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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064710 ID=TCONS_00064710|Name=TCONS_00064710|organism=Clytia hemisphaerica|type=transcript|length=2004bp
AATATTCTCTTTTGTGTGAAGAGTGATATTGATAAACATACTTTTATGAC
TCTAAATCTTCAactttgtcaatattttcataatttttctttaGGTCTTT
CTTAGAAACAAAATAGgaagacaaaaacaaaacaaaaaagacaacaaaga
aACCAGAAGGAAAAATCACAATAAAGGAATCAGTCTCTTTTACGAAAAAA
GGAAACACCTTGTCACTTTGGAAGTTGTGGGGATTTTCCGTTCTTAAATC
GACGGTTAAAGATATCTATTCGCAATAAAAACACCATACGTATCCGATTG
CTTTCCCTATATGATCACTACCTCATCACTGAAGTAAAGggaaatctatt
ttaaaaccTAATACAGAAAAAAAGAAGGACATTCAAGGAAAAAGTGTAAT
AATTTGTTCGAAGCGAAGATTTCAGCTGAAAGAATTCCAGTTTGGCTATC
GTTATTAAGACGTCGGGCGCCAATAAGATAGTTTGACGTGACACATTTTT
GCTACAAAACAAGATATGGCTACGCAGGATTTTAACATAACTTTCATGAA
CTCAAGCACTCAACTTAACAACACTTATAAGCTACGTAACCAAACAGTAA
TTGGTAGAAGGGTGGTTATGGCGGGATGTGGAAACCTTGAATTTAATCCA
CCATATCACATCTCGGGCGTTGTTATTGCTTCTTTCATCGTTATGGTGAA
TATCTTGGTTTTAGCCTTgataagtaaaaataaaaaactgcgACGGACAC
CGGCTAACTTTTTACTGTTGAGTTTCTCACTGAATGATATTATAAGTGGA
TTTTCAATTATTGTTCATATGATACCATATTACTATCTCACGGTAAACGG
ATGTCTAAAATTCCGCTTAGTCTTCAACCAAAGTTACATGATCGCTTCAC
ATATGATTTCCTATCTTCTTCTACTAAACGCAGTCGGTCATCTCTTACTC
CTATCCAGTGAAAGATTCATATCTTTGTACTACGCGCTTAGATATCAATC
TCTCGTGACGCGTGGTCGCATCATAATGGCATGTTGTATTGTGTGGACAA
TTGCTTCACTTATGACTCTGGTTCAACTCTTCTGGATTATTCCTTACATG
ACCAGTAAGAATCCTGCATCATCTATCGAAATGTTCCGTCTCCACAGTTA
CAGATATACCTTAGTCATCATAATAGCGTTCTTCTTCATCCCGGCAATCG
TTCTTATCACGCAGTACTCATGGTTATTTTTCCTCATTCAGAGACTCATC
CAATCAGCACCTGGATCGCGGAAGACAAATCGCTCCTTAAAGGAACGCAA
AGCGCTTATCATCTACTGCGCTATGTTCCTATGTTTTCTAGTATGTACAT
TACCATACATGGTTCTACAACTACTTTACAACATCAAGCCACGATCGCTT
CTCAATTTCCCATCCGCTCTTCTTGAAGGTATATTCCTGCTCCGATTCAT
CGTATCAATTATAAACCCTCTACTATACACTCTCTATAAACGAGACTTCA
GGCAAGCAGCTACAGTTACGCTTCTAAATCCTCTTAGAAAACTCTTTCGG
AAAGACTTTGATTACTATAACCGGCAGCATATTTACTTAAGCACGCGTGA
TGCGAATTCAAGTTATATAGATAATACATCGACGTTCGATTCCTCAACTA
CTCAATACAATAACAATACCTTAATGGCATCACCTTGCACAAACACTGAT
AAACTAAGCCCAACTTCGTTTTCGAGTTGCGAGAAAAATAGTTTATTATG
TAAATGATGTAAGAAATAATATTTTGAGTAGTGGATGTCATTGCTACAGt
agactctctctaattcgaccttcAATAGATCAATAATTTTCTCGCGTAAT
AgaggaaaattcaaaatatgaGAAGTCTTTTGAACAAAATTCAAGCTCAA
TATTttggttcgaattacagaaagattctaATCTTAGAAGTTCGAGTTTG
AGGGAGTATTTTCAAGTTTTCTAAATAATTTCGGATAAAATATGGAGCCG
GAGG Run BLAST on NCBI protein sequence of TCONS_00064710-protein >TCONS_00064710-protein ID=TCONS_00064710-protein|Name=TCONS_00064710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=413bp
MATQDFNITFMNSSTQLNNTYKLRNQTVIGRRVVMAGCGNLEFNPPYHIS
GVVIASFIVMVNILVLALISKNKKLRRTPANFLLLSFSLNDIISGFSIIV
HMIPYYYLTVNGCLKFRLVFNQSYMIASHMISYLLLLNAVGHLLLLSSER
FISLYYALRYQSLVTRGRIIMACCIVWTIASLMTLVQLFWIIPYMTSKNP
ASSIEMFRLHSYRYTLVIIIAFFFIPAIVLITQYSWLFFLIQRLIQSAPG
SRKTNRSLKERKALIIYCAMFLCFLVCTLPYMVLQLLYNIKPRSLLNFPS
ALLEGIFLLRFIVSIINPLLYTLYKRDFRQAATVTLLNPLRKLFRKDFDY
YNRQHIYLSTRDANSSYIDNTSTFDSSTTQYNNNTLMASPCTNTDKLSPT
SFSSCEKNSLLCK Run BLAST on NCBI transcript from alignment at scaffold_421:120778..122781 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064710 ID=TCONS_00064710|Name=TCONS_00064710|organism=Clytia hemisphaerica|type=transcript|length=2004bp|location=Sequence derived from alignment at scaffold_421:120778..122781 (Clytia hemisphaerica)
CCTCCGGCTCCATATTTTATCCGAAATTATTTAGAAAACTTGAAAATACT
CCCTCAAACTCGAACTTCTAAGATtagaatctttctgtaattcgaaccaa
AATATTGAGCTTGAATTTTGTTCAAAAGACTTCtcatattttgaattttc
ctcTATTACGCGAGAAAATTATTGATCTATTgaaggtcgaattagagaga
gtctaCTGTAGCAATGACATCCACTACTCAAAATATTATTTCTTACATCA
TTTACATAATAAACTATTTTTCTCGCAACTCGAAAACGAAGTTGGGCTTA
GTTTATCAGTGTTTGTGCAAGGTGATGCCATTAAGGTATTGTTATTGTAT
TGAGTAGTTGAGGAATCGAACGTCGATGTATTATCTATATAACTTGAATT
CGCATCACGCGTGCTTAAGTAAATATGCTGCCGGTTATAGTAATCAAAGT
CTTTCCGAAAGAGTTTTCTAAGAGGATTTAGAAGCGTAACTGTAGCTGCT
TGCCTGAAGTCTCGTTTATAGAGAGTGTATAGTAGAGGGTTTATAATTGA
TACGATGAATCGGAGCAGGAATATACCTTCAAGAAGAGCGGATGGGAAAT
TGAGAAGCGATCGTGGCTTGATGTTGTAAAGTAGTTGTAGAACCATGTAT
GGTAATGTACATACTAGAAAACATAGGAACATAGCGCAGTAGATGATAAG
CGCTTTGCGTTCCTTTAAGGAGCGATTTGTCTTCCGCGATCCAGGTGCTG
ATTGGATGAGTCTCTGAATGAGGAAAAATAACCATGAGTACTGCGTGATA
AGAACGATTGCCGGGATGAAGAAGAACGCTATTATGATGACTAAGGTATA
TCTGTAACTGTGGAGACGGAACATTTCGATAGATGATGCAGGATTCTTAC
TGGTCATGTAAGGAATAATCCAGAAGAGTTGAACCAGAGTCATAAGTGAA
GCAATTGTCCACACAATACAACATGCCATTATGATGCGACCACGCGTCAC
GAGAGATTGATATCTAAGCGCGTAGTACAAAGATATGAATCTTTCACTGG
ATAGGAGTAAGAGATGACCGACTGCGTTTAGTAGAAGAAGATAGGAAATC
ATATGTGAAGCGATCATGTAACTTTGGTTGAAGACTAAGCGGAATTTTAG
ACATCCGTTTACCGTGAGATAGTAATATGGTATCATATGAACAATAATTG
AAAATCCACTTATAATATCATTCAGTGAGAAACTCAACAGTAAAAAGTTA
GCCGGTGTCCGTcgcagttttttatttttacttatcAAGGCTAAAACCAA
GATATTCACCATAACGATGAAAGAAGCAATAACAACGCCCGAGATGTGAT
ATGGTGGATTAAATTCAAGGTTTCCACATCCCGCCATAACCACCCTTCTA
CCAATTACTGTTTGGTTACGTAGCTTATAAGTGTTGTTAAGTTGAGTGCT
TGAGTTCATGAAAGTTATGTTAAAATCCTGCGTAGCCATATCTTGTTTTG
TAGCAAAAATGTGTCACGTCAAACTATCTTATTGGCGCCCGACGTCTTAA
TAACGATAGCCAAACTGGAATTCTTTCAGCTGAAATCTTCGCTTCGAACA
AATTATTACACTTTTTCCTTGAATGTCCTTCTTTTTTTCTGTATTAggtt
ttaaaatagatttccCTTTACTTCAGTGATGAGGTAGTGATCATATAGGG
AAAGCAATCGGATACGTATGGTGTTTTTATTGCGAATAGATATCTTTAAC
CGTCGATTTAAGAACGGAAAATCCCCACAACTTCCAAAGTGACAAGGTGT
TTCCTTTTTTCGTAAAAGAGACTGATTCCTTTATTGTGATTTTTCCTTCT
GGTttctttgttgtcttttttgttttgtttttgtcttcCTATTTTGTTTC
TAAGAAAGACCtaaagaaaaattatgaaaatattgacaaagtTGAAGATT
TAGAGTCATAAAAGTATGTTTATCAATATCACTCTTCACACAAAAGAGAA
TATT Coding sequence (CDS) from alignment at scaffold_421:120778..122781 >TCONS_00064710 ID=TCONS_00064710|Name=TCONS_00064710|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_421:120778..122781 (Clytia hemisphaerica)
TCATTTACATAATAAACTATTTTTCTCGCAACTCGAAAACGAAGTTGGGC
TTAGTTTATCAGTGTTTGTGCAAGGTGATGCCATTAAGGTATTGTTATTG
TATTGAGTAGTTGAGGAATCGAACGTCGATGTATTATCTATATAACTTGA
ATTCGCATCACGCGTGCTTAAGTAAATATGCTGCCGGTTATAGTAATCAA
AGTCTTTCCGAAAGAGTTTTCTAAGAGGATTTAGAAGCGTAACTGTAGCT
GCTTGCCTGAAGTCTCGTTTATAGAGAGTGTATAGTAGAGGGTTTATAAT
TGATACGATGAATCGGAGCAGGAATATACCTTCAAGAAGAGCGGATGGGA
AATTGAGAAGCGATCGTGGCTTGATGTTGTAAAGTAGTTGTAGAACCATG
TATGGTAATGTACATACTAGAAAACATAGGAACATAGCGCAGTAGATGAT
AAGCGCTTTGCGTTCCTTTAAGGAGCGATTTGTCTTCCGCGATCCAGGTG
CTGATTGGATGAGTCTCTGAATGAGGAAAAATAACCATGAGTACTGCGTG
ATAAGAACGATTGCCGGGATGAAGAAGAACGCTATTATGATGACTAAGGT
ATATCTGTAACTGTGGAGACGGAACATTTCGATAGATGATGCAGGATTCT
TACTGGTCATGTAAGGAATAATCCAGAAGAGTTGAACCAGAGTCATAAGT
GAAGCAATTGTCCACACAATACAACATGCCATTATGATGCGACCACGCGT
CACGAGAGATTGATATCTAAGCGCGTAGTACAAAGATATGAATCTTTCAC
TGGATAGGAGTAAGAGATGACCGACTGCGTTTAGTAGAAGAAGATAGGAA
ATCATATGTGAAGCGATCATGTAACTTTGGTTGAAGACTAAGCGGAATTT
TAGACATCCGTTTACCGTGAGATAGTAATATGGTATCATATGAACAATAA
TTGAAAATCCACTTATAATATCATTCAGTGAGAAACTCAACAGTAAAAAG
TTAGCCGGTGTCCGTcgcagttttttatttttacttatcAAGGCTAAAAC
CAAGATATTCACCATAACGATGAAAGAAGCAATAACAACGCCCGAGATGT
GATATGGTGGATTAAATTCAAGGTTTCCACATCCCGCCATAACCACCCTT
CTACCAATTACTGTTTGGTTACGTAGCTTATAAGTGTTGTTAAGTTGAGT
GCTTGAGTTCATGAAAGTTATGTTAAAATCCTGCGTAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064710-exon-scaffold_421-1491911889:120778..122781 | TCONS_00064710-exon-scaffold_421-1491911889:120778..122781 | Clytia hemisphaerica | exon |
| TCONS_00064710-exon-scaffold_421-1510915933:120778..122781 | TCONS_00064710-exon-scaffold_421-1510915933:120778..122781 | Clytia hemisphaerica | exon |
| TCONS_00064710-exon-scaffold_421-1575043694:120778..122781 | TCONS_00064710-exon-scaffold_421-1575043694:120778..122781 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_421 | supercontig | scaffold_421:120778..122781 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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