TCONS_00064637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064637
Unique NameTCONS_00064637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064637 ID=TCONS_00064637|Name=TCONS_00064637|organism=Clytia hemisphaerica|type=transcript|length=309bp
CAATGGCTGGCAATGGGGAACATATTGGAAACGTAATCGGTGAGCTACGA
TTGATCAATGACATGAGGGGAGAGATTGTCAGATTGACAAGAGAAAGAGA
TGACGAGCGTGCACAGAGGATGGCGGCGGAACAAGCAGCCGATAATTTTC
ACCACGCAAATTTGGTGTACCCGTACACCAAATTTAATTTGCCATGTGCT
GCGAGAGGGCCAGACAATCCTCACAGGTTGATATTTAGAGGCTTTGTCGA
TGAAAGGACAATTATTGACGCGGAGCATATTCTCCAAGCAGAAACAGTAA
ACGTTCCAG
Run BLAST on NCBI

protein sequence of TCONS_00064637-protein

>TCONS_00064637-protein ID=TCONS_00064637-protein|Name=TCONS_00064637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MAGNGEHIGNVIGELRLINDMRGEIVRLTRERDDERAQRMAAEQAADNFH
HANLVYPYTKFNLPCAARGPDNPHRLIFRGFVDERTIIDAEHILQAETVN
VP
Run BLAST on NCBI

transcript from alignment at scaffold_420:1245..3789+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064637 ID=TCONS_00064637|Name=TCONS_00064637|organism=Clytia hemisphaerica|type=transcript|length=2545bp|location=Sequence derived from alignment at scaffold_420:1245..3789+ (Clytia hemisphaerica)
CAATGGCTGGCAATGGGGAACATATTGGAGtaaatatttttagaatttta
tttttacaacttgTCTGAAAAAACCTTTGCCTAAAGGGTACATTAACTTC
TTTTATAACCAATCCGAGCAATTTTCAATAGATTTTGcttttgaaaagat
ttgaaaGCCGAATTTGATTTTACAGCTTTAAAACCAAGGAGTATCGATAA
TTTNGTTTGAAAGCcgaatttgattttaaaaccAAGGAGTATCGATAATT
TTCTGTGTATTCTTTTAGCTTTATTAACGAAGCAAAAAAGCTTTGTTTGC
TATATGTATTCGGTATGTAATAtagcggttagtgtaaaacacaggtcaca
ggtcacaggtcagtgttgacaggtcagcttcaattactgtaaaacacaaa
taaaatgtttgaaaaacagttgttaatgtcaaaaatataattccaaaggt
attttatcgatctaaaactattttaaagcttaaaatctacccacgtgctt
accacgtgatttcgcgttttatgccgtgtataacacagaccttttcaatg
ttatatgcatgttacgtatgttatatacaaagaatacgTATTAAAGAAAT
ATTGATATCGCCTTttgtgtcatttgttgtcaatatttggggttgatgat
ttgtcatttaagtcttctaaataacatattttgatattacatttccatta
catataatattttcaggaacttatgttatgagttgtatgttatgagttgt
atgttacgagtgcgttacagttttccggtctgtcATTTGTATGACCtatg
tgacccgtgacctgtgacctgtgttttacactaaccggtaATATATAGCT
GTTTTCcattttattcttttgtttgatttatTATAGAACGTAATCGGTGA
GCTACGATTGATCAATGACATGAGGGGAGAGATTGTCAGATTGACAAGAG
AAAGAGATGTgagataatttttttccattaacCCCGTTACTAAAGTACAT
GGTCAAAAATTCTATTATATGGAAAATCCGTTCACTTTTGGTGcttgcaa
atttttattttgcttaCCACTTGCATcacttactttttattttttactga
tGAACTTGAACGCTATCAGATTCGTAAAAAAGCGAACTAAGGGactattt
catttttctcttcCTGTAGGACGAGCGTGCACAGAGGATGGCGGCGGAAC
AAGCAGCCGATAATTTTCACCACGCAAATTTGGTAAGAGCATAGTCCGTA
TAAGAAACAAGACCCTTCCAGacccttttgtttctttctattgttgcgAA
CTTGGACTTGTGTTGAGGAGTATTTGATAACGTTTTTATACGAAGTATGG
TAAGAATAAGTATTTGTTTTCATGACACGGGCAAGACACGCTACAAAAGC
ACAATGAACTTTATACAGTTTTTGTTTTATACCTAGAACCTATTAATATA
CTCTTTtggtgcttaattgtaggggggtcatttcgcaatttttggagaaa
aaagtTATCGCCATATCACNACTtagcaaattgatttttatattattatt
aacaaaggaaaaagtaaacaaaaagtGTTACAACAcaaggcttccagacc
agggttttttatacgaaGTATGGTAAGAAAAAGTATTAGTTCTCAAGATA
CGGGCAAGACACGCTACAAAAGCACAAAGAACTTTAATGCagtttttgtt
ttgtattttttgagacCACCTACCTTGTTAAGACCAGTGTTGTTATAAGG
GTTCCGTGACGTCACAGTGTTTGATACAGCTCGGCTCAGGCCAGTATAAC
CTGAAACGAGAGGTTTGTCAGGGACAGTACGCATGAATCTATCAAGTTGA
CAAACGAAGACATCCTTATTGCAATAAGGATACACACAAAAGAAccccag
cgtggtagattctaccacGGCCCTAAGGCTAATAGGGTGAAGCATAAATG
AGCctgttttctaaaaaaatatgctcataaaaaacatgtaatcaaAGTTC
TCAATGATTTTCTTTCAGGTGTACCCGTACACCAAATTTAATTTGCCATG
TGCTGCGAGAGGGCCAGACAATCCTCACAGGTTGATATTTAGAGGTAAGT
gcaattattttttatctaacCCTTTAACAACCAGGTTAACAGGCTTCTTT
TACCTCCAGCCCCGCCCTAATTAAGAGATGTGGAGCATGTAGGTAAGATG
AACATTATCTATGATCTATCAAATTTTCTGCCCTTTTTCACTTTGGGCTT
CGACAACGAAAGGAGACTTTTATCTATTTaaccaaaaacaaaatacaatt
cCGGGACAATTTCTTTCAGGCGGATTAAAATGTGGCTATTTCATACAGAG
TGGTGACTTTTCCTTCCTATGAGCGTTTCACACATACTAGGTTTAATTCA
ACTTATCTGGAAATatactttctttttaaatattttacagtAAATCAGTA
CACAAGTTTATGTTTTCCGTTTTTAGGCTTTGTCGATGAAAGGACAATTA
TTGACGCGGAGCATATTCTCCAAGCAGAAACAGTAAACGTTCCAG

Coding sequence (CDS) from alignment at scaffold_420:1245..3789+

>TCONS_00064637 ID=TCONS_00064637|Name=TCONS_00064637|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_420:1245..3789+ (Clytia hemisphaerica)
ATGGCTGGCAATGGGGAACATATTGGAAACGTAATCGGTGAGCTACGATT
GATCAATGACATGAGGGGAGAGATTGTCAGATTGACAAGAGAAAGAGATG
ACGAGCGTGCACAGAGGATGGCGGCGGAACAAGCAGCCGATAATTTTCAC
CACGCAAATTTGGTGTACCCGTACACCAAATTTAATTTGCCATGTGCTGC
GAGAGGGCCAGACAATCCTCACAGGTTGATATTTAGAGGCTTTGTCGATG
AAAGGACAATTATTGACGCGGAGCATATTCTCCAAGCAGAAACAGTAAAC
GTTCCAATGGCTGGCAATGGGGAACATATTGGAAACGTAATCGGTGAGCT
ACGATTGATCAATGACATGAGGGGAGAGATTGTCAGATTGACAAGAGAAA
GAGATGACGAGCGTGCACAGAGGATGGCGGCGGAACAAGCAGCCGATAAT
TTTCACCACGCAAATTTGGTGTACCCGTACACCAAATTTAATTTGCCATG
TGCTGCGAGAGGGCCAGACAATCCTCACAGGTTGATATTTAGAGGCTTTG
TCGATGAAAGGACAATTATTGACGCGGAGCATATTCTCCAAGCAGAAACA
GTAAACGTTCCAATGGCTGGCAATGGGGAACATATTGGAAACGTAATCGG
TGAGCTACGATTGATCAATGACATGAGGGGAGAGATTGTCAGATTGACAA
GAGAAAGAGATGACGAGCGTGCACAGAGGATGGCGGCGGAACAAGCAGCC
GATAATTTTCACCACGCAAATTTGGTGTACCCGTACACCAAATTTAATTT
GCCATGTGCTGCGAGAGGGCCAGACAATCCTCACAGGTTGATATTTAGAG
GCTTTGTCGATGAAAGGACAATTATTGACGCGGAGCATATTCTCCAAGCA
GAAACAGTAAACGTTCCAATGGCTGGCAATGGGGAACATATTGGAAACGT
AATCGGTGAGCTACGATTGATCAATGACATGAGGGGAGAGATTGTCAGAT
TGACAAGAGAAAGAGATGACGAGCGTGCACAGAGGATGGCGGCGGAACAA
GCAGCCGATAATTTTCACCACGCAAATTTGGTGTACCCGTACACCAAATT
TAATTTGCCATGTGCTGCGAGAGGGCCAGACAATCCTCACAGGTTGATAT
TTAGAGGCTTTGTCGATGAAAGGACAATTATTGACGCGGAGCATATTCTC
CAAGCAGAAACAGTAAACGTTCCAATGGCTGGCAATGGGGAACATATTGG
AAACGTAATCGGTGAGCTACGATTGATCAATGACATGAGGGGAGAGATTG
TCAGATTGACAAGAGAAAGAGATGACGAGCGTGCACAGAGGATGGCGGCG
GAACAAGCAGCCGATAATTTTCACCACGCAAATTTGGTGTACCCGTACAC
CAAATTTAATTTGCCATGTGCTGCGAGAGGGCCAGACAATCCTCACAGGT
TGATATTTAGAGGCTTTGTCGATGAAAGGACAATTATTGACGCGGAGCAT
ATTCTCCAAGCAGAAACAGTAAACGTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040545XLOC_040545Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064637-exon-scaffold_420-1491911889:1245..1273TCONS_00064637-exon-scaffold_420-1491911889:1245..1273Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1510915933:1245..1273TCONS_00064637-exon-scaffold_420-1510915933:1245..1273Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1575043694:1245..1273TCONS_00064637-exon-scaffold_420-1575043694:1245..1273Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1491911889:2131..2202TCONS_00064637-exon-scaffold_420-1491911889:2131..2202Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1510915933:2131..2202TCONS_00064637-exon-scaffold_420-1510915933:2131..2202Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1575043694:2131..2202TCONS_00064637-exon-scaffold_420-1575043694:2131..2202Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1491911889:2414..2476TCONS_00064637-exon-scaffold_420-1491911889:2414..2476Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1510915933:2414..2476TCONS_00064637-exon-scaffold_420-1510915933:2414..2476Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1575043694:2414..2476TCONS_00064637-exon-scaffold_420-1575043694:2414..2476Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1491911889:3263..3338TCONS_00064637-exon-scaffold_420-1491911889:3263..3338Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1510915933:3263..3338TCONS_00064637-exon-scaffold_420-1510915933:3263..3338Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1575043694:3263..3338TCONS_00064637-exon-scaffold_420-1575043694:3263..3338Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1491911889:3721..3789TCONS_00064637-exon-scaffold_420-1491911889:3721..3789Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1510915933:3721..3789TCONS_00064637-exon-scaffold_420-1510915933:3721..3789Clytia hemisphaericaexon
TCONS_00064637-exon-scaffold_420-1575043694:3721..3789TCONS_00064637-exon-scaffold_420-1575043694:3721..3789Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064637-proteinTCONS_00064637-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_420supercontigscaffold_420:1245..3789 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.354604	2.07477	0	0	1.91281	1.51153	1.3677	2.98765	1.49409	2.96107	2.51483	2.59781	0.235836	0.734754	1.00678	1.29651	1.0648	1.63708	1.13086	0.394453	1.02855	0.501693	0.813164	2.21785	1.52289	1.69893	0.486232	0.51892	0.393583	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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