Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064649 ID=TCONS_00064649|Name=TCONS_00064649|organism=Clytia hemisphaerica|type=transcript|length=3943bpRun BLAST on NCBI protein sequence of TCONS_00064649-protein >TCONS_00064649-protein ID=TCONS_00064649-protein|Name=TCONS_00064649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=630bp MLFDVKKENTGNKHSISTIFMTFGQFLDHDITDTPSEGCHAQTCDQVASFRun BLAST on NCBI transcript from alignment at scaffold_420:287641..311050+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064649 ID=TCONS_00064649|Name=TCONS_00064649|organism=Clytia hemisphaerica|type=transcript|length=23410bp|location=Sequence derived from alignment at scaffold_420:287641..311050+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_420:287641..311050+ >TCONS_00064649 ID=TCONS_00064649|Name=TCONS_00064649|organism=Clytia hemisphaerica|type=CDS|length=5679bp|location=Sequence derived from alignment at scaffold_420:287641..311050+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064649 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2) HSP 1 Score: 337.421 bits (864), Expect = 1.722e-95 Identity = 217/610 (35.57%), Postives = 309/610 (50.66%), Query Frame = 1 Query: 1648 SYSNCIKPRYCRYCSWYDRFSSYRSIDGTCNNLRYFTWGATDTPLRRACRTRQYSGAEYADKYKYDVPRG------YPGFAPKLPPANHVSEMLFDVKKENTGNKHSISTIFMTFGQFLDHDITDTPSEGCHA-----QTCDQVASFKYPCFSILWDENNY-----SKCTPFGRSRAICRRRKGT--------RQQVNILTSFVDGSQIYGAKKELFHDLRKNDGSGLMKLKDNLMELDPKIKHCHTHGG--------------CSLVGDHRGDENIALHSMHTLWVREHNRIAKELKELNPHWDGERVFQEARKINTAVLQHIVFKEWLPMIVRPF------RYRGYRPRVNPNIINSFATAAFRFGHSLIPNSFELLDKNFDPINKP-ITLQHAFFNR-KPINQYGIEPTMFGLLG--NKSEEVDTDFSFSIARRLFVAPGKEDHVDLMARNIQRGRDHGLPTYGKFRRWCRLRPIRTWDQLKKHMPAKAV-HAFKELYPTPSDIELFPAGMAENHRGRRIVGPTFECIIRRQFNRLQKGDRFYYRARGVFSRAQRTAIYRTRLSTVLCNNLERVVSVQRHAFYVAGSRNKRISCNRIPKLELWAWKE 3330 + S C R CS YR+ DGTCNNL++ WGA+ T R ++ +G ++ PRG Y G A LP VS L + E + + M +GQFLDHD+ T A Q C V S PCFS++ N+ ++C F RS +C + R+Q+N LTS++D S +YG+ + +R + S L+ +++ K G C L GDHR +E + L SMHTLW REHNRIA EL +LNPHWDG+ ++ E RKI A +QHI ++ WLP I+ Y GY P +N I N+FATAAFRFGH+L+ LD+NF PI + + L AFF+ + +N+ GI+P + GL G K + + RLF + +DL A NIQRGRDHG+P Y +R +C L T++ LK + + K LY + +I+LFPA + E+ +GPT C++ QF RL+ GDR +Y GVFS AQ T I +T L+ +LC+N + + VQ F VA + SC+ IP+++L W++ Sbjct: 719 NLSGCTAHRRVNNCSDMCFHQKYRTHDGTCNNLQHPMWGASLTAFERLLKSVYENG--------FNTPRGINPHRLYNGHA--LPMPRLVSTTL--IGTETVTPDEQFTHMLMQWGQFLDHDLDSTVVALSQARFSDGQHCSNVCSNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYPREQINQLTSYIDASNVYGSTEHEARSIR-DLASHRGLLRQGIVQRSGKPLLPFATGPPTECMRDENESPIPCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLF-SMAHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVAEFPHGYGSCDEIPRVDLRVWQD 1314 The following BLAST results are available for this feature:
BLAST of TCONS_00064649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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