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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064641 ID=TCONS_00064641|Name=TCONS_00064641|organism=Clytia hemisphaerica|type=transcript|length=3335bp
tcttaaaatgtaaaaatttaatcaattaattaaaatttagaaAGAGTGAT
GTTAATGttatcaaataatttaatcACCAAAAAATTCCGTTACATTGAGC
TCGAATCGTTTCAACTTTTATTCATATAaattttaatagaaaaaaagcAA
GCAATATTTCGCTCTTTTTCAGAtcttttttattgacttctttTCAGACT
AGTTGCAAGTTCTCCTGGTAAATAGACTCAATTAAGTAAATTAAGATTTG
AtatcctttttcaaatttagataaAATAGGATTACCTGGTAGAGATGTAG
ATTAATATGACGCCAATTCACCAGCTCTTCTTGAAGCTTACCTTTTACGT
TGTTGCTGTACAAAAGAATTTTCGATGAAGTTTGCCCCTGCTGCAGCTGC
AGCTGCATGTTCTCCTGGTAAATAGACATAAGTAAAAAGAAGTGATTAGT
GGCGGAGCATTTTCCAACCACAATATTATGCTCATGGTTGACATGTGGTA
TCACGGGAGGTTTCTTGGGAGGCATTGCTAGTCTCTGTTTTCTTTGAGTT
CTTATTGGGACGAGGGCAGGGTTTCTTGCCTGCTGTGGGGGCCGAACCTC
TCGTACTGGCGCTTAGAGTGGTCGTTGAAATGCATGTTGCGGACTTGAAG
AGCGGATCATTGGCACGGCTAAGGTTAATCTTTTTTCTGTATTAAATAAT
TCTCTCATTAATCGTAAGATAAGTAAGCTAAATGAAAAGTGGTGATTTGC
AAAGAAAGGCAAATTTGATATTGTTATCTTACCCTGGTACAAGTAACGAT
GAGGCTGAGCCCCATTCCGACAGGGTACCGACAGACCCTTAAAACCTGTC
TCATGAAATATAAATGCTACGGCCTTAAAATTTTTAGGGTGCGTTCAGAA
AGGGTATAGGGTCATGAAATATGCAAAATCCCGAAATcgataaatttttc
acaaaatctcaaaacttcatgtgactcccactTTAATTCCAACTCGAAAA
TCccttattgaaaatgaaaattcgagctAGAAGCGAGTGGcgtcataatt
tgcacttttattACGTCATAACTTAGTTAACTCGAATATTTCTAACTCTA
AAATTGCTAATTCGAAGATTCTGGGCCTCCATTTAATATTTAATTGCACA
ATGggttttttctcatttgagtGTTTTGCAACTAAAGAGTATACAAAGGA
CGAATTTGAAAAAGGACCAATTCAGACATCCACGTCTTACATGATAAAAA
AGTACTTGTTGAGATTTTACAGAGCAGACAGATTGTAAATTTGACTGAAA
TTGCAAATCGGCCGTTTGAATTGTTCGATTTGGATAACGTTTGTTCATAA
AATCTGATTTATCCAACAAACGAGACTAGTGTTTTCGATTCACCGACCGT
AAGTCTAGATGGAACCTTTCGCAATAACTGaagatttcggattatttttt
caaatttaaataaaattgatgtGGCACTGGTCCTGCCATTGCGCCAGCTC
CTCTTACAGCTACATGATTTCCTGAAGAAGTGGTTAGTGGCGTAGCATTT
TTCAATTGGAATATATAGGTCACGATGAAATCCCACAAGATGCACATGCT
ATGTTTATTTCAACCTTATCAAATGAAAGTAATTCAACATAACTAACGTC
CTTCAACAATCTGATACAAATGATGATTTATGTGGCATTGATCCTGCCAA
TTCTGCAGCTCTTCTTGCAGTTGCAAGTTCTCCTGGTAAATAAACATAAT
TAAGTAAACTGTAAGATTTGggattctttttttcaaatttaaatgaAATG
GGATTTTTACCTGGTATAGGTGAAGGTTAATATGGCACTTATCCTGCCAA
TCCTGTAGCTCCTCTTGCAGTTGCAAGTTCTCCTGGTAAATAAAATGAGA
TTTTTACTACCTCGTACAAATGAAGATTTATATGGCATTGATTAGCCAAT
TCTGCAGCTCTTCTTGCAGCTGCATGCTGTTCTGGCAAACAAACATAATT
AAGCAAAAGGAAGTGGTTAGTCCTGCagcatttttcaatttcaatataTA
GGCTTATATAATTAAGGGGGGCTCCGAGAAAGATGAACTGATTGAGGTTT
TTCTGGATGGCtggacatttttgtgaaaagttaCGTAAGAAACAGTCAAA
AAGGGTCTTAAAGTTATTTTAACGGAAAGTTTTTGTACGCTTATACTGAA
TTTCAGTCACTGCTCTTTGTTTAGGGTGTACAGCTATTTCTACAGGAGAA
GAATAAAACCCTTAATCAGCAAGTGTaatgaaaagagaaaattttgtcTA
ATAGTGCCAGATCTAAATAATTTTAATTTGCTGCCATGTTGTGAACTACT
TTGACGTTTTAGTATGTCACCTTTTGTGTTGTTTCGGTTTCATAACAAta
ccttttttctttcactGGGCTATTAGAATTCTTGAATTTAAAACGGTTAT
TTCTGGAATTATTTTTCCATCAGAAAATCTTTAGTGGAGAGCAAAAATCT
TCTTGCTGGGAAAGAACTCCTTactttttttgaacattttcagcTTAATG
ACGGCGGTATAAAATTGTCTTTGTCCCATTCGCTCAGCAACCTAAGAAAG
TTTCATAAGAAACTAATCATAAAAAcgtaacaaaataaaagaatttgttt
TAAGTTTATGCAATAATTATTTTAATGATCGAACTCACATCCCGATCGGC
GGTTAATTGTTGGATTTGGGTTTGAGCCTGCATAAGTTGACCTCGGAGTT
GATTGATCAACAACTGAAACAATACAAGATAAAGGCAAAAGTGAAATGAA
TACGAACTTAATTGATGTATAACTAGCAAGAACAAAACAGTATAGATGCC
TTGCAGGAACAAATAGAgctataaaagaaatcaaaaatcaaaaagaaatc
aaaaagaaatcagaaataaaaaagaaataaaaaagaaataaaaaataata
aaaaaatctaaaaaaaaacaaaaaaaaaatcaaaaaaaaaatcaaaaatc
aaaaagaaatcaaaaatcaaaaagaaatcaaaaagaaatcaaaaagaaat
cagaaatcagaaatcaaaaagaaatcagaaatcaaaaagaaatcagaaat
caaaagaaaatcaaaaagaaatcaaaaagaaatcaaaaatcaaaaagaaa
tcaaaatgaaatcagaaatcaaaaagaaatctaaaagaaatcaaaatgaa
aatcaaaaaaaaatcaaaaatcaaaatcaaaaatcaaaaacaaaatcaaa
aatcaaaaagaaatcaaaaataaatcagaaatcaaaaataaatcagaaat
caaaaaaaaaatagaaaatcaaaaagaaatcaaac Run BLAST on NCBI transcript from alignment at scaffold_420:48275..52429+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064641 ID=TCONS_00064641|Name=TCONS_00064641|organism=Clytia hemisphaerica|type=transcript|length=4155bp|location=Sequence derived from alignment at scaffold_420:48275..52429+ (Clytia hemisphaerica)
tcttaaaatgtaaaaatttaatcaattaattaaaatttagaaAGAGTGAT
GTTAATGttatcaaataatttaatcACCAAAAAATTCCGTTACATTGAGC
TCGAATCGTTTCAACTTTTATTCATATAaattttaatagaaaaaaagcAA
GCAATATTTCGCTCTTTTTCAGAtcttttttattgacttctttTCAGACT
AGTTGCAAGTTCTCCTGGTAAATAGACTCAATTAAGTAAATTAAGATTTG
AtatcctttttcaaatttagataaAATAGGATTACCTGGTAGAGATGTAG
ATTAATATGACGCCAATTCACCAGCTCTTCTTGAAGCTTACCTTTTACGT
TGTTGCTGTACAAAAGAATTTTCGATGAAGTTTGCCCCTGCTGCAGCTGC
AGCTGCATGTTCTCCTGGTAAATAGACATAAGTAAAAAGAAGTGATTAGT
GGCGGAGCATTTTCCAACCACAATATTATGCTCATGGTTGACATGTGGTA
TCACGGGAGGTTTCTTGGGAGGCATTGCTAGTCTCTGTTTTCTTTGAGTT
CTTATTGGGACGAGGGCAGGGTTTCTTGCCTGCTGTGGGGGCCGAACCTC
TCGTACTGGCGCTTAGAGTGGTCGTTGAAATGCATGTTGCGGACTTGAAG
AGCGGATCATTGGCACGGCTAAGGTTAATCTTTTTTCTGTATTAAATAAT
TCTCTCATTAATCGTAAGATAAGTAAGCTAAATGAAAAGTGGTGATTTGC
AAAGAAAGGCAAATTTGATATTGTTATCTTACCCTGGTACAAGTAACGAT
GAGGCTGAGCCCCATTCCGACAGGGTACCGACAGACCCTTAAAACCTGTC
TCATGAAATATAAATGCTACGGCCTTAAAATTTTTAGGGTGCGTTCAGAA
AGGGTATAGGGTCATGAAATATGCAAAATCCCGAAATcgataaatttttc
acaaaatctcaaaacttcatgtgactcccactTTAATTCCAACTCGAAAA
TCccttattgaaaatgaaaattcgagctAGAAGCGAGTGGcgtcataatt
tgcacttttattACGTCATAACTTAGTTAACTCGAATATTTCTAACTCTA
AAATTGCTAATTCGAAGATTCTGGGCCTCCATTTAATATTTAATTGCACA
ATGggttttttctcatttgagtGTTTTGCAACTAAAGAGTATACAAAGGA
CGAATTTGAAAAAGGACCAATTCAGACATCCACGTCTTACATGATAAAAA
AGTACTTGTTGAGATTTTACAGAGCAGACAGATTGTAAATTTGACTGAAA
TTGCAAATCGGCCGTTTGAATTGTTCGATTTGGATAACGTTTGTTCATAA
AATCTGATTTATCCAACAAACGAGACTAGTGTTTTCGATTCACCGACCGT
AAGTCTAGATGGAACCTTTCGCAATAACTGaagatttcggattatttttt
caaatttaaataaaattgatgtGGCACTGGTCCTGCCATTGCGCCAGCTC
CTCTTACAGCTACATGATTTCCTGAAGAAGTGGTTAGTGGCGTAGCATTT
TTCAATTGGAATATATAGGTCACGATGAAATCCCACAAGATGCACATGCT
ATGTTTATTTCAACCTTATCAAATGAAAGTAATTCAACATAACTAACGTC
CTTCAACAATCTGATACAAATGATGATTTATGTGGCATTGATCCTGCCAA
TTCTGCAGCTCTTCTTGCAGTTGCAAGTTCTCCTGGTAAATAAACATAAT
TAAGTAAACTGTAACTGTACTCTTGTTTCTCGctgccatttttatttttc
aaactacAGATTTTCAGCGGGAAGTTTTGAACCAATTTTatcatgataaa
caaatttatttttaatcttttttatctTGGAGATATAAAAGAATAAatca
atttatttcaaattcacAAACAGTGATAAATGTAAGATAAAGATGCAATA
TAAATTCTTTGCAGGCCCAATCAAATGAGCTAACTCAAGGTTGTTTCGGT
GGTCTGCCATTATTATTTGTCTTGTTTCTGTCAACAAATCGAAAAAGGAC
CAATTCAAAACACCCACTTCTCACATAATAAAAAAGTACCTGTTGGGATT
TTACAGAGCAGAGTGTAAATTCGACTACATAGTTACGAATCGGACGCTTG
AATTGTTTGATTTGGATAaagtttgttcaaaaaatctgaTTTATCAACGG
GCTGGTGGTTGTCTCATTACTGGGAAACGGGAAGGTGGCTGTTCAACTGT
GAAAAAAGTCATCGAAAGTGTTTCTTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNcaacttatcaagttttaattgctagcaaactcgta
aaaaagtttgataacctaacgaggagtgttttctatgagttcttaatcca
cctattctaatccgttgcttCAACAATCTGATACAAATGATGATTTATGT
GGCATTGATCCTGCCAATTCTGCAGCTCTTCTTGCAGTTGCAAGTTCTCC
TGGTAAATATTAAACATAATTAAGTAAACTGTAAGATTTGggattctttt
tttcaaatttaaatgaAATGGGATTTTTACCTGGTATAGGTGAAGGTTAA
TATGGCACTTATCCTGCCAATCCTGTAGCTCCTCTTGCAGTTGCAAGTTC
TCCTGGTAAATAAAATGAGATTTTTACTACCTCGTACAAATGAAGATTTA
TATGGCATTGATTAGCCAATTCTGCAGCTCTTCTTGCAGCTGCATGCTGT
TCTGGCAAACAAACATAATTAAGCAAAAGGAAGTGGTTAGTCCTGCagca
tttttcaatttcaatataTAGGCTTATATAATTAAGGGGGGCTCCGAGAA
AGATGAACTGATTGAGGTTTTTCTGGATGGCtggacatttttgtgaaaag
ttaCGTAAGAAACAGTCAAAAAGGGTCTTAAAGTTATTTTAACGGAAAGT
TTTTGTACGCTTATACTGAATTTCAGTCACTGCTCTTTGTTTAGGGTGTA
CAGCTATTTCTACAGGAGAAGAATAAAACCCTTAATCAGCAAGTGTaatg
aaaagagaaaattttgtcTAATAGTGCCAGATCTAAATAATTTTAATTTG
CTGCCATGTTGTGAACTACTTTGACGTTTTAGTATGTCACCTTTTGTGTT
GTTTCGGTTTCATAACAAtaccttttttctttcactGGGCTATTAGAATT
CTTGAATTTAAAACGGTTATTTCTGGAATTATTTTTCCATCAGAAAATCT
TTAGTGGAGAGCAAAAATCTTCTTGCTGGGAAAGAACTCCTTactttttt
tgaacattttcagcTTAATGACGGCGGTATAAAATTGTCTTTGTCCCATT
CGCTCAGCAACCTAAGAAAGTTTCATAAGAAACTAATCATAAAAAcgtaa
caaaataaaagaatttgtttTAAGTTTATGCAATAATTATTTTAATGATC
GAACTCACATCCCGATCGGCGGTTAATTGTTGGATTTGGGTTTGAGCCTG
CATAAGTTGACCTCGGAGTTGATTGATCAACAACTGAAACAATACAAGAT
AAAGGCAAAAGTGAAATGAATACGAACTTAATTGATGTATAACTAGCAAG
AACAAAACAGTATAGATGCCTTGCAGGAACAAATAGAgctataaaagaaa
tcaaaaatcaaaaagaaatcaaaaagaaatcagaaataaaaaagaaataa
aaaagaaataaaaaataataaaaaaatctaaaaaaaaacaaaaaaaaaat
caaaaaaaaaatcaaaaatcaaaaagaaatcaaaaatcaaaaagaaatca
aaaagaaatcaaaaagaaatcagaaatcagaaatcaaaaagaaatcagaa
atcaaaaagaaatcagaaatcaaaagaaaatcaaaaagaaatcaaaaaga
aatcaaaaatcaaaaagaaatcaaaatgaaatcagaaatcaaaaagaaat
ctaaaagaaatcaaaatgaaaatcaaaaaaaaatcaaaaatcaaaatcaa
aaatcaaaaacaaaatcaaaaatcaaaaagaaatcaaaaataaatcagaa
atcaaaaataaatcagaaatcaaaaaaaaaatagaaaatcaaaaagaaat
caaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064641-exon-scaffold_420-1491911889:48275..50019 | TCONS_00064641-exon-scaffold_420-1491911889:48275..50019 | Clytia hemisphaerica | exon |
| TCONS_00064641-exon-scaffold_420-1510915933:48275..50019 | TCONS_00064641-exon-scaffold_420-1510915933:48275..50019 | Clytia hemisphaerica | exon |
| TCONS_00064641-exon-scaffold_420-1575043694:48275..50019 | TCONS_00064641-exon-scaffold_420-1575043694:48275..50019 | Clytia hemisphaerica | exon |
| TCONS_00064641-exon-scaffold_420-1491911889:50840..52429 | TCONS_00064641-exon-scaffold_420-1491911889:50840..52429 | Clytia hemisphaerica | exon |
| TCONS_00064641-exon-scaffold_420-1510915933:50840..52429 | TCONS_00064641-exon-scaffold_420-1510915933:50840..52429 | Clytia hemisphaerica | exon |
| TCONS_00064641-exon-scaffold_420-1575043694:50840..52429 | TCONS_00064641-exon-scaffold_420-1575043694:50840..52429 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_420 | supercontig | scaffold_420:48275..52429 + |
Blast
The following BLAST results are available for this feature:
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