TCONS_00064645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064645
Unique NameTCONS_00064645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064645 ID=TCONS_00064645|Name=TCONS_00064645|organism=Clytia hemisphaerica|type=transcript|length=416bp
CTTTTTTACAGCTGGGATTAGATAATTCTTTAATTCAAGCTGGTGTGTAA
ATATGCTTTACTCTTCCTCACCTCAGGTCACAACGTTCGACAATGTGTTG
ATGTGAACGTGGATAAAATCATTGTCATTGTTCTGCAATAAATTTTATAT
TGAGAGATGGTCCAATCAAAGTGTTGTAGGATGCTGTGATTTTCAATATC
GATTAAATCAACTTATGAATTTATCCCAGCCATTATTCAAATGATTGCTG
CATACCAATTTTTATAGCTATATAGTGGAAGCTGACTTTTGAACAAttat
aaaatgaatttgatgtaAACTTACTTACTTGTGTTACGTTGTTTGAGCAT
CCTGCTTCAGGTAAGGTTCTTGGTGAACCACACCTCTGTGTGATCAATCT
GTCGAGAGAAAAAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_420:114946..115730+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064645 ID=TCONS_00064645|Name=TCONS_00064645|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at scaffold_420:114946..115730+ (Clytia hemisphaerica)
CTTTTTTACAGCTGGGATTAGATAATTCTTTAATTCAAGCTGGTGTGTAA
ATATGCTTTACTCTTCCTCACCTCAGGTCACAACGTTCGACAATGTGTTG
ATGTGAACGTGGATAAAATCATTGTCATTGTTCTGCAATAAATTTTATAT
TGTAAGTatgtatttttcttcaaatttcttttgtattcaacACAATTAAA
ATCAGAGAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAATCAGAGAGTATCCTAATTAGTTTAAC
TAATAAGAGCATTACAAACTGAATTCGTACTAGAAACTTTTCTCCTTCAG
GCATCAGGGAGATGCAAGCAACAATTTGACTGCTGGTATCATGTACCAAA
GTTGATAGTTTTTAAGATTTCTGGCAGACTGGATgaattaaatgtttttg
tattttcttattttgttcagGAGAGATGGTCCAATCAAAGTGTTGTAGGA
TGCTGTGATTTTCAATATCGATTAAATCAACTTATGAATTTATCCCAGCC
ATTATTCAAATGATTGCTGCATACCAATTTTTATAGCTATATAGTGGAAG
CTGACTTTTGAACAAttataaaatgaatttgatgtaAACTTACTTACTTG
TGTTACGTTGTTTGAGCATCCTGCTTCAGGTAAGGTTCTTGGTGAACCAC
ACCTCTGTGTGATCAATCTGTCGAGAGAAAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040552XLOC_040552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064645-exon-scaffold_420-1491911889:114946..115096TCONS_00064645-exon-scaffold_420-1491911889:114946..115096Clytia hemisphaericaexon
TCONS_00064645-exon-scaffold_420-1510915933:114946..115096TCONS_00064645-exon-scaffold_420-1510915933:114946..115096Clytia hemisphaericaexon
TCONS_00064645-exon-scaffold_420-1575043694:114946..115096TCONS_00064645-exon-scaffold_420-1575043694:114946..115096Clytia hemisphaericaexon
TCONS_00064645-exon-scaffold_420-1491911889:115466..115730TCONS_00064645-exon-scaffold_420-1491911889:115466..115730Clytia hemisphaericaexon
TCONS_00064645-exon-scaffold_420-1510915933:115466..115730TCONS_00064645-exon-scaffold_420-1510915933:115466..115730Clytia hemisphaericaexon
TCONS_00064645-exon-scaffold_420-1575043694:115466..115730TCONS_00064645-exon-scaffold_420-1575043694:115466..115730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_420supercontigscaffold_420:114946..115730 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.44938	6.34777	3.22123	1.38149	85.6869	55.8289	21.9015	17.5449	7.43929	6.68878	5.9192	4.32617	4.80581	7.94615	5.4349	4.48879	11.5855	10.6169	9.48957	9.15717	12.9822	26.2441	6.60945	12.4312	3.1294	8.07528	14.8365	14.4197	16.1611	10.9574
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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