TCONS_00064632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064632
Unique NameTCONS_00064632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064632 ID=TCONS_00064632|Name=TCONS_00064632|organism=Clytia hemisphaerica|type=transcript|length=313bp
TGATAACAATAAATTGTCTATAAACAATGTCAACAAAAAGAACTGCAGCA
ATTAAAGAGGCTGGAAATGGGATTAAAGCTAACACTTATTGTGGCTCTGG
AATAGACCAACCTGGCTTTGaattgttgaaaatttcaaatcaaatagGTT
ATGGTGTAGTGACAAAAATAATGTTCAAAGCTGGAGACTTTCTTCTAGAA
TACGCAGGTATAGTTTATTTTTCGTTGAATAAGAGCCAACTTGTTGAACC
GGTTCATTTTGTTCTGTACgagttttcttgtttttctgcAATGCTATTGA
TTCTTTTTACATG
Run BLAST on NCBI

transcript from alignment at scaffold_42:48175..48817-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064632 ID=TCONS_00064632|Name=TCONS_00064632|organism=Clytia hemisphaerica|type=transcript|length=643bp|location=Sequence derived from alignment at scaffold_42:48175..48817- (Clytia hemisphaerica)
TGATAACAATAAATTGTCTATAAACAATGTCAACAAAAAGAACTGCAGCA
ATTAAAGAGGCTGGAAATGGGATTAAAGCTAACACTTATTGTGGCTCTGG
AATAGACCAACCTGGCTTTGAATTGTTGAAAATTTCAAATCAAATAGGTA
TAAATTTTTCTGAATGATATTTTCATCCCTTATGTGGCCTAGGTTCTGAC
TCTGACAGCGTCAGCAATTTGCCTAAAATACCGACACTTTTCATATTGCT
TGGAAAATCAACTTAAGTATTCGCTGCAAAATTCACAAAAATCTAATTTT
GTCCGCAATTCTACGATATGACTCCATCAGCGTTTGTAAAGTATCGAGAA
AACTTGTTAATCGTAAGTTTAAAGCATCTTTTTCTCATTAGGCGATCCCT
TTCTCAATACAACGGTACTATTGCTGATATTGCTCGATAGCTCTATACAT
ATAAATCCTCTATTGCTCTATTTTCAGGTTATGGTGTAGTGACAAAAATA
ATGTTCAAAGCTGGAGACTTTCTTCTAGAATACGCAGGTATAGTTTATTT
TTCGTTGAATAAGAGCCAACTTGTTGAACCGGTTCATTTTGTTCTGTACG
AGTTTTCTTGTTTTTCTGCAATGCTATTGATTCTTTTTACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040540XLOC_040540Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064632-exon-scaffold_42-1575043694:48671..48817TCONS_00064632-exon-scaffold_42-1575043694:48671..48817Clytia hemisphaericaexon
TCONS_00064632-exon-scaffold_42-1575043694:48175..48340TCONS_00064632-exon-scaffold_42-1575043694:48175..48340Clytia hemisphaericaexon
TCONS_00064632-exon-scaffold_42-1510915933:48671..48817TCONS_00064632-exon-scaffold_42-1510915933:48671..48817Clytia hemisphaericaexon
TCONS_00064632-exon-scaffold_42-1510915933:48175..48340TCONS_00064632-exon-scaffold_42-1510915933:48175..48340Clytia hemisphaericaexon
TCONS_00064632-exon-scaffold_42-1491911889:48671..48817TCONS_00064632-exon-scaffold_42-1491911889:48671..48817Clytia hemisphaericaexon
TCONS_00064632-exon-scaffold_42-1491911889:48175..48340TCONS_00064632-exon-scaffold_42-1491911889:48175..48340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:48175..48817 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.68206	0.997674	0	0.37777	2.29949	2.18051	1.31534	0.41047	1.72428	2.84773	0	0.227124	1.13404	1.88434	0.193648	1.03907	0	0.262402	1.08757	0	0.989182	0.482488	0	0	0.732298	0.980337	0	0	0	0.385649
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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