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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064646 ID=TCONS_00064646|Name=TCONS_00064646|organism=Clytia hemisphaerica|type=transcript|length=2209bpRun BLAST on NCBI protein sequence of TCONS_00064646-protein >TCONS_00064646-protein ID=TCONS_00064646-protein|Name=TCONS_00064646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=537bp MVKKNGSITLTNEPVDGASGKEMVVGFTNKSYDKQGDGMSPDVSIKGFKKRun BLAST on NCBI transcript from alignment at scaffold_420:243540..252843+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064646 ID=TCONS_00064646|Name=TCONS_00064646|organism=Clytia hemisphaerica|type=transcript|length=9304bp|location=Sequence derived from alignment at scaffold_420:243540..252843+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_420:243540..252843+ >TCONS_00064646 ID=TCONS_00064646|Name=TCONS_00064646|organism=Clytia hemisphaerica|type=CDS|length=17754bp|location=Sequence derived from alignment at scaffold_420:243540..252843+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064646 vs. Swiss-Prot (Human)
Match: BAT1 (b(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1) HSP 1 Score: 384.8 bits (987), Expect = 1.097e-124 Identity = 208/488 (42.62%), Postives = 299/488 (61.27%), Query Frame = 1
Query: 181 KKVVNEKEDLEQATEGITVKRTVGLFGGISLIIGTMIGSGIFASAATVSKFSGSVGMSFVVWAGSGMLAICGGLCYVELGLMLPESGGEYIYIKEALGDMCAFLFVYVSNIVLKPASLSAICVAAGDYIVEPFLVYEHVAENQTLIVKLVAFFFLTVLIIINCSSASLANQVQVVFTICKLAALAMIILTGIVRLGQGYTTNFSEPFKGTSTHISDIGYAFYGGLWAYDGWNNLNYAVEELNNPLRNLPRSIVFGLPLVIGLYMFVIIAYLTVMPFETLANSSAVGVVFGNEVYGVMHWIMPVLVAASSFGAANGCAFTGGRLIFASARNKHMPEILAMLHKERNSPIPALIFSYIIALIMILPESSNFGTLITYFNFVAWVTYGVTFGSLLWLRYKRPDLKRPYKVFIGIPVVMVFCSLYLVIAPFASAPL-ESFFCLLFILSGIPFYFAFVKYQIIPDKWLKKYDQ-LTQKIQKYLNVAMPASAED 1638
K+ +EK Q + ++++ +GL GIS+I+GT+IGSGIF S +V + +VG ++WA G+LA G LC+ ELG M+ +SGGEY Y+ EA G + A+LF + S IV+KP S + IC++ +Y+ PF V + ++VK +A + + +N S L + VQ +FT KL +A+II++G+V L QG T NF F+G + I AFY GLWAYDGWN LNY EEL NP RNLP +I+ G+PLV Y+ + ++Y TVM L S AV V FG+ V WI+P+ VA S+ GAANG FT GRLI+ + R HM ++L+ + R +P PA+IF IIA I I+P N +L+ YF+F AW+ YG+T L+ +R+ R +L+RP KV + IPV+M S++LV+AP S P E +C+LFILSG+ FYF FV Y+ W +K + +T +Q + V P +
Sbjct: 8 KRREDEKSIQSQEPKTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLGALCFAELGTMITKSGGEYPYLMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPFYVG---CKPPQIVVKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQSQAVAVTFGDRVLYPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIPGDIN--SLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIKVPVVIPVLMTLISVFLVLAPIISKPTWEYLYCVLFILSGLLFYFLFVHYKF---GWAQKISKPITMHLQMLMEVVPPEEDPE 487 The following BLAST results are available for this feature:
BLAST of TCONS_00064646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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