TCONS_00064717 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064717
Unique Name	TCONS_00064717
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1907

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_423:53983..61367+

transcript sequence

>TCONS_00064717 ID=TCONS_00064717|Name=TCONS_00064717|organism=Clytia hemisphaerica|type=transcript|length=1907bp
GCTTTTCTTCTCATGTCGGATACAGACCGTAAGTTCTCGTCTTCGGctct
aaaatgttgtttttacaTCACACTGGCAAGAAAACTTGGCCTCGATGTCA
ATGCTGTTAGGattgaTGATACCAGTGCtcgaaaaagtcaattttttaca
TCAATAAAACCAAGCATCGGAGACACaatttacattgaatttcgTTCTGG
TATGTTAAAGATGGTTGATGAACAAAGTAATCTCCTTGCTAGACTTAAAG
CAACTGAAAATGCTACCAAAAAAGATATCTTCGTATGTTTACTGCACGAT
GTGATTGAGTTTTATAAACACGGAGGACAAATTAGTGGCAGgcAAATCCA
GAAGATTCAATGGCTCATTGAAACACTTTTACAACTTTCACCTACAGAAG
ATGAATCTAGGTTGTTTTTGACACGGATTTATTTACACCAAAACTCCAAC
ATAGATGAGACATTGGAACATTTGACTTATTTAATATCTCATGGGAATTT
GCCAAGTGAACCAATACATCAATTGTTAACTGTCACCAAACGTCTCGAGG
AAGAGAAAAAGAACGAAGAAAAAACTCAACCAAAACTGAGATCGTCTACA
GAAGACAACCAAAAGGTGGTGTACAAGATCGGAATGATCATGAGACATCG
AAGGCTTGGGTACATGTGTGTTATATACGGTTGGGACAATTTTTGTGATA
TGCCGTATAATTGGCAACGTCAGATGGGCGTTTTAGATATGTTGAATGGT
CCTAATCAACCTTTCTACAACGTCATGGTCAATGATGGTTCCAACAGATA
TGCAGCTCAAGAAAGTTTGATGATGCACGCAAATCCTGGTGAAATCGCTC
ACGAAGAGATTGGCAAATACTTCTGCTCAATCATCAATAGCTGTTACTAT
AAACCCACTGAAATGTTGAATGAAATGTACCCTGAGGATTGCGATTGGTT
TGGATGCCCAGATGTTTGATTAATGGATTAGCATGATGCTTCCTGACTTT
ATGTAGTGCAGTATCTTATGATTGATGAGATATCTCATTTGAGGACAAAA
GTAATCATCTTAAATGATTGTATATTCCACTCCCTGTTGAGGAGCTCCAA
CCTTTTTGTGAACTACCCCTTGGAATTCCAAGCAATTTTAGAATTATACT
CCTCTGGATTTccgaacttttccaaatttttaatcattacccccatggaa
ttgcgcttatttttgacggatttttgtttactgctatggaattccactgt
aTTTCAAACCATAACCCCTTGGAATGGAAATGAACCTCCTcgacaggggg
tgcacggtttttttctggaaaaacccgATGAAAAGAATTAAACCACAAGG
CTACGGATGACGTAACGTAACTTTTTGGTTGAGTATTATGTTTAACGGGA
TACTTTTCTTGAAAACAAGTAAAAGTAACTCGCATATGGCATAAATAGTG
AGTTTATGCATGTGTGTtattcagcgacggagacggttagaTTCTGATTT
GTCTAGACCCTGATCAACCGAGAACGACGGTAAACAAGCATATTTACTGG
TCCACGAATTAGAACTGCGtattattccaaatcgcttcagtcacaacgcc
gtcctcaaaagtacaAAACATGAAATTGGTAGTGTTTGATGgcaaggtct
gtaaattatgtTTTCAATGTTAAAATACTAAGATATGGTTTATAATAATG
AATACGAGATTCGTTTCGCCCGAGGACGAAATCATCAAGTAAAAGTGAAT
GTATTACACAAAATGaatataaaaaatgattgaTTACAATTAGTTTGGTT
TAAACAGATTCAATCATTGAGCCTTCCCTTCGTATTAAAAAGAAACAAGC
CAATAAAAACCTTTCGTTTATTAAGAACCGTTTGATATGGTAAATATTTG
GTATAGA

Run BLAST on NCBI

transcript from alignment at scaffold_423:53983..61367+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064717 ID=TCONS_00064717|Name=TCONS_00064717|organism=Clytia hemisphaerica|type=transcript|length=7385bp|location=Sequence derived from alignment at scaffold_423:53983..61367+ (Clytia hemisphaerica)
GCTTTTCTTCTCATGTCGGATACAGACCGTAAGGTAGTCCTTCTTGGTAG
AAAATTGATactttctttaaaatgttttcattgaTAACTGAACGTTTGTT
TTGTTGTTCACTAAAGCTATTTCTAGATACTCTTGAAATGGATTTAATCA
AGATTAATTAAGAtaaagttgttttttgaaaCGCCTGTCCAAGAAATTCA
GAATTCAACTCCTGTGTTGAGATCATTGGAAAAAGTAATCTAATAATTGA
TTCAGTAGGCGTTTCCAAGAATTGGAAAGTTTGTTCAGTTTATCCAACTT
TGACGATGTggagaaaaaagttaaaaaaacctCATCTTTATGTTCCTAGT
GTTCATCTGTTTCAGTTCTCGTCTTCGGctctaaaatgttgtttttacaT
CACACTGGCAAGAAAACTTGGCCTCGATGTCAATGCTGTTAGGGTAAGAA
TAAGATATTCATAGAATATTCTAAACTGGCGCTCAAATGAAGTGACTATT
CGACCCCATCTAGGTGACATTCATGATTCTAGAAAAGAAACATTCTCCAC
aaccacagcccttcgcatgtctcacaaagtttcaacaacaaaaaaacata
acataatttacatttttttctttagattgaTGATACCAGTGCtcgaaaaa
gtcaattttttacaTCAATAAAACCAAGCATCGGGTATCTAATTCTTGTT
GACTTTATTATACCTACTGAGTGCGCCAAGAGAAAGTATAAATGTTTGTC
AAGATATTGCGAGCTTAcggttaaaaattttttattgattcttttttgga
cctacctcggaggtcctttaaattaactgcatgccggaaatatgctggaa
aaaccagttttttggcactttctcgagatttcatcattagttttttctga
tgttttgcaAAGAAAGATGCGTATCAgtaatgcccaaaacatggccgagg
ctgatttttgagaaaaatttgctGAAAATCCCTGTTTTTGCAGGACTTTT
TCTTaatatgtctttgtttttttcacacaaaaacattattgataacaatg
ctcaacATCAAGCAATTGTCaacaaaactgatttttgaagccgaaaCTTT
CTAAATTCACCGGAACAGTTGAGAATTGCCGGAAAAACggtttctcttga
attttttgagctgtactttatattttttcatgaaattttggacACTGATG
CAAAAATGGCAATACCtgaaatgtgacagagcccgattttcaataaacat
acATATNATTCACCGGAACAGTTGAgaatcgccggaaaaacggtttctct
tgaattttttgagctgtactttatattttttcatgaaattttggacACTG
ATGCAAAAATGGCAATACCtgaaatgtgacagagcccgattttcaataaa
catacatatttcttttttccctactccccttccctctcccccaacaacaa
tcaatgatgaaatttaatgcattttcgctaaacgcggattgtttttattt
ttctccttgttctgctatctaactttcatcgtcaggtaggtccattcagc
atctagcttgtttattCTATGAATGAAAGctcaacttaaattttggttta
CAAAACTTTAATCACTCAGTCAAAagttatgtttaaaaaattggaaattt
tgaaaattttaactacccaaaaaattcattaaaaatttgGTGGTTAATTG
GATGAAAGGTTATAATGGTATTTTANatcaaaagttatgtttaaaaaact
ggaaattttgaaaattttaactacccaaaaaattcattaaaaatttgGTG
GTTAATTGGATGAAAGGTTATAATGGTATTTTAAGATGAACGAAAAAGTC
ACGTTCAGAAGTTGGTAAAAACGTCAAATATTGACCTTTCAAAATGAAAT
GGATGCGTATTTCAAGACTATAAGAGTTGgggaaaattttcttcaaagag
aaatttttttttgtggcgcacctattaaattattattttttcaccaTTCT
AGAGACACaatttacattgaatttcgTTCTGGTATGTTAAAGATGGTTGA
TGAACAAAGTAATCTCCTTGCTAGACTTAAAGCAACTGAAAATGCTACCA
AAAAAGATGTAAGGTCCTACTAATAAATGTTTTtagattaaaaatttgaa
atatgctAACCACCTTTTTAGTATGTCAGTCAGTCACCTCAAAACTTTGG
GACAGGCTGGTAacctcaaaaatggtcggattcggctgaaatttgggtga
atatctgggggtatttttttttctccaagattttgatttttaggggcTTG
GTCACAAGTTTCAtcctcaaaacgaggctaaaaactttTGGGCAGGctag
agacttcaaaaattggtcttgcacacttgttcattgggtgaatatctggg
ggtgttttttttcttctttttttcggaattttgatttttaggggtgTGGT
CACGAGCTTTAGCCTCAAAACGATgctaaaaactttggggcacgctggag
acttcaaaaatgattttggtGAAATTTAGCTTactgttccttgggtgaat
acctgaggttgattttttccttttttcgaaattttcattttcaggggcgt
ggtcacgactttttcaccaaaacgaggctaaaacttttcttttatcaaaa
atcttattttttaattttttttcttatgtttacAATGGGCCTACGAGTaa
tgcggttagcacgttcgaccaTGGATATAAGAACATAAACTAGAAAACAA
AACTTATTTTACACCTGCTCAATTCTTTAATTTACTTGCAGCATATACAA
ATATAGTACGTGAGACGTGAGACGTAATAAAATTATAGAGTGTACAATTC
AATCCCTTGTTCTGATAAAGTTTGAAAGGCGACTTTCCTATGTCTGTTTG
TCTGAGTAAAGTTTTGACATATGCTCACTCAAATAATCGCAATATTATTG
CTTGGGTAGTTTGGTTGAAAAATAGTTGTTCGTAGTGAGACTGATACGGT
GAAAATTAAAGGTAAttagttttgaaatgttttttgtgTTTCTTGTTTTG
TCAGATCTTCGTATGTTTACTGCACGATGTGATTGAGTTTTATAAACACG
GAGGACAAATTAGTGGCAGGTATGTGTACGATTTACAAACTTTATTACTT
ACAACtattcttcaaaaataatttcatgaaaattggCTTCTTACAccgtt
cttacgttgaaatgaATCCTCTATCTTTGAGGAAGCCGTACACGTttcct
tttataagaacaaattatataagaacataaggcttcgatggccaaaatgt
taagaacatttttaaggctttgtggactcaaaacaccctttttcttagga
aaatggtcaaaacgaatactcacaaaatggtggaaataagaacatgttaa
gaacatttttaggcttgaaactcaaaaaaagttaagaacattcgaaggct
tcaaaatttttggatgttttttaaaattttaggcAAATCCAGAAGATACA
ATGTAACCCATTTGATGAttgttttttaacattttaggcAAATCCAGAAG
ATTCAATGGCTCATTGAAACACTTTTACAACTTTCACCTACAGAAGATGA
ATCTAGGTTGTTTTTGACACGGATTTATTTACACCAAAACTCCAACATAG
ATGAGGTTAAAAAACATTTCTAGAACTTGTCATGCacttaaaaatgtttt
cttataTATCTTCATTCTGTTTACAAAGTAGCAGGAAAGTCTGGTTTCAc
gccaaaatgaaaaaagagtaaagatgaatcttccaattttttgagaaata
gtATAAAGAACCCTGTTTTAGCAAAAATAGTCTTTTTGTTTTAGTTTgct
atttttaacttttaattcCTTTTCCAGACATTGGAACATTTGACTTATTT
AATATCTCATGGGAATTTGCCAAGTGAACCAATACATCAATTGTTAACTG
TCACCAAACGTCTCGAGGAAGAGAAAAAGAACGAAGAAAAAACTCAACCA
GTTTGTATCAGACAAAGTTTTTACCATATCATAATTCTCATTTTAAGCCG
TAGTCTAATGATCACCAATCACCTTTATGCGAATTTTTGCATTCTTTATT
GATTTAATATTATCATTTATATTTAAGATTTCAGTTAAAATAACCAATTT
TGAATTCGAATTTGGACGACTCATTTTGATATGAATGTTTCTGTCATAGT
CCTTTGAAAGTTTTAAGGAACCTTTTTCAGATTGTTACTACCGTATATAC
TATTTTTCATACTCCTTACATTTCTCTTTCAGAAACTGAGATCGTCTACA
GAAGACAACCAAAAGGTGGTGTACAAGATCGGAATGATCATGAGACATCG
AAGGTAACTGCAAGTTTTTATATTTAGCCCCACGTGGTTAGGTCTGGAAA
ACTTTCTATTCGTAACTGCAATCAAAGAGGCTTTAATTTTGCGcaattaa
aaaagctttaattttGCGCAATTAAAGAagctttaattttgattttcaac
cccTCGGCGATTCATGATATATGCACTATAGCAATGTCTTCTGagattac
atcacggacccaaaagctgattggttgcaagtgatgAACTGAgagatttt
acgtcacttacaaccaaccAGCTGTCGGGTCTATGGTGTGATATCGAAGA
CATTTCATTAATGCGTATCATGAAGAGGACCAGGTGCCCGGATTGAAAGT
TGGAAGCCAACACCCCCCATTACTTGAGGGTAATTTAATCTTATCGCTAC
ATGCTGCNTGGAAGCCAACACCCCAATTACTTGAGGGTAATTTAATCTTA
TCGCTACATGCTGCCGCTGTTGATAGTAAAGAACGAACATTTTTTAGTTC
CTCTCCCCTCCATGTTGCCTCTTTAATGCCTATTTTCCACATATCTTCCA
CATAGCATttcttaaaatgaattttactATAAGGACTGGTAAAAACCTAA
ACATTGACCTTgcaaatattttatatatttactGGTTTTACTTTCTCAAT
ATTTTTGCAGGCTTGGGTACATGTGTGTTATATACGGTTGGGACAATTTT
TGTGATATGCCGTATAATTGGCAACGTCAGATGGGCGTTTTAGATATGTT
GAATGGTCCTAATCAACCTTTCTACAACGTCATGGTCAATGATGGTTCCA
ACAGATATGCAGCTCAAGGTATCCTTCCGTACTACTGTAACTTCAACAGC
TTTAAtacctttttatatttttatagaatattttcaaaaacatcatttat
gtacGTTCAATGGTCATTCTTCATATAATTTTTAACGTCAAAACAATGAT
CTCAACTGAACGTTTGTAAACCTGATGAAGACCTCCACTGAggaggtcga
aatattgtttaaaatgaaaatttatatgAAGAATGACCATTTGGGCGTAC
ATAAATGATTCAATAATATTCTCATCTGAAGTATGACaattcaagaattt
tcaaaaacaacatCGGATTTTACCCCATGTTTGTTGGAATTGGCTTTCGT
ATTCGACCACGTGTTCTATTTTTGACGTTGCCTGATCTCATTTATCAATA
TTATAAAGAAAAGTAATTCTTACGTAACGcagtcactgacctttatatat
ccctggaccaagctatatccaccatctttgatcgaagttttctttgaatt
ggtacccacaaagaagccattgtagtgttgaAATTAACGTCTACCGGCGc
ttcatcatcaaaagtattccagGGAACGTAGATCTAGCGCtatcgatgca
tttacaccactattgagtagtgtcgccattagggtaccacttatcaaaaa
actccgatcaaagttTTTGCCTGGCCATTATTGaataacttggtccaggg
atatataaaggtcagtgaacGCAGTGCGTCCGGGAGAAAATCAGTGATCG
AGTTGAATTCATGTATAGGGAAATATCAATTCAATTTATATCGCCTATTT
ATTAtacttgattttgttttttcaaaaacgtGTTTTATTACTTTGGTAAT
TGCTTATCCATTgataaaaatttctctctcattACAATCAAAGTATTTAA
GATCTCCTCTGCTTTTTTCCGGACAGACTGTAGAAAGGAGTGATTTGGCA
ACAGCTCTTTTTATTCATGTTAttcgtgacgtaatgttttctccGGAAAT
ActccggttttagccagtagtgacAACTTTAAACAAGACAAAacttgtat
aaaatttgccactactggcaaaaaccgggttcttttcgtagaaaacatta
cgtcatgaatatcatgaataacattttttaaacaaatagAAAGTTTGATG
ATGCACGCAAATCCTGGTGAAATCGCTCACGAAGAGATTGGCAAATACTT
CTGCTCAATCATCAATAGCTGTTACTATAAACCCACTGAAATGTTGAATG
AAATGTACCCTGAGGATTGCGATTGGTTTGGATGCCCAGATGTTTGATTA
ATGGATTAGCATGATGCTTCCTGACTTTATGTAGTGCAGTATCTTATGAT
TGATGAGATATCTCATTTGAGGACAAAAGTAATCATCTTAAATGATTGTA
TATTCCACTCCCTGTTGAGGAGCTCCAACCTTTTTGTGAACTACCCCTTG
GAATTCCAAGCAATTTTAGAATTATACTCCTCTGGATTTccgaacttttc
caaatttttaatcattacccccatggaattgcgcttatttttgacggatt
tttgtttactgctatggaattccactgtaTTTCAAACCATAACCCCTTGG
AATGGAAATGAACCTCCTcgacagggggtgcacggtttttttctggaaaa
acccgATGAAAAGAATTAAACCACAAGGCTACGGATGACGTAACGTAACT
TTTTGGTTGAGTATTATGTTTAACGGGATACTTTTCTTGAAAACAAGTAA
AAGTAACTCGCATATGGCATAAATAGTGAGTTTATGCATGTGTGTtattc
agcgacggagacggttagaTTCTGATTTGTCTAGACCCTGATCAACCGAG
AACGACGGTAAACAAGCATATTTACTGGTCCACGAATTAGAACTGCGtat
tattccaaatcgcttcagtcacaacgccgtcctcaaaagtacaAAACATG
AAATTGGTAGTGTTTGATGgcaaggtctgtaaattatgtTTTCAATGTTA
AAATACTAAGATATGGTTTATAATAATGAATACGAGATTCGTTTCGCCCG
AGGACGAAATCATCAAGTAAAAGTGAATGTATTACACAAAATGaatataa
aaaatgattgaTTACAATTAGTTTGGTTTAAACAGATTCAATCATTGAGC
CTTCCCTTCGTATTAAAAAGAAACAAGCCAATAAAAACCTTTCGTTTATT
AAGAACCGTTTGATATGGTAAATATTTGGTATAGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040595	XLOC_040595	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_423	supercontig	scaffold_423:53983..61367 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30356	6.7561e-06	1.4155	0	3.37933e-05	0	0.0674664	1.31199	0.0555552	0	0.424426	1.79203	0.899285	0	0.199662	0	0.000193633	0	1.1491	0	0.239756	0.000118679	0.991718	0	0.708876	4.85031e-05	2.66712e-05	0.786247	0	0

Blast

[Close]

BLAST of TCONS_00064717 vs. Swiss-Prot (Human)
Match: FBX21 (F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.540e-31
Identity = 102/315 (32.38%), Postives = 151/315 (47.94%), Query Frame = 1

Query:   61 FYITLARKLGLDVNAVRIDDTSA-RKSQFFTSIKPSIGDTIYIE-FRSGMLKMVDEQSNLL-----ARLKATENATKKDIFVCLLHDVIEFYKHGGQISGRQIQKIQWLIETLLQLSPTEDESRLFLTRIYLHQNS----------NIDETLEHLTYL--ISHGNLPSEPIHQLLTVTKRLXXXXXXXXXTQPKLRSSTEDNQKVVYKIGMIMRHRRLGYMCVIYGWDNFCDMPYNWQRQMGVLDMLNGPNQPFYNVMVNDGSNRYAAQESLMMHANPGEIAHEEIGKYFCSIINSCYYKPTEMLNEMYPEDCDW 948
             Y+T+AR+LG+ +  V        R  Q        I D IYI+ F  G    V E   L+     A L    N  K  +   ++ +++   K  G     Q+ +    ++  L + P + +  L   R+Y H              + + L+H+  L    HG +     H L  + ++     K E   + KLRS  E ++ V Y IG+IM+H+R GY CVIYGWD  C M + W R M V  + +G +QPFYNV+V DGS RYAAQE+L  +  P EI+H ++G+YF S     +Y P   L   YPED ++
Sbjct:  307 LYLTIARQLGVPLEPVNFPSHFLLRWCQGAEGATLDIFDYIYIDAFGKGKQLTVKECEYLIGQHVTAALYGVVNVKK--VLQRMVGNLLSLGKREGIDQSYQLLRDS--LDLYLAMYPDQVQLLLLQARLYFHLGIWPEKSFCLVLKVLDILQHIQTLDPGQHGAVGYLVQHTLEHIERK-----KEEVGVEVKLRSD-EKHRDVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVLVEDGSCRYAAQENLEYNVEPQEISHPDVGRYF-SEFTGTHYIPNAELEIRYPEDLEF 610

The following BLAST results are available for this feature:

BLAST of TCONS_00064717 vs. Swiss-Prot (Human)

BLAST of TCONS_00064717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FBX21	3.540e-31	32.38	F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE...	[more]

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TCONS_00064717 (transcript) - C. hemisphaerica