|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064671 ID=TCONS_00064671|Name=TCONS_00064671|organism=Clytia hemisphaerica|type=transcript|length=2823bpRun BLAST on NCBI protein sequence of TCONS_00064671-protein >TCONS_00064671-protein ID=TCONS_00064671-protein|Name=TCONS_00064671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=806bp ENSFKMWLKVSTLITFVCVETILAGEQSTFHHKTCERDYTKVGCFKKQAFRun BLAST on NCBI transcript from alignment at scaffold_420:262585..272432- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064671 ID=TCONS_00064671|Name=TCONS_00064671|organism=Clytia hemisphaerica|type=transcript|length=9848bp|location=Sequence derived from alignment at scaffold_420:262585..272432- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_420:262585..272432- >TCONS_00064671 ID=TCONS_00064671|Name=TCONS_00064671|organism=Clytia hemisphaerica|type=CDS|length=31473bp|location=Sequence derived from alignment at scaffold_420:262585..272432- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00064671 vs. Swiss-Prot (Human)
Match: MRC1 (Macrophage mannose receptor 1 OS=Homo sapiens GN=MRC1 PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.855e-33 Identity = 152/651 (23.35%), Postives = 234/651 (35.94%), Query Frame = 3
Query: 702 SSAKKTFAEAEDYCQSIGGHLASIHSKEENDFV--LKEAQNRGLVHPYIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWK-SNTGWNDIFCGNKYNFVCKMSQ------------------------FHGKVYYV-STVKKNHDQAESHCKTMGGNLVTIHSQAENDYVHKMAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKG--KENCAVYQHINLAKHG-WNNIYCSGVKQYICKYQPDILVYTSESLCPKERGFCVRSDGADQNSGVIKVNALDGNTDQHQKDCLKKCHAHKGATGCEVIWNQHNRGCYIHTQSIARGNNVDRHYCWVFSKCAQGDKFVPHGEASYYFSDNKVNYNDADAACHHIGGFLASVHSAAENKFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEM---YGTGHWNDHYCDRKKAFVCK----------------------------------ILYFKGNRYFISSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPF--AGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNLRN-EDCMHVKWKST-KWNDIKCMNKYQFVCKF*ILMTP 2438
S + T+ +A CQ L SI E ++ L + GL +IG W+W+D + Y WLP P+ + GK C+ L N W ++ C K ++CK + G Y + KK A + C+ GG+L +IH+ E D++ +++IGL D+ F W DG+ V FT W GEP+ + +E+C V + K G W + C YICK + RS G + +++V GC W +H+ CY+ +++ F++ Q C++ +L ++ E F++ R W G +D +G++ W + +W + P G+ C M G W+ CD K FVCK LY KG KK W+++ FC G L SI++KEE I+ + H GL + WSDGS V Y W++ EPNN +N E C +K T WNDI C + ++C+ TP
Sbjct: 234 SKSALTWHQARKSCQQQNAELLSITEIHEQTYLTGLTSSLTSGL---WIGLNSLSFNSGWQWSDRSPFRYLNWLPGSPSAEPGKS-CVSLNPGKNAKWENLECVQKLGYICKKGNTTLNSFVIPSESDVPTHCPSQWWPYAGHCYKIHRDEKKIQRDALTTCRKEGGDLTSIHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDCVVMK----GKDGYWADRGCEWPLGYICKMKS-------------------RSQGPE----IVEVEK-----------------------GCRKGWKKHHFYCYMIGHTLS-----------TFAEANQ--------------------------TCNNENAYLTTIEDRYEQAFLTSFVGLRPEKYFWTGLSDIQTKGTFQWTIEEEVRFTHWNSDMP---GRKPGCVAMRTGIAGGLWDVLKCDEKAKFVCKHWAEGVTHPPKPTTTPEPKCPEDWGASSRTSLCFKLYAKGKH-----EKKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQIQKGQTP 785 HSP 2 Score: 120.553 bits (301), Expect = 1.796e-27 Identity = 79/257 (30.74%), Postives = 129/257 (50.19%), Query Frame = 3
Query: 711 KKTFAEAEDYCQSIGGHLASIHSKEENDFVLKEAQNRGLVHP--YIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWKSNT-GWNDIFCGNKYNFVCKMSQ-------------------------FHGKVYYVSTVKKNHDQAESHCKTMGGNLVTIHSQAENDYVHK-MAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKGKENCAVYQHINLAKHGWNNIYCSGVKQYICK 1394
KKT+ E+ D+C+++GG LASI++KEE + + G H ++G T + W+DG+ ++Y+ W EPNN E+C L T WNDI C + N++C++ + + YY S K+ D A + CK G+LV+I S++E ++ K + ++ FIGL ++ + +F+W+DGSKV + W GEPNF ++ V + N WN+I C +IC+
Sbjct: 670 KKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQIQKGQTPKPEPTPAPQDNPPVTEDGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLL-ISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSN--SGFWNDINCGYPNAFICQ 923 HSP 3 Score: 104.375 bits (259), Expect = 1.540e-22 Identity = 80/303 (26.40%), Postives = 120/303 (39.60%), Query Frame = 3
Query: 621 EPSEVRQCQLAVCKPALVKRGELIYHFSSAKKTFAEAEDYCQSIGGHLASIHSKEENDFVLKEAQNRGLVHPYIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWKSNTGWNDIFCGNKYNFVCKMSQFHGKVYYVSTV--------------------------------KKNHDQAESHCKTMGGNLVTIHSQAENDYVHKMAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKGKENCAVYQHINLA---------KHGWNNIYCSGVKQYICKYQPD 1406
EP+ Q V + V + Y+FS K+T A +C+ G L SI S+ E F+ K Y G + K+ W DG+ + Y W EPN N E+C+ ++ ++ WNDI CG F+C Q H +TV +KN +A C GGNLV+I ++ E ++ K + + GL DVN F W DG V +T+W G P G+ + Y+ + W + C + YIC+ + D
Sbjct: 788 EPTPAPQDNPPVTEDGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLLISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSNSGFWNDINCGYPNAFIC---QRHNSSINATTVMPTMPSVPSGCKEGWNFYSNKCFKIFGFMEEERKNWQEARKACIGFGGNLVSIQNEKEQAFLTYHMKDSTF-SAWTGLNDVNSEHTFLWTDGRGVHYTNWGKGYPG--GRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQTRSD 1084 HSP 4 Score: 100.138 bits (248), Expect = 2.960e-21 Identity = 78/280 (27.86%), Postives = 121/280 (43.21%), Query Frame = 3
Query: 1698 DKFVPHGEASYYFSDNKVNYNDADAACHHIGGFLASVHSAAENKFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEMYG-TGHWNDHYCDRKKAFVCKI------------------------LYFKGNRYF-----ISSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPFAGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNLR------NEDCMHVKWKST----KWNDIKCMNKYQFVCK 2417
D +V + + YYFS K ++A A C G L S+ S +E KF+ R + + G S + + W D + Y +WA EPN A + E+C MY +G WND C AF+C+ F N+ F + +KNW +A K C F G+L SI +++E ++ + K + GLND E ++W+DG V Y W P R + DC+ + ++ KW D C +K ++C+
Sbjct: 802 DGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLLISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSNSGFWNDINCGYPNAFICQRHNSSINATTVMPTMPSVPSGCKEGWNFYSNKCFKIFGFMEEERKNWQEARKACIGFGGNLVSIQNEKEQAFLTYHM-KDSTFSAWTGLNDVNSEHTFLWTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQ 1080 HSP 5 Score: 99.7525 bits (247), Expect = 4.689e-21 Identity = 74/247 (29.96%), Postives = 115/247 (46.56%), Query Frame = 3
Query: 1776 CHHIGGFLASVHSAAEN----KFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEMYG--TGHWNDHYCDRKKAFVCKI-------------------------LYFKGNRYFISSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHP-FAGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNL-RNEDCMHVKWKSTKWNDIKCMNKYQFVCK 2417
C +GG LAS+++ E + I+ KL W+G S + W+D +P SY+NWA EPNN E C E+ G T WND C+ ++C+I + +K +Y+ S K+ +A FC G L SI S+ E +++ + + + F GL + K+ W DGS+VDY++W+ EPN +E+C+ + S WNDI C F+C+
Sbjct: 680 CRALGGDLASINNKEEQQTIWRLITASGSYHKL--FWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQIQKGQTPKPEPTPAPQDNPPVTEDGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLL-ISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSNSGFWNDINCGYPNAFICQ 923 HSP 6 Score: 98.2117 bits (243), Expect = 1.248e-20 Identity = 84/302 (27.81%), Postives = 132/302 (43.71%), Query Frame = 3
Query: 588 SRGGKDCSVLGEPSEVRQCQLAVCKPALVKRGELIYHFSSAKKTFAEAEDYCQSIGGHLASIHSKEENDFVLKEAQNRGLVHPYIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWKSNTGWNDIFCGNKYNFVCKMSQ------------------------FHGKVYYV-STVKKNHDQAESHCKTMGGNLVTIHSQAENDYV-HKMAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKGKENCAVYQHINLAKHG-WNNIYCSGVKQYICKYQPDIL 1412
S+ G C +PS + + VK G+ Y K + EAE YC+ +ASI N F + + +I ++ ++ W D + Y W +EP K+ C++L + W C + F+CK S FHG YY+ S+ +N QA C MG +LV+I S AE+ ++ +++ + + +IGL N G + W++ S V F +W G+P+ G+ N V H A G W+NI+CS K YICK +P I+
Sbjct: 1073 SKRGYICQTRSDPS-LTNPPATIQTDGFVKYGKSSYSLMRQKFQWHEAETYCKLHNSLIASILDPYSNAFAWLQMETSN-ERVWIALNSNLTDNQYTWTDKWRVRYTNWAADEPKLKSA---CVYL-DLDGYWKTAHCNESFYFLCKRSDEIPATEPPQLPGRCPESDHTAWIPFHGHCYYIESSYTRNWGQASLECLRMGSSLVSIESAAESSFLSYRVEPLKSKTNFWIGLFR-NVEGTWLWINNSPVSFVNWNTGDPS--GERNDCVALH---ASSGFWSNIHCSSYKGYICK-RPKII 1361 HSP 7 Score: 89.7373 bits (221), Expect = 4.579e-18 Identity = 70/269 (26.02%), Postives = 113/269 (42.01%), Query Frame = 3
Query: 1692 QGDKFVPHGEASYYFSDNKVNYNDADAACHHIGGFLASVHSAAENKF--ISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEMYGTGHWNDHYCDRKKAFVCK------------------------ILYFKGNRYFI-SSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPFAGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNLRNEDCMHVKWKSTKWNDIKCMNKYQFVCK 2417
Q D FV +G++SY K +++A+ C +AS+ N F + E + VWI N + + W D Y NWA +EP C + G+W +C+ F+CK + F G+ Y+I SS +NW A C L SI S E+ ++ ++ K K F + EG W+W + S V ++ W+ +P+ RN DC+ + S W++I C + ++CK
Sbjct: 1095 QTDGFVKYGKSSYSLMRQKFQWHEAETYCKLHNSLIASILDPYSNAFAWLQMETSNER---VWIALNSNLTDNQYTWTDKWRVRYTNWAADEPKLKSA---CVYLDLDGYWKTAHCNESFYFLCKRSDEIPATEPPQLPGRCPESDHTAWIPFHGHCYYIESSYTRNWGQASLECLRMGSSLVSIESAAESSFLSYRVEPLKSKTNFWIGLFRNVEGTWLWINNSPVSFVNWNTGDPSGERN-DCVALHASSGFWSNIHCSSYKGYICK 1356 The following BLAST results are available for this feature:
BLAST of TCONS_00064671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.