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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064667 ID=TCONS_00064667|Name=TCONS_00064667|organism=Clytia hemisphaerica|type=transcript|length=640bp
AGAAGGCAGAGTGTAGAgaaatgttgttgttgttttgatgtAATAAAGGT
TTTTTACGATTCGATAAATCTCTGGATGAATATGGGATTATCCAATGCTT
CCTCGATATACCTCGAAAGTTCATCAAGTCTCTTTTGCAATACGTGCAGT
GAAAAATCATCACATATTTCACATGAAACATTGAGTGAGAGCTTTActat
tgaaacatttttgatgTCGAGCAGCAGCTTGGACAAGTGGCTTCATTCTT
TTACGTTCGTAACAGATGGTATATCTTATCATTCATATGTAAACGTTTCA
GAGATTTTACCAAGTGACAGTTATAACGTTTCAAGTACCATTATAGTTCC
ATTGGATGGAGGTATCGATGAAGCTTTATCGATAGAAATGTGGATATTGA
TCATTTTTTTAAGTGGCTCCTTCATTTGCTTTGCTTTACTTTTGATGGTT
CTATgcttcaaaagaaaaaacagACGTCGAATGAAAGCGAAAAGGATTGA
TGATGAAGAGGCATATCAAATGGAAGTCATCAACACTCTCAATAATAAAC
AACATTTCTTTTACCCACACCATCACAATGATTTGACTTTCGATAACCCA
ACATTCGCCAGCATTAGGTGACAAACCAATAATCCTTCAA Run BLAST on NCBI protein sequence of TCONS_00064667-protein >TCONS_00064667-protein ID=TCONS_00064667-protein|Name=TCONS_00064667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
RRQSVEKCCCCFDVIKVFYDSINLWMNMGLSNASSIYLESSSSLFCNTCS
EKSSHISHETLSESFTIETFLMSSSSLDKWLHSFTFVTDGISYHSYVNVS
EILPSDSYNVSSTIIVPLDGGIDEALSIEMWILIIFLSGSFICFALLLMV
LCFKRKNRRRMKAKRIDDEEAYQMEVINTLNNKQHFFYPHHHNDLTFDNP
TFASIR Run BLAST on NCBI transcript from alignment at scaffold_420:231677..232862- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064667 ID=TCONS_00064667|Name=TCONS_00064667|organism=Clytia hemisphaerica|type=transcript|length=1186bp|location=Sequence derived from alignment at scaffold_420:231677..232862- (Clytia hemisphaerica)
AGAAGGCAGAGTGTAGAGAAATGTTGTTGTTGTTTTGATGTAATAAAGGT
TTTTTACGATTCGATAAATCTCTGGATGAATATGGGATTATCCAATGCTT
CCTCGATATACCTCGAAAGTTCATCAAGTCTCTTTTGCAATACGTGCAGT
GAAAAATCATCACATATTTCACATGAAACATTGAGTGAGAGCTTTACTAT
TGAAACATTTTTGATGTCGAGCAGCAGCTTGGACAAGTGGCTTCATTCTT
TTACGTTCGTAACAGATGGTATATCTTATCATTCATATGTAAACGTTTCA
GAGATTTTACCAAGTGACAGTTATAACGTTTCAAGTACCATTATAGTTCC
ATTGGATGGAGGTATCGATGAAGCTTTATCGATAGAAATGTGGATATTGA
TCATTTTTTTAAGTGGCTCCTTCATTTGCTTTGCTTTACTTTTGATGGTT
CTATGCTTCAAAAGAAAAAACAGGTACACTTATTTCCAGATAAATCAATC
TTCTGTTCAATTTACCGTTTTAACCTGCTAACACCTTAACACAACCCTGC
CCCACTGGAAATCTTAAGCCCCACTTGAACTCCTTCGAAGTTCAATGTAA
AAATTAGCACTAAAATTCGGTGTTGTGAGACAAGGGAATGTTAACTGCCA
ATCCAAAAAGCAAACTTCAAGATGCGCGCAAGATGTTTACCCAACTTCCT
TATGCGTGAAGCTATAAATGCCATCCTCGGAAGCTTTAGGCTTCCTGCGG
TGGCAATTATAATGAAAATCCCTTTTAAATTCCTTTGTATAAATCTCAAA
ATCTGTTTGGATTCAAATTTCAAAGGGATATTCTCTAATATTTTGGGTGA
TTTTTCCATGAGTAGGAAATTGTAACTAACATTAACCATGGGACTTACTC
GTTGTTAGTTTATGGTCCTCTTCATCGAATATCCCCTCTTCTTTAGCTGT
CTACTCGAAGTTAGGAGAGAGGACCACTCCTTTCCCATGTAATGAGAACC
CCGATTCTTCTTCTTTTAGACGTCGAATGAAAGCGAAAAGGATTGATGAT
GAAGAGGCATATCAAATGGAAGTCATCAACACTCTCAATAATAAACAACA
TTTCTTTTACCCACACCATCACAATGATTTGACTTTCGATAACCCAACAT
TCGCCAGCATTAGGTGACAAACCAATAATCCTTCAA Coding sequence (CDS) from alignment at scaffold_420:231677..232862- >TCONS_00064667 ID=TCONS_00064667|Name=TCONS_00064667|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_420:231677..232862- (Clytia hemisphaerica)
ACGTCGAATGAAAGCGAAAAGGATTGATGATGAAGAGGCATATCAAATGG
AAGTCATCAACACTCTCAATAATAAACAACATTTCTTTTACCCACACCAT
CACAATGATTTGACTTTCGATAACCCAACATTCGCCAGCATTAGGTGAAG
AAGGCAGAGTGTAGAGAAATGTTGTTGTTGTTTTGATGTAATAAAGGTTT
TTTACGATTCGATAAATCTCTGGATGAATATGGGATTATCCAATGCTTCC
TCGATATACCTCGAAAGTTCATCAAGTCTCTTTTGCAATACGTGCAGTGA
AAAATCATCACATATTTCACATGAAACATTGAGTGAGAGCTTTACTATTG
AAACATTTTTGATGTCGAGCAGCAGCTTGGACAAGTGGCTTCATTCTTTT
ACGTTCGTAACAGATGGTATATCTTATCATTCATATGTAAACGTTTCAGA
GATTTTACCAAGTGACAGTTATAACGTTTCAAGTACCATTATAGTTCCAT
TGGATGGAGGTATCGATGAAGCTTTATCGATAGAAATGTGGATATTGATC
ATTTTTTTAAGTGGCTCCTTCATTTGCTTTGCTTTACTTTTGATGGTTCT
ATGCTTCAAAAGAAAAAACAGACGTCGAATGAAAGCGAAAAGGATTGATG
ATGAAGAGGCATATCAAATGGAAGTCATCAACACTCTCAATAATAAACAA
CATTTCTTTTACCCACACCATCACAATGATTTGACTTTCGATAACCCAAC
ATTCGCCAGCATTAGGTGAAGAAGGCAGAGTGTAGAGAAATGTTGTTGTT
GTTTTGATGTAATAAAGGTTTTTTACGATTCGATAAATCTCTGGATGAAT
ATGGGATTATCCAATGCTTCCTCGATATACCTCGAAAGTTCATCAAGTCT
CTTTTGCAATACGTGCAGTGAAAAATCATCACATATTTCACATGAAACAT
TGAGTGAGAGCTTTACTATTGAAACATTTTTGATGTCGAGCAGCAGCTTG
GACAAGTGGCTTCATTCTTTTACGTTCGTAACAGATGGTATATCTTATCA
TTCATATGTAAACGTTTCAGAGATTTTACCAAGTGACAGTTATAACGTTT
CAAGTACCATTATAGTTCCATTGGATGGAGGTATCGATGAAGCTTTATCG
ATAGAAATGTGGATATTGATCATTTTTTTAAGTGGCTCCTTCATTTGCTT
TGCTTTACTTTTGATGGTTCTATGCTTCAAAAGAAAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064667-exon-scaffold_420-1575043694:232390..232862 | TCONS_00064667-exon-scaffold_420-1575043694:232390..232862 | Clytia hemisphaerica | exon |
| TCONS_00064667-exon-scaffold_420-1575043694:231677..231843 | TCONS_00064667-exon-scaffold_420-1575043694:231677..231843 | Clytia hemisphaerica | exon |
| TCONS_00064667-exon-scaffold_420-1510915933:232390..232862 | TCONS_00064667-exon-scaffold_420-1510915933:232390..232862 | Clytia hemisphaerica | exon |
| TCONS_00064667-exon-scaffold_420-1510915933:231677..231843 | TCONS_00064667-exon-scaffold_420-1510915933:231677..231843 | Clytia hemisphaerica | exon |
| TCONS_00064667-exon-scaffold_420-1491911889:232390..232862 | TCONS_00064667-exon-scaffold_420-1491911889:232390..232862 | Clytia hemisphaerica | exon |
| TCONS_00064667-exon-scaffold_420-1491911889:231677..231843 | TCONS_00064667-exon-scaffold_420-1491911889:231677..231843 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_420 | supercontig | scaffold_420:231677..232862 - |
Blast
The following BLAST results are available for this feature:
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