TCONS_00064713 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064713
Unique NameTCONS_00064713
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064713 ID=TCONS_00064713|Name=TCONS_00064713|organism=Clytia hemisphaerica|type=transcript|length=459bp
CGAACGAAACGATCGAATGATTTCTTTGGTAACACCATCACAACCAGGAT
GTTCATCAGGGCGTTGACCACGTTTGTTTTTCAGTTCATGATCCGCTCCT
TTGGCCAACAaccatctgatgacgtcatgtttGTTGAGCCATGCTGCATG
ATGCAACGGTGTTCTGTTATCTTCGTCTCTTCCATCGATCAACTTTTCGA
TTGTTTGTTGATCAAATTGTTCCAAATGACGAACTTTTCCATTATAACCA
ACCCAATGAAGAACGTTCCAACCATGTTTGTTCACGAGTGAAAAATCTTG
AGGATAATTCATCAAGTGAACGAAAACGTCGAAACGATCTCCAATAACAG
CCTCCATGAGAAGTGTCCGACCAACAACACCACGCAATGAGTTGACGATG
TTCGGTTTTTGGTGGaaaatttcttcgaatttcgcgaatttcttttcctc
caaaatttt
Run BLAST on NCBI

protein sequence of TCONS_00064713-protein

>TCONS_00064713-protein ID=TCONS_00064713-protein|Name=TCONS_00064713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
KILEEKKFAKFEEIFHQKPNIVNSLRGVVGRTLLMEAVIGDRFDVFVHLM
NYPQDFSLVNKHGWNVLHWVGYNGKVRHLEQFDQQTIEKLIDGRDEDNRT
PLHHAAWLNKHDVIRWLLAKGADHELKNKRGQRPDEHPGCDGVTKEIIRS
FRS
Run BLAST on NCBI

transcript from alignment at scaffold_422:14863..15321

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064713 ID=TCONS_00064713|Name=TCONS_00064713|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at scaffold_422:14863..15321 (Clytia hemisphaerica)
aaaattttggaggaaaagaaattcgcgaaattcgaagaaattttCCACCA
AAAACCGAACATCGTCAACTCATTGCGTGGTGTTGTTGGTCGGACACTTC
TCATGGAGGCTGTTATTGGAGATCGTTTCGACGTTTTCGTTCACTTGATG
AATTATCCTCAAGATTTTTCACTCGTGAACAAACATGGTTGGAACGTTCT
TCATTGGGTTGGTTATAATGGAAAAGTTCGTCATTTGGAACAATTTGATC
AACAAACAATCGAAAAGTTGATCGATGGAAGAGACGAAGATAACAGAACA
CCGTTGCATCATGCAGCATGGCTCAACaaacatgacgtcatcagatggtT
GTTGGCCAAAGGAGCGGATCATGAACTGAAAAACAAACGTGGTCAACGCC
CTGATGAACATCCTGGTTGTGATGGTGTTACCAAAGAAATCATTCGATCG
TTTCGTTCG

Coding sequence (CDS) from alignment at scaffold_422:14863..15321

>TCONS_00064713 ID=TCONS_00064713|Name=TCONS_00064713|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_422:14863..15321 (Clytia hemisphaerica)
aaaattttggaggaaaagaaattcgcgaaattcgaagaaattttCCACCA
AAAACCGAACATCGTCAACTCATTGCGTGGTGTTGTTGGTCGGACACTTC
TCATGGAGGCTGTTATTGGAGATCGTTTCGACGTTTTCGTTCACTTGATG
AATTATCCTCAAGATTTTTCACTCGTGAACAAACATGGTTGGAACGTTCT
TCATTGGGTTGGTTATAATGGAAAAGTTCGTCATTTGGAACAATTTGATC
AACAAACAATCGAAAAGTTGATCGATGGAAGAGACGAAGATAACAGAACA
CCGTTGCATCATGCAGCATGGCTCAACaaacatgacgtcatcagatggtT
GTTGGCCAAAGGAGCGGATCATGAACTGAAAAACAAACGTGGTCAACGCC
CTGATGAACATCCTGGTTGTGATGGTGTTACCAAAGAAATCATTCGATCG
TTTCGTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040594XLOC_040594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064713-exon-scaffold_422-1491911889:14863..15321TCONS_00064713-exon-scaffold_422-1491911889:14863..15321Clytia hemisphaericaexon
TCONS_00064713-exon-scaffold_422-1510915933:14863..15321TCONS_00064713-exon-scaffold_422-1510915933:14863..15321Clytia hemisphaericaexon
TCONS_00064713-exon-scaffold_422-1575043694:14863..15321TCONS_00064713-exon-scaffold_422-1575043694:14863..15321Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064713-proteinTCONS_00064713-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_422supercontigscaffold_422:14863..15321 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.649886	0.962717	0.183165	0	1.19994	1.41029	1.13395	1.07242	1.37904	2.55033	4.93001	0.72097	10.2045	6.37461	4.04409	5.15753	2.51132	5.44698	10.239	9.82276	2.30461	2.68092	2.67617	5.81135	12.1986	8.75487	15.7037	15.0046	12.0394	11.3485
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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