TCONS_00064684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064684
Unique NameTCONS_00064684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064684 ID=TCONS_00064684|Name=TCONS_00064684|organism=Clytia hemisphaerica|type=transcript|length=341bp
TGGATCGACAATGCTCGTTGGAATGATTACACTTCCTGTGTTTTCTATTT
CTTCTCCAGTTATGGAATTCAACGTTGTGTCGGTAACGTGTGTTAGAAAT
GGTGCTATTTCTGCAGCGTCCCAGATATCTTTGTTTAGTAGTGAGTGTGC
TGAACCAGTGTTGATAAGTGCCATGTATGGTTTTGTTTTACCTTCTATTG
ACAGGTAAACTCTGGTTGTGATTCCatgtttcttttcttcatcTCTTTTA
TATTGACTTGATACCGCAAGTACATGTCCTCGTCTTGCTCTGTTTTTATG
GGAGTGTCCACGTTTCTTGTTATGATGCACGTACGTGAATA
Run BLAST on NCBI

protein sequence of TCONS_00064684-protein

>TCONS_00064684-protein ID=TCONS_00064684-protein|Name=TCONS_00064684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
FTYVHHNKKRGHSHKNRARRGHVLAVSSQYKRDEEKKHGITTRVYLSIEG
KTKPYMALINTGSAHSLLNKDIWDAAEIAPFLTHVTDTTLNSITGEEIEN
TGSVIIPTSIVDP
Run BLAST on NCBI

transcript from alignment at scaffold_420:201523..201863

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064684 ID=TCONS_00064684|Name=TCONS_00064684|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at scaffold_420:201523..201863 (Clytia hemisphaerica)
TATTCACGTACGTGCATCATAACAAGAAACGTGGACACTCCCATAAAAAC
AGAGCAAGACGAGGACATGTACTTGCGGTATCAAGTCAATATAAAAGAga
tgaagaaaagaaacatGGAATCACAACCAGAGTTTACCTGTCAATAGAAG
GTAAAACAAAACCATACATGGCACTTATCAACACTGGTTCAGCACACTCA
CTACTAAACAAAGATATCTGGGACGCTGCAGAAATAGCACCATTTCTAAC
ACACGTTACCGACACAACGTTGAATTCCATAACTGGAGAAGAAATAGAAA
ACACAGGAAGTGTAATCATTCCAACGAGCATTGTCGATCCA

Coding sequence (CDS) from alignment at scaffold_420:201523..201863

>TCONS_00064684 ID=TCONS_00064684|Name=TCONS_00064684|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_420:201523..201863 (Clytia hemisphaerica)
TTCACGTACGTGCATCATAACAAGAAACGTGGACACTCCCATAAAAACAG
AGCAAGACGAGGACATGTACTTGCGGTATCAAGTCAATATAAAAGAgatg
aagaaaagaaacatGGAATCACAACCAGAGTTTACCTGTCAATAGAAGGT
AAAACAAAACCATACATGGCACTTATCAACACTGGTTCAGCACACTCACT
ACTAAACAAAGATATCTGGGACGCTGCAGAAATAGCACCATTTCTAACAC
ACGTTACCGACACAACGTTGAATTCCATAACTGGAGAAGAAATAGAAAAC
ACAGGAAGTGTAATCATTCCAACGAGCATTGTCGATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040572XLOC_040572Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064684-exon-scaffold_420-1491911889:201523..201863TCONS_00064684-exon-scaffold_420-1491911889:201523..201863Clytia hemisphaericaexon
TCONS_00064684-exon-scaffold_420-1510915933:201523..201863TCONS_00064684-exon-scaffold_420-1510915933:201523..201863Clytia hemisphaericaexon
TCONS_00064684-exon-scaffold_420-1575043694:201523..201863TCONS_00064684-exon-scaffold_420-1575043694:201523..201863Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064684-proteinTCONS_00064684-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_420supercontigscaffold_420:201523..201863 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.268769	0	1.6872	0	0	0	1.03664	5.49942	1.35892	0.817394	1.0892	1.0209	10.3726	11.7218	8.99491	12.7023	2.53076	3.89213	8.27336	12.6982	6.61183	2.26052	0.897884	3.16212	17.5085	18.6614	2.75753	0.917419	0.298313	0.607867
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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