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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064669 ID=TCONS_00064669|Name=TCONS_00064669|organism=Clytia hemisphaerica|type=transcript|length=2553bpRun BLAST on NCBI transcript from alignment at scaffold_420:262585..272432- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064669 ID=TCONS_00064669|Name=TCONS_00064669|organism=Clytia hemisphaerica|type=transcript|length=9848bp|location=Sequence derived from alignment at scaffold_420:262585..272432- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064669 vs. Swiss-Prot (Human)
Match: MRC1 (Macrophage mannose receptor 1 OS=Homo sapiens GN=MRC1 PE=1 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 5.885e-47 Identity = 139/552 (25.18%), Postives = 240/552 (43.48%), Query Frame = 3
Query: 711 KKTFAEAEDYCQSIGGHLASIHSKEENDFVLKEAQNRGLVHP--YIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWKSNT-GWNDIFCGNKYNFVCKMSQ-------------------------FHGKVYYVSTVKKNHDQAESHCKTMGGNLVTIHSQAENDYVHK-MAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKGKENCAVYQHINLAKHGWNNIYCSGVKQYICKYQPDILVYTSGDKFVPHGEASY----------------YFSDNKVNYNDADAACHHIGGFLASVHSAAENKFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNN-----AGKGEDCPEMYG-----TGHWNDHYCDRKKAFVCK------------------ILYFKGNRYFISSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPFAGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNLRNEDCMHVKWKSTKWNDIKCMNKYQFVCK 2147
KKT+ E+ D+C+++GG LASI++KEE + + G H ++G T + W+DG+ ++Y+ W EPNN E+C L T WNDI C + N++C++ + + YY S K+ D A + CK G+LV+I S++E ++ K + ++ FIGL ++ + +F+W+DGSKV + W GEPNF ++ V + N WN+I C +IC+ + T+ +P + + + + N+ +A AC GG L S+ + E F++ K + W G ND + E +++W D Y NW K P + + DC + G G W D CD K+ ++C+ + + + Y + K W++AE +C + + + SI N + + Q+ + + + LN + ++ W+D V Y W+ EP C+++ W C + F+CK
Sbjct: 670 KKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQIQKGQTPKPEPTPAPQDNPPVTEDGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLL-ISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSN--SGFWNDINCGYPNAFICQRHNSSINATTVMPTMPSVPSGCKEGWNFYSNKCFKIFGFMEEERKNWQEARKACIGFGGNLVSIQNEKEQAFLTYHMKDSTF-SAWTGLNDVNSEHTFLWTDGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQTRSDPSLTNPPATIQTDGFVKYGKSSYSLMRQKFQWHEAETYCKLHNSLIASILDPYSNAFAWLQM-ETSNERVWIALNSNLTDNQYTWTDKWRVRYTNWAADEPK--LKSACVYLDLDGY-WKTAHCNESFYFLCK 1213 HSP 2 Score: 180.259 bits (456), Expect = 2.279e-46 Identity = 149/582 (25.60%), Postives = 233/582 (40.03%), Query Frame = 3
Query: 621 EPSEVRQCQLAVCKPALVKRGELIYHFSSAKKTFAEAEDYCQSIGGHLASIHSKEENDFVLKEAQNRGLVHPYIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWKSNTGWNDIFCGNKYNFVCKMSQFHGKVYYVSTV--------------------------------KKNHDQAESHCKTMGGNLVTIHSQAENDYVHKMAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKGKENCAVYQHINLA---------KHGWNNIYCSGVKQYICKYQPDILVY-----TSGDKFVPHGEASYYFSDNKVNYNDADAACHHIGGFLASVHSAAENKF--ISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEMYGTGHWNDHYCDRKKAFVCKI------------------------LYFKGNRYFI-SSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPFAGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNLRNEDCMHVKWKSTKWNDIKCMNKYQFVCK 2147
EP+ Q V + V + Y+FS K+T A +C+ G L SI S+ E F+ K Y G + K+ W DG+ + Y W EPN N E+C+ ++ ++ WNDI CG F+C Q H +TV +KN +A C GGNLV+I ++ E ++ K + + GL DVN F W DG V +T+W G P G+ + Y+ + W + C + YIC+ + D + D FV +G++SY K +++A+ C +AS+ N F + E + VWI N + + W D Y NWA +EP C + G+W +C+ F+CK + F G+ Y+I SS +NW A C L SI S E+ ++ ++ K K F + EG W+W + S V ++ W+ +P+ RN DC+ + S W++I C + ++CK
Sbjct: 788 EPTPAPQDNPPVTEDGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLLISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSNSGFWNDINCGYPNAFIC---QRHNSSINATTVMPTMPSVPSGCKEGWNFYSNKCFKIFGFMEEERKNWQEARKACIGFGGNLVSIQNEKEQAFLTYHMKDSTF-SAWTGLNDVNSEHTFLWTDGRGVHYTNWGKGYPG--GRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQTRSDPSLTNPPATIQTDGFVKYGKSSYSLMRQKFQWHEAETYCKLHNSLIASILDPYSNAFAWLQMETSNER---VWIALNSNLTDNQYTWTDKWRVRYTNWAADEPKLKSA---CVYLDLDGYWKTAHCNESFYFLCKRSDEIPATEPPQLPGRCPESDHTAWIPFHGHCYYIESSYTRNWGQASLECLRMGSSLVSIESAAESSFLSYRVEPLKSKTNFWIGLFRNVEGTWLWINNSPVSFVNWNTGDPSGERN-DCVALHASSGFWSNIHCSSYKGYICK 1356 HSP 3 Score: 167.162 bits (422), Expect = 3.702e-42 Identity = 139/549 (25.32%), Postives = 228/549 (41.53%), Query Frame = 3
Query: 711 KKTFAEAEDYCQSIGGHLASIHSKEENDFVLKEAQNRGLVHPYIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGK-EHCMHLWKSNTGWNDIFCGNKYNFVCKM--------------------SQFHGKVYYVSTVKKNHDQAESHCKTMGGNLVTIHSQAENDYVHKMAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKGKENCAVYQHINLAKHGWNNIYCSGVKQYICKYQPDILVYTSG----------DKFVPHGEASYYF------SDNKVNYNDADAACHHIGGFLASVHSAAEN----KFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEMYG--TGHWNDHYCDRKKAFVCKI-------------------------LYFKGNRYFISSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHP-FAGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNL-RNEDCMHVKWKSTKWNDIKCMNKYQFVCK 2147
KK +A C+ GG L SIH+ EE DF++ + +IG D + + W+DGT + + KWL EP+++N + E C+ + + W D C ++CKM + H Y + +A C L TI + E ++ R + GL D+ G F W +V FT W + P G++ V +A W+ + C +++CK+ + + + + + S F K + ++ C +GG LAS+++ E + I+ KL W+G S + W+D +P SY+NWA EPNN E C E+ G T WND C+ ++C+I + +K +Y+ S K+ +A FC G L SI S+ E +++ + + + F GL + K+ W DGS+VDY++W+ EPN +E+C+ + S WNDI C F+C+
Sbjct: 381 KKIQRDALTTCRKEGGDLTSIHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDCVVMKGKDGYWADRGCEWPLGYICKMKSRSQGPEIVEVEKGCRKGWKKHHFYCYMIGHTLSTFAEANQTCNNENAYLTTIEDRYEQAFLTSFVGLRPEKYFWTGLSDIQTKGTFQWTIEEEVRFTHWNSDMP---GRKPGCVAMRTGIAGGLWDVLKCDEKAKFVCKHWAEGVTHPPKPTTTPEPKCPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKL--FWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQIQKGQTPKPEPTPAPQDNPPVTEDGWVIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLL-ISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSNSGFWNDINCGYPNAFICQ 923 HSP 4 Score: 161.384 bits (407), Expect = 2.419e-40 Identity = 146/568 (25.70%), Postives = 223/568 (39.26%), Query Frame = 3
Query: 702 SSAKKTFAEAEDYCQSIGGHLASIHSKEENDFV--LKEAQNRGLVHPYIGGTDAGSEGKWRWNDGTAMAYKKWLPNEPNNKNGKEHCMHLWKS-NTGWNDIFCGNKYNFVCKMSQ------------------------FHGKVYYV-STVKKNHDQAESHCKTMGGNLVTIHSQAENDYVHKMAKSRGYLDVFIGLRDVNKNGQFSWVDGSKVVFTDWQNGEPNFKG--KENCAVYQHINLAKHG-WNNIYCSGVKQYICKYQ-----PDILVYTSGDK--FVPHGEASYYFSDNKVNYNDADAACHHIGGFLASVHSAAENKFISDEAKRRKLGNVWIGGNDKSREGSWVWNDLTPFSYKNWAKNEPNNAGKGEDCPEM---YGTGHWNDHYCDRKKAFVCK----------------------------------ILYFKGNRYFISSAKKNWYDAEKFCAIFDGHLTSIHSKEENDYIYNQLVKRKIKHPF--AGLNDQKQEGKWVWSDGSEVDYLAWSHREPNNLRN-EDCMHVKWKST-KWNDIKCMNKYQFVCKF*ILMTP 2168
S + T+ +A CQ L SI E ++ L + GL +IG W+W+D + Y WLP P+ + GK C+ L N W ++ C K ++CK + G Y + KK A + C+ GG+L +IH+ E D++ +++IGL D+ F W DG+ V FT W GEP+ + +E+C V + K G W + C YICK + P+I+ G + + H Y + +A+ C++ +L ++ E F++ R W G +D +G++ W + +W + P G+ C M G W+ CD K FVCK LY KG KK W+++ FC G L SI++KEE I+ + H GL + WSDGS V Y W++ EPNN +N E C +K T WNDI C + ++C+ TP
Sbjct: 234 SKSALTWHQARKSCQQQNAELLSITEIHEQTYLTGLTSSLTSGL---WIGLNSLSFNSGWQWSDRSPFRYLNWLPGSPSAEPGKS-CVSLNPGKNAKWENLECVQKLGYICKKGNTTLNSFVIPSESDVPTHCPSQWWPYAGHCYKIHRDEKKIQRDALTTCRKEGGDLTSIHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDCVVMK----GKDGYWADRGCEWPLGYICKMKSRSQGPEIVEVEKGCRKGWKKHHFYCYMIGHTLSTFAEANQTCNNENAYLTTIEDRYEQAFLTSFVGLRPEKYFWTGLSDIQTKGTFQWTIEEEVRFTHWNSDMP---GRKPGCVAMRTGIAGGLWDVLKCDEKAKFVCKHWAEGVTHPPKPTTTPEPKCPEDWGASSRTSLCFKLYAKGKH-----EKKTWFESRDFCRALGGDLASINNKEEQQTIWRLITASGSYHKLFWLGLTYGSPSEGFTWSDGSPVSYENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQIQKGQTP 785 The following BLAST results are available for this feature:
BLAST of TCONS_00064669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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