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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064691 ID=TCONS_00064691|Name=TCONS_00064691|organism=Clytia hemisphaerica|type=transcript|length=2253bpRun BLAST on NCBI protein sequence of TCONS_00064691-protein >TCONS_00064691-protein ID=TCONS_00064691-protein|Name=TCONS_00064691-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp MTFWDNPQMIINHIRHSCVTSDDTGMCEMVIVQDEPEIFQFKQRKRIGGMRun BLAST on NCBI transcript from alignment at scaffold_421:2897..41455+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064691 ID=TCONS_00064691|Name=TCONS_00064691|organism=Clytia hemisphaerica|type=transcript|length=38559bp|location=Sequence derived from alignment at scaffold_421:2897..41455+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_421:2897..41455+ >TCONS_00064691 ID=TCONS_00064691|Name=TCONS_00064691|organism=Clytia hemisphaerica|type=CDS|length=26061bp|location=Sequence derived from alignment at scaffold_421:2897..41455+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00064691 vs. Swiss-Prot (Human)
Match: SIN1 (Target of rapamycin complex 2 subunit MAPKAP1 OS=Homo sapiens GN=MAPKAP1 PE=1 SV=2) HSP 1 Score: 249.595 bits (636), Expect = 5.316e-73 Identity = 178/509 (34.97%), Postives = 286/509 (56.19%), Query Frame = 2
Query: 71 MTFWDNPQMIINHIRHSCVTSDDTGMCEMVIVQDEPEIFQFKQRKRIGGMYTLDEGGDFPD----YPSSFDIAVSP--GVMGRTPKTHKNDRFRKKPEHH--CKTIHWNDQLEDITDGVLKEDMFEEVVLPVEPVKGGRXXXXXXXXEETLYQPSNPYLEFAKFDGEGLDETCSTKTIHFFLPFLLPSADDERGVIITICVIETATVKDVKGLVLCKACLKGKESSIHTDINKYGVWIAEDDGTVDSEFPMLDEKEAISKYGFQFLAVDEKDKDKQNKPSQKNVPVKIFLENNGYSLVKVERMDVKMRIILNKILKKRSLLKKTS--MYQLRRESDDHDQFVDLDSTLESTGTMTFHLVKNAQVRTMTKTDERDQYNQYKKAINDEILSTQYKSYNVLLVRGLFASSTEVSLGIHGQKIEIDPVAQIKSH--IFSKIKPVSLDVSNIAECEITDDNKTGGRALFRIYFKKSEDFKHYEFEASRHVANEIVSKIYNILKSRSQLVRAEFL 1561
M F DNP +I+ HIR S VTSDDTGMCEMV++ + ++ + G + +G + Y S DI S G+ R+ + +R RK+ ++ CK I W ++ + LK +FE+ L +P G+ S+LS LE+ Q +NP+ E++KFDG+G T +TK I +LP L S+ D R + +T+ + +A V+D+ GL+ + +G+E ++ +++ Y + IAEDDG VD++FP LD E I K+GF LA+ EK S++++ V+I +G+SL++V+ V M+ IL K +K+R +K S Y+L ++S+ + VDLDSTLES F LV+ R +E Q + + D + S YKS+ V ++ L +T+V LGI G K+EIDPV K+ + K KP+S+D + C++ ++ K+ A+F++ + + D+KH FE+ NEIV K+ IL+SR+ RA++
Sbjct: 1 MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKIHPPSMPGDSGSEIQGSNGETQGYVYAQSVDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQELKS-LFEKKSLKEKPPISGKQSILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTATKKIDVYLP--LHSSQD-RLLPMTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHKFGFSTLALVEK-YSSPGLTSKESLFVRINAA-HGFSLIQVDNTKVTMKEILLKAVKRRKGSQKVSGPQYRLEKQSEP-NVAVDLDSTLESQSAWEFCLVRENSSRADGVFEEDSQID--IATVQDMLSSHHYKSFKVSMIHRL-RFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDSDLLCACDLAEE-KSPSHAIFKLTYLSNHDYKHLYFESDAATVNEIVLKVNYILESRASTARADYF 498 The following BLAST results are available for this feature:
BLAST of TCONS_00064691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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