTCGCCCGA
GGACGAAATCATCAAGTAAAAGTGAATGTATTACACAAAATGaatataaa
aaatgattgaTTACAATTAGTTTGGTTTAAACAGATTCAATCATTGAGCC
TTCCCTTCGTATTAAAAAGAAACAAGCCAATAAAAACCTTTCGTTTATTA
AGAACCGTTTGATATGGTAAATATTTGGTATAGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040595	XLOC_040595	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_423	supercontig	scaffold_423:53984..61367 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.718865	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.800645	0	0	0

Blast

[Close]

BLAST of TCONS_00064718 vs. Swiss-Prot (Human)
Match: FBX21 (F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 2.567e-29
Identity = 61/122 (50.00%), Postives = 80/122 (65.57%), Query Frame = 3

Query:  633 KLRSSTEDNQKVVYKIGMIMRHRRLGYMCVIYGWDNFCDMPYNWQRQMGVLDMLNGPNQPFYNVMVNDGSNRYAAQESLMMHANPGEIAHEEIGKYFCSIINSCYYKPTEMLNEMYPEDCDW 998
            KLRS  E ++ V Y IG+IM+H+R GY CVIYGWD  C M + W R M V  + +G +QPFYNV+V DGS RYAAQE+L  +  P EI+H ++G+YF S     +Y P   L   YPED ++
Sbjct:  491 KLRSD-EKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYF-SEFTGTHYIPNAELEIRYPEDLEF 610

The following BLAST results are available for this feature:

BLAST of TCONS_00064718 vs. Swiss-Prot (Human)

BLAST of TCONS_00064718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FBX21	2.567e-29	50.00	F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE...	[more]

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TCONS_00064718 (transcript) - C. hemisphaerica