TCONS_00064644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064644
Unique NameTCONS_00064644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064644 ID=TCONS_00064644|Name=TCONS_00064644|organism=Clytia hemisphaerica|type=transcript|length=354bp
GTCAACATTCTAGcggcagaaattttcatgattaTCATAGTTTTTCAAAA
AGACGAAATTTTCATGATTATGATGATTTTTTGTAAGTGGTTTTGAGCGA
TAGTATATAGATGGGTAAAGATGCTGGAGAAGAAGCGTGATTAGAGCGGG
AAACAGCAAGCAACTCCCAAACAGCAAGCAACAGCCCGACCttgcaaaaa
tcaaaatggaatCATCTAGTAACGTTGAAGCCAACCACTCGAACAATGGA
CTGATGGAACTGATGGAAACTCCATCAGACGATGCCTAAAGTTCCAGTAA
AAGAAattaatcaaactaatcaaacaataatatacaatttttgaagcaat
agcN
Run BLAST on NCBI

transcript from alignment at scaffold_420:73546..74743+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064644 ID=TCONS_00064644|Name=TCONS_00064644|organism=Clytia hemisphaerica|type=transcript|length=1198bp|location=Sequence derived from alignment at scaffold_420:73546..74743+ (Clytia hemisphaerica)
GTCAACATTCTAGcggcagaaattttcatgattaTCATAGTTTTTCAAAA AGACGAAATTTTCATGATTATGATGATTTTTTGTAAGTGGTTTTGAGCGA TAGTATATAGATGGGTAAAGATGCTGGAGAAGAAGCGTGATTAGAGCGGG AAACAGCAAGCAACTCCCAAACAGCAAGCAACAGCCCGACCttgcaaaaa tcaaaatggaatCATCTAGTAACGTTGAAGGTAAGAGACTTTAATTAATG GATGCTGAAATATTTCATCAAATATCTTAACTGCAAGGTCATATAATTAA ACTGACTCATCCTGCCTGCCATAGCAtagggctattccaaaaaaaacagg TATTGACCAACTTTTTCCActataaaattttgattaacaaattatcccct ggaaattagggGGTAGACCCCTCTGGAAAGTGAGggctgttagggttagg gttagggttagggtgaTCGAAGCAATCAGACagtaaatcctgggtaatag tcgattgcgattcgattgcgttcgacaatcgaattgcaattattcgattg cgttcaattgcgttcgattgattcggcgttcgattcgttcgattcgttcg attcgttcgatttacgctaaagtaaaacaattacgcacatgtaaatgggt cattgtttgaggtctgggaaaatttccgggagatagcctaccggcagtgc gcggatctaggtgggttccgcctcccccgtagatctttttcttgggaagt tgatcttcaaattagttttcaaggttggcttggctcaaattttttcatct atggcataaattttaggcaatttctcaaagtttttgaaaatgttgatttc attaaaaagcgccaggttattttttttgcttgagagtcaagtaaacgata tagcgctttcgcagcattaatctttgatacgcattttggcgggacgctag tttGGCTAACTGTCTGGGACCTCCCtgaaaaagttcgtcaatacccctgt atggtttaaaaaatggaatagcccatttagCCTGTTATTGAAAACTGAAA TCCATCATCTATTATCATCATCAGCCAACCACTCGAACAATGGACTGATG GAACTGATGGAAACTCCATCAGACGATGCCTAAAGTTCCAGTAAAAGAAa ttaatcaaactaatcaaacaataatatacaatttttgaagcaatagcN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040551XLOC_040551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064644-exon-scaffold_420-1491911889:73546..73775TCONS_00064644-exon-scaffold_420-1491911889:73546..73775Clytia hemisphaericaexon
TCONS_00064644-exon-scaffold_420-1510915933:73546..73775TCONS_00064644-exon-scaffold_420-1510915933:73546..73775Clytia hemisphaericaexon
TCONS_00064644-exon-scaffold_420-1575043694:73546..73775TCONS_00064644-exon-scaffold_420-1575043694:73546..73775Clytia hemisphaericaexon
TCONS_00064644-exon-scaffold_420-1491911889:74620..74743TCONS_00064644-exon-scaffold_420-1491911889:74620..74743Clytia hemisphaericaexon
TCONS_00064644-exon-scaffold_420-1510915933:74620..74743TCONS_00064644-exon-scaffold_420-1510915933:74620..74743Clytia hemisphaericaexon
TCONS_00064644-exon-scaffold_420-1575043694:74620..74743TCONS_00064644-exon-scaffold_420-1575043694:74620..74743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_420supercontigscaffold_420:73546..74743 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.38283 4.29472 5.54065 4.60756 11.5485 8.08282 11.0098 7.06785 8.0411 24.5174 17.1042 18.9024 19.6897 21.1239 11.8094 22.8119 14.143 12.4253 10.4038 10.0703 8.75289 7.96177 8.69669 2.29545 6.83008 4.22009 23.8203 10.7415 41.2785 44.5464
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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